| Source ID |
Type |
Tax ID |
Position |
| BHLHE22 |
UCNEbase |
10090 |
3:16214007-16214366  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007NS_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000185728' => 'YTH domain family, member 3',
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000241964' => 'RNA, 7SL, cytoplasmic 135, pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSG00000261542' => null,
'ENSG00000172817' => 'cytochrome P450, family 7, subfamily B, polypeptide 1',
'ENSG00000180828' => 'basic helix-loop-helix family, member e22',
'ENSG00000207816' => 'microRNA 124-2',
'ENSG00000253231' => 'cytochrome c oxidase subunit VIc pseudogene 8',
'ENSG00000253750' => null,
'ENSG00000253800' => null,
'ENSG00000254006' => null,
'ENSG00000254102' => null,
'ENSG00000254330' => null,
'ENSG00000254377' => 'MIR124-2 host gene (non-protein coding)',
'ENSG00000213873' => null,
'ENSG00000239261' => 'ribosomal protein L31 pseudogene 41',
'ENSG00000253493' => null,
'ENSDARG00000057939' => 'YTH domain family 3',
'ENSDARG00000058039' => 'basic helix-loop-helix family, member e22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'basic helix-loop-helix family, member e22',
'ENSMUSG00000027564' => 'cysteine-rich perinuclear theca 12',
'ENSMUSG00000039519' => 'cytochrome P450, family 7, subfamily b, polypeptide 1',
'ENSMUSG00000040217' => 'predicted gene 6369',
'ENSMUSG00000074674' => null,
'ENSMUSG00000082896' => 'predicted gene 5844',
'ENSMUSG00000087893' => 'predicted gene, 23441',
'ENSMUSG00000088541' => 'predicted gene, 24963',
'ENSMUSG00000088644' => 'predicted gene, 26485',
'ENSMUSG00000093073' => 'microRNA 124a-2',
'ENSMUSG00000094983' => 'predicted gene, 23726',
'ENSMUSG00000095827' => 'predicted gene 5283',
'ENSMUSG00000096391' => 'predicted gene, 23686',
'ENSMUSG00000100252' => 'Mir124-2 host gene (non-protein coding)'
),
'gene_name_arr' => array(
'ENSG00000185728' => 'YTHDF3',
'ENSG00000215096' => 'IFITM8P',
'ENSG00000241964' => 'RN7SL135P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSG00000261542' => 'RP11-16E18.3',
'ENSG00000172817' => 'CYP7B1',
'ENSG00000180828' => 'BHLHE22',
'ENSG00000207816' => 'MIR124-2',
'ENSG00000253231' => 'COX6CP8',
'ENSG00000253750' => 'RP11-21C4.4',
'ENSG00000253800' => 'RP11-21C4.5',
'ENSG00000254006' => 'RP11-1D12.2',
'ENSG00000254102' => 'RP11-21C4.1',
'ENSG00000254330' => 'RP11-1D12.1',
'ENSG00000254377' => 'MIR124-2HG',
'ENSG00000213873' => 'RP11-678D18.1',
'ENSG00000239261' => 'RPL31P41',
'ENSG00000253493' => 'RP11-89A16.1',
'ENSDARG00000057939' => 'ythdf3',
'ENSDARG00000058039' => 'bhlhe22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'Bhlhe22',
'ENSMUSG00000027564' => 'Cypt12',
'ENSMUSG00000039519' => 'Cyp7b1',
'ENSMUSG00000040217' => 'Gm6369',
'ENSMUSG00000074674' => 'Gm10742',
'ENSMUSG00000082896' => 'Gm5844',
'ENSMUSG00000087893' => 'Gm23441',
'ENSMUSG00000088541' => 'Gm24963',
'ENSMUSG00000088644' => 'Gm26485',
'ENSMUSG00000093073' => 'Mir124a-2',
'ENSMUSG00000094983' => 'Gm23726',
'ENSMUSG00000095827' => 'Gm5283',
'ENSMUSG00000096391' => 'Gm23686',
'ENSMUSG00000100252' => 'RP23-137I13.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 33 => 'Brain',
(int) 68 => 'Breast',
(int) 85 => 'Colon',
(int) 102 => 'Heart',
(int) 121 => 'Kidney',
(int) 142 => 'Liver',
(int) 164 => 'Lung',
(int) 181 => 'Muscle',
(int) 191 => 'Ovary',
(int) 212 => 'Placenta',
(int) 226 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 87,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000517371' => array(
'start' => '63168654',
'end' => '63212445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-010'
),
'ENST00000518373' => array(
'start' => '63187530',
'end' => '63189042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'YTHDF3-013'
),
'ENST00000519428' => array(
'start' => '63168621',
'end' => '63175700',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-007'
),
'ENST00000522282' => array(
'start' => '63168562',
'end' => '63169491',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-004'
),
'ENST00000539294' => array(
'start' => '63168553',
'end' => '63212786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-001'
),
'ENST00000612880' => array(
'start' => '63168687',
'end' => '63186499',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-008'
),
'ENST00000613853' => array(
'start' => '63169020',
'end' => '63186360',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-012'
),
'ENST00000615676' => array(
'start' => '63168655',
'end' => '63212786',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'YTHDF3-003'
),
'ENST00000617200' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-201'
),
'ENST00000617952' => array(
'start' => '63168961',
'end' => '63186261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-005'
),
'ENST00000619337' => array(
'start' => '63169003',
'end' => '63186471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-011'
),
'ENST00000621413' => array(
'start' => '63168661',
'end' => '63209955',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-014'
),
'ENST00000621820' => array(
'start' => '63169022',
'end' => '63210105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-002'
),
'ENST00000621890' => array(
'start' => '63169003',
'end' => '63210167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-006'
),
'ENST00000621957' => array(
'start' => '63168652',
'end' => '63210115',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-015'
),
'ENST00000623280' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-202'
),
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000490144' => array(
'start' => '63234634',
'end' => '63234911',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL135P-201'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENST00000569835' => array(
'start' => '63215981',
'end' => '63218034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-16E18.3-001'
),
'ENST00000310193' => array(
'start' => '64596135',
'end' => '64798761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CYP7B1-001'
),
'ENST00000523954' => array(
'start' => '64587763',
'end' => '64615814',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CYP7B1-002'
),
'ENST00000321870' => array(
'start' => '64580367',
'end' => '64583628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BHLHE22-001'
),
'ENST00000385081' => array(
'start' => '64379149',
