| Source ID |
Type |
Tax ID |
Position |
| DCAF12L2 |
UCNEbase |
9606 |
X:124769217-124823325  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007NK_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000009694' => 'teneurin transmembrane protein 1',
'ENSG00000213489' => null,
'ENSG00000232599' => null,
'ENSG00000263886' => null,
'ENSG00000278804' => null,
'ENSMUSG00000016150' => 'teneurin transmembrane protein 1',
'ENSMUSG00000065622' => 'predicted gene, 24763',
'ENSMUSG00000078320' => 'predicted gene 362',
'ENSMUSG00000081036' => 'predicted gene 14628',
'ENSMUSG00000081300' => 'predicted gene 14587',
'ENSMUSG00000081856' => 'predicted gene 14580',
'ENSMUSG00000082839' => 'predicted gene 14588',
'ENSMUSG00000083598' => 'predicted gene 14579'
),
'gene_name_arr' => array(
'ENSG00000009694' => 'TENM1',
'ENSG00000213489' => 'RP13-147D17.1',
'ENSG00000232599' => 'RP1-161N10.1',
'ENSG00000263886' => 'AL953885.1',
'ENSG00000278804' => 'RP13-147D17.2',
'ENSMUSG00000016150' => 'Tenm1',
'ENSMUSG00000065622' => 'Gm24763',
'ENSMUSG00000078320' => 'Gm362',
'ENSMUSG00000081036' => 'Gm14628',
'ENSMUSG00000081300' => 'Gm14587',
'ENSMUSG00000081856' => 'Gm14580',
'ENSMUSG00000082839' => 'Gm14588',
'ENSMUSG00000083598' => 'Gm14579'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 22 => 'Kidney',
(int) 26 => 'Liver',
(int) 31 => 'Lung',
(int) 34 => 'Ovary',
(int) 38 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 21,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000371130' => array(
'start' => '124375903',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-001'
),
'ENST00000422452' => array(
'start' => '124375908',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-201'
),
'ENST00000461429' => array(
'start' => '124453459',
'end' => '124497143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TENM1-002'
),
'ENST00000394467' => array(
'start' => '125326897',
'end' => '125328021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-147D17.1-001'
),
'ENST00000422498' => array(
'start' => '125203805',
'end' => '125204338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-161N10.1-001'
),
'ENST00000580355' => array(
'start' => '125287776',
'end' => '125287843',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL953885.1-201'
),
'ENST00000622651' => array(
'start' => '125320114',
'end' => '125323036',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-147D17.2-001'
),
'ENSMUST00000016294' => array(
'start' => '42532391',
'end' => '43274786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-201'
),
'ENSMUST00000115058' => array(
'start' => '42527866',
'end' => '43167817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-005'
),
'ENSMUST00000115059' => array(
'start' => '42527866',
'end' => '43167838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-001'
),
'ENSMUST00000125231' => array(
'start' => '43323955',
'end' => '43429003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tenm1-003'
),
'ENSMUST00000126161' => array(
'start' => '42897135',
'end' => '43429126',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-002'
),
'ENSMUST00000154433' => array(
'start' => '42824358',
'end' => '43429003',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-004'
),
'ENSMUST00000083688' => array(
'start' => '43254046',
'end' => '43254235',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24763-201'
),
'ENSMUST00000105113' => array(
'start' => '43590989',
'end' => '43593530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm362-201'
),
'ENSMUST00000146148' => array(
'start' => '43592968',
'end' => '43593532',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm362-001'
),
'ENSMUST00000117508' => array(
'start' => '43823924',
'end' => '43824558',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14628-001'
),
'ENSMUST00000121714' => array(
'start' => '43412086',
'end' => '43412743',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14587-001'
),
'ENSMUST00000119122' => array(
'start' => '43710391',
'end' => '43711108',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14580-001'
),
'ENSMUST00000119895' => array(
'start' => '43473783',
'end' => '43473954',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14588-001'
),
'ENSMUST00000117068' => array(
'start' => '43589743',
'end' => '43590025',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14579-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
'ENSG00000009694' => array(
[maximum depth reached]
),
'ENSG00000213489' => array(
[maximum depth reached]
),
'ENSG00000232599' => array(
[maximum depth reached]
),
'ENSG00000278804' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Kidney',
(int) 5 => 'Adipose',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Lung',
(int) 10 => 'Testis',
(int) 11 => 'Testis'
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000016150' => array(
[maximum depth reached]
),
'ENSMUSG00000078320' => array(
[maximum depth reached]
),
'ENSMUSG00000081300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Brain',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Testis',
(int) 33 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000009694' => 'teneurin transmembrane protein 1',
'ENSG00000213489' => null,
'ENSG00000232599' => null,
'ENSG00000263886' => null,
'ENSG00000278804' => null,
'ENSMUSG00000016150' => 'teneurin transmembrane protein 1',
'ENSMUSG00000065622' => 'predicted gene, 24763',
'ENSMUSG00000078320' => 'predicted gene 362',
'ENSMUSG00000081036' => 'predicted gene 14628',
'ENSMUSG00000081300' => 'predicted gene 14587',
'ENSMUSG00000081856' => 'predicted gene 14580',
'ENSMUSG00000082839' => 'predicted gene 14588',
'ENSMUSG00000083598' => 'predicted gene 14579'
)
$gene_name_arr = array(
'ENSG00000009694' => 'TENM1',
'ENSG00000213489' => 'RP13-147D17.1',
'ENSG00000232599' => 'RP1-161N10.1',
'ENSG00000263886' => 'AL953885.1',
'ENSG00000278804' => 'RP13-147D17.2',
'ENSMUSG00000016150' => 'Tenm1',
'ENSMUSG00000065622' => 'Gm24763',
'ENSMUSG00000078320' => 'Gm362',
'ENSMUSG00000081036' => 'Gm14628',
'ENSMUSG00000081300' => 'Gm14587',
'ENSMUSG00000081856' => 'Gm14580',
'ENSMUSG00000082839' => 'Gm14588',
'ENSMUSG00000083598' => 'Gm14579'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124769217',
'seq_end' => '124823325',
'region_length' => '54108',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0002',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124823326',
'seq_end' => '125520307',
'region_length' => '696981',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0003',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '42967707',
'seq_end' => '43885255',
'region_length' => '917548',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 22 => 'Kidney',
(int) 26 => 'Liver',
(int) 31 => 'Lung',
(int) 34 => 'Ovary',
(int) 38 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 21
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000371130' => array(
'start' => '124375903',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-001'
),
'ENST00000422452' => array(
'start' => '124375908',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-201'
),
'ENST00000461429' => array(
'start' => '124453459',
'end' => '124497143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TENM1-002'
),
'ENST00000394467' => array(
'start' => '125326897',
'end' => '125328021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-147D17.1-001'
),
'ENST00000422498' => array(
'start' => '125203805',
'end' => '125204338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-161N10.1-001'
),
'ENST00000580355' => array(
'start' => '125287776',
'end' => '125287843',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL953885.1-201'
),
'ENST00000622651' => array(
'start' => '125320114',
'end' => '125323036',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-147D17.2-001'
),
'ENSMUST00000016294' => array(
'start' => '42532391',
'end' => '43274786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-201'
),
'ENSMUST00000115058' => array(
'start' => '42527866',
'end' => '43167817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-005'
),
'ENSMUST00000115059' => array(
'start' => '42527866',
'end' => '43167838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-001'
),
'ENSMUST00000125231' => array(
'start' => '43323955',
'end' => '43429003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tenm1-003'
),
'ENSMUST00000126161' => array(
'start' => '42897135',
'end' => '43429126',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-002'
),
'ENSMUST00000154433' => array(
'start' => '42824358',
'end' => '43429003',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-004'
),
'ENSMUST00000083688' => array(
'start' => '43254046',
'end' => '43254235',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24763-201'
),
'ENSMUST00000105113' => array(
'start' => '43590989',
'end' => '43593530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm362-201'
),
'ENSMUST00000146148' => array(
'start' => '43592968',
'end' => '43593532',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm362-001'
),
'ENSMUST00000117508' => array(
'start' => '43823924',
'end' => '43824558',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14628-001'
),
'ENSMUST00000121714' => array(
'start' => '43412086',
'end' => '43412743',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14587-001'
),
'ENSMUST00000119122' => array(
'start' => '43710391',
'end' => '43711108',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14580-001'
),
'ENSMUST00000119895' => array(
'start' => '43473783',
'end' => '43473954',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14588-001'
),
'ENSMUST00000117068' => array(
'start' => '43589743',
'end' => '43590025',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14579-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
'ENSG00000009694' => array(
[maximum depth reached]
),
'ENSG00000213489' => array(
[maximum depth reached]
),
'ENSG00000232599' => array(
[maximum depth reached]
),
'ENSG00000278804' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Kidney',
(int) 5 => 'Adipose',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Lung',
(int) 10 => 'Testis',
(int) 11 => 'Testis'
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000016150' => array(
[maximum depth reached]
),
'ENSMUSG00000078320' => array(
[maximum depth reached]
),
'ENSMUSG00000081300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Brain',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Testis',
(int) 33 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124769217',
'seq_end' => '124823325',
'region_length' => '54108',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000009694' => 'teneurin transmembrane protein 1',
'ENSG00000213489' => null,
'ENSG00000232599' => null,
'ENSG00000263886' => null,
'ENSG00000278804' => null,
'ENSMUSG00000016150' => 'teneurin transmembrane protein 1',
'ENSMUSG00000065622' => 'predicted gene, 24763',
'ENSMUSG00000078320' => 'predicted gene 362',
'ENSMUSG00000081036' => 'predicted gene 14628',
'ENSMUSG00000081300' => 'predicted gene 14587',
'ENSMUSG00000081856' => 'predicted gene 14580',
'ENSMUSG00000082839' => 'predicted gene 14588',
'ENSMUSG00000083598' => 'predicted gene 14579'
),
'gene_name_arr' => array(
'ENSG00000009694' => 'TENM1',
'ENSG00000213489' => 'RP13-147D17.1',
'ENSG00000232599' => 'RP1-161N10.1',
'ENSG00000263886' => 'AL953885.1',
'ENSG00000278804' => 'RP13-147D17.2',
'ENSMUSG00000016150' => 'Tenm1',
'ENSMUSG00000065622' => 'Gm24763',
'ENSMUSG00000078320' => 'Gm362',
'ENSMUSG00000081036' => 'Gm14628',
'ENSMUSG00000081300' => 'Gm14587',
'ENSMUSG00000081856' => 'Gm14580',
'ENSMUSG00000082839' => 'Gm14588',
'ENSMUSG00000083598' => 'Gm14579'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 22 => 'Kidney',
(int) 26 => 'Liver',
(int) 31 => 'Lung',
(int) 34 => 'Ovary',
(int) 38 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 21,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000371130' => array(
'start' => '124375903',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-001'
),
'ENST00000422452' => array(
'start' => '124375908',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-201'
),
'ENST00000461429' => array(
'start' => '124453459',
'end' => '124497143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TENM1-002'
),
'ENST00000394467' => array(
'start' => '125326897',
'end' => '125328021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-147D17.1-001'
),
'ENST00000422498' => array(
'start' => '125203805',
'end' => '125204338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-161N10.1-001'
),
'ENST00000580355' => array(
'start' => '125287776',
'end' => '125287843',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL953885.1-201'
),
'ENST00000622651' => array(
'start' => '125320114',
'end' => '125323036',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-147D17.2-001'
),
'ENSMUST00000016294' => array(
'start' => '42532391',
'end' => '43274786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-201'
),
'ENSMUST00000115058' => array(
'start' => '42527866',
'end' => '43167817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-005'
),
'ENSMUST00000115059' => array(
'start' => '42527866',
'end' => '43167838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-001'
),
'ENSMUST00000125231' => array(
'start' => '43323955',
'end' => '43429003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tenm1-003'
),
'ENSMUST00000126161' => array(
'start' => '42897135',
'end' => '43429126',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-002'
),
'ENSMUST00000154433' => array(
'start' => '42824358',
'end' => '43429003',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-004'
),
'ENSMUST00000083688' => array(
'start' => '43254046',
'end' => '43254235',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24763-201'
),
'ENSMUST00000105113' => array(
'start' => '43590989',
'end' => '43593530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm362-201'
),
'ENSMUST00000146148' => array(
'start' => '43592968',
'end' => '43593532',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm362-001'
),
'ENSMUST00000117508' => array(
'start' => '43823924',
'end' => '43824558',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14628-001'
),
'ENSMUST00000121714' => array(
'start' => '43412086',
'end' => '43412743',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14587-001'
),
'ENSMUST00000119122' => array(
'start' => '43710391',
'end' => '43711108',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14580-001'
),
'ENSMUST00000119895' => array(
'start' => '43473783',
'end' => '43473954',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14588-001'
),
'ENSMUST00000117068' => array(
'start' => '43589743',
'end' => '43590025',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14579-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
'ENSG00000009694' => array(
[maximum depth reached]
),
'ENSG00000213489' => array(
[maximum depth reached]
),
'ENSG00000232599' => array(
[maximum depth reached]
),
'ENSG00000278804' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Kidney',
(int) 5 => 'Adipose',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Lung',
(int) 10 => 'Testis',
(int) 11 => 'Testis'
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000016150' => array(
[maximum depth reached]
),
'ENSMUSG00000078320' => array(
[maximum depth reached]
),
'ENSMUSG00000081300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Brain',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Testis',
(int) 33 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000009694' => 'teneurin transmembrane protein 1',
'ENSG00000213489' => null,
'ENSG00000232599' => null,
'ENSG00000263886' => null,
'ENSG00000278804' => null,
'ENSMUSG00000016150' => 'teneurin transmembrane protein 1',
'ENSMUSG00000065622' => 'predicted gene, 24763',
'ENSMUSG00000078320' => 'predicted gene 362',
'ENSMUSG00000081036' => 'predicted gene 14628',
'ENSMUSG00000081300' => 'predicted gene 14587',
'ENSMUSG00000081856' => 'predicted gene 14580',
'ENSMUSG00000082839' => 'predicted gene 14588',
'ENSMUSG00000083598' => 'predicted gene 14579'
)
$gene_name_arr = array(
'ENSG00000009694' => 'TENM1',
'ENSG00000213489' => 'RP13-147D17.1',
'ENSG00000232599' => 'RP1-161N10.1',
'ENSG00000263886' => 'AL953885.1',
'ENSG00000278804' => 'RP13-147D17.2',
'ENSMUSG00000016150' => 'Tenm1',
'ENSMUSG00000065622' => 'Gm24763',
'ENSMUSG00000078320' => 'Gm362',
'ENSMUSG00000081036' => 'Gm14628',
'ENSMUSG00000081300' => 'Gm14587',
'ENSMUSG00000081856' => 'Gm14580',
'ENSMUSG00000082839' => 'Gm14588',
'ENSMUSG00000083598' => 'Gm14579'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124769217',
'seq_end' => '124823325',
'region_length' => '54108',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0002',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124823326',
'seq_end' => '125520307',
'region_length' => '696981',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0003',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '42967707',
'seq_end' => '43885255',
'region_length' => '917548',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 22 => 'Kidney',
(int) 26 => 'Liver',
(int) 31 => 'Lung',
(int) 34 => 'Ovary',
(int) 38 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 21
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000371130' => array(
'start' => '124375903',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-001'
),
'ENST00000422452' => array(
'start' => '124375908',
'end' => '124963817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TENM1-201'
),
'ENST00000461429' => array(
'start' => '124453459',
'end' => '124497143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TENM1-002'
),
'ENST00000394467' => array(
'start' => '125326897',
'end' => '125328021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-147D17.1-001'
),
'ENST00000422498' => array(
'start' => '125203805',
'end' => '125204338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-161N10.1-001'
),
'ENST00000580355' => array(
'start' => '125287776',
'end' => '125287843',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL953885.1-201'
),
'ENST00000622651' => array(
'start' => '125320114',
'end' => '125323036',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-147D17.2-001'
),
'ENSMUST00000016294' => array(
'start' => '42532391',
'end' => '43274786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-201'
),
'ENSMUST00000115058' => array(
'start' => '42527866',
'end' => '43167817',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-005'
),
'ENSMUST00000115059' => array(
'start' => '42527866',
'end' => '43167838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tenm1-001'
),
'ENSMUST00000125231' => array(
'start' => '43323955',
'end' => '43429003',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tenm1-003'
),
'ENSMUST00000126161' => array(
'start' => '42897135',
'end' => '43429126',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-002'
),
'ENSMUST00000154433' => array(
'start' => '42824358',
'end' => '43429003',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Tenm1-004'
),
'ENSMUST00000083688' => array(
'start' => '43254046',
'end' => '43254235',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24763-201'
),
'ENSMUST00000105113' => array(
'start' => '43590989',
'end' => '43593530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm362-201'
),
'ENSMUST00000146148' => array(
'start' => '43592968',
'end' => '43593532',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm362-001'
),
'ENSMUST00000117508' => array(
'start' => '43823924',
'end' => '43824558',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14628-001'
),
'ENSMUST00000121714' => array(
'start' => '43412086',
'end' => '43412743',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14587-001'
),
'ENSMUST00000119122' => array(
'start' => '43710391',
'end' => '43711108',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14580-001'
),
'ENSMUST00000119895' => array(
'start' => '43473783',
'end' => '43473954',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14588-001'
),
'ENSMUST00000117068' => array(
'start' => '43589743',
'end' => '43590025',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14579-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NK_0002' => array(
'genes_in_region' => array(
'ENSG00000009694' => array(
[maximum depth reached]
),
'ENSG00000213489' => array(
[maximum depth reached]
),
'ENSG00000232599' => array(
[maximum depth reached]
),
'ENSG00000278804' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Kidney',
(int) 5 => 'Adipose',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Lung',
(int) 10 => 'Testis',
(int) 11 => 'Testis'
)
),
'CIL_0007NK_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000016150' => array(
[maximum depth reached]
),
'ENSMUSG00000078320' => array(
[maximum depth reached]
),
'ENSMUSG00000081300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Brain',
(int) 19 => 'Colon',
(int) 20 => 'Liver',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Testis',
(int) 33 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NK_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '124769217',
'seq_end' => '124823325',
'region_length' => '54108',
'region_type' => 'UCNEbase',
'el_id' => 'DCAF12L2'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(TENM1)