'end' => '64379257',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR124-2-201'
),
'ENST00000522620' => array(
'start' => '64331927',
'end' => '64332152',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP8-001'
),
'ENST00000520009' => array(
'start' => '64554236',
'end' => '64554475',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.4-001'
),
'ENST00000517809' => array(
'start' => '64570913',
'end' => '64571332',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.5-001'
),
'ENST00000522106' => array(
'start' => '64801236',
'end' => '64817573',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-001'
),
'ENST00000523769' => array(
'start' => '64801358',
'end' => '64805700',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-002'
),
'ENST00000517909' => array(
'start' => '64574311',
'end' => '64581888',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-001'
),
'ENST00000520834' => array(
'start' => '64574306',
'end' => '64577263',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-002'
),
'ENST00000519680' => array(
'start' => '64703774',
'end' => '64734459',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-1D12.1-001'
),
'ENST00000519741' => array(
'start' => '64377960',
'end' => '64383286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-005'
),
'ENST00000520799' => array(
'start' => '64373328',
'end' => '64378834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-001'
),
'ENST00000521441' => array(
'start' => '64373328',
'end' => '64383787',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-004'
),
'ENST00000524060' => array(
'start' => '64377327',
'end' => '64378435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-002'
),
'ENST00000524284' => array(
'start' => '64377333',
'end' => '64378478',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-003'
),
'ENST00000518241' => array(
'start' => '65377592',
'end' => '65378111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-678D18.1-001'
),
'ENST00000477967' => array(
'start' => '65155407',
'end' => '65155778',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL31P41-001'
),
'ENST00000520501' => array(
'start' => '64973488',
'end' => '64973848',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-89A16.1-001'
),
'ENSDART00000122294' => array(
'start' => '24893699',
'end' => '24908298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ythdf3-001'
),
'ENSDART00000080840' => array(
'start' => '25069506',
'end' => '25071293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-201'
),
'ENSDART00000147658' => array(
'start' => '25069289',
'end' => '25071294',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-001'
),
'ENSDART00000116338' => array(
'start' => '25063580',
'end' => '25063696',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-124-3.1-201'
),
'ENSDART00000154149' => array(
'start' => '25024823',
'end' => '25059751',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-002'
),
'ENSDART00000156423' => array(
'start' => '25024823',
'end' => '25110970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-001'
),
'ENSMUST00000026120' => array(
'start' => '18054174',
'end' => '18057517',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Bhlhe22-001'
),
'ENSMUST00000029080' => array(
'start' => '17948444',
'end' => '17948952',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cypt12-201'
),
'ENSMUST00000035625' => array(
'start' => '18071950',
'end' => '18243338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cyp7b1-201'
),
'ENSMUST00000069626' => array(
'start' => '18533861',
'end' => '18534289',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6369-201'
),
'ENSMUST00000099198' => array(
'start' => '17783514',
'end' => '17786898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10742-201'
),
'ENSMUST00000119417' => array(
'start' => '18008806',
'end' => '18010996',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5844-001'
),
'ENSMUST00000157268' => array(
'start' => '17803621',
'end' => '17803747',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23441-201'
),
'ENSMUST00000157916' => array(
'start' => '17251301',
'end' => '17251444',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24963-201'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
),
'ENSMUST00000175332' => array(
'start' => '17795662',
'end' => '17795770',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir124a-2-201'
),
'ENSMUST00000178937' => array(
'start' => '18069326',
'end' => '18069392',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23726-201'
),
'ENSMUST00000177874' => array(
'start' => '17230637',
'end' => '17230976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5283-201'
),
'ENSMUST00000083241' => array(
'start' => '18177462',
'end' => '18177625',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23686-201'
),
'ENSMUST00000185804' => array(
'start' => '17795744',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-006'
),
'ENSMUST00000186746' => array(
'start' => '17793920',
'end' => '17795405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-002'
),
'ENSMUST00000186923' => array(
'start' => '17793945',
'end' => '17799500',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-005'
),
'ENSMUST00000188983' => array(
'start' => '17789921',
'end' => '17800073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-001'
),
'ENSMUST00000189467' => array(
'start' => '17794896',
'end' => '17808970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-007'
),
'ENSMUST00000189754' => array(
'start' => '17793928',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-003'
),
'ENSMUST00000189868' => array(
'start' => '17789957',
'end' => '17799531',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-004'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
'ENSG00000185728' => array(
[maximum depth reached]
),
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
),
'ENSG00000261542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Brain',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Lung',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Lung',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Brain',
(int) 82 => 'Lung',
(int) 83 => 'Testis',
(int) 84 => 'Brain',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Muscle',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis'
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
'ENSG00000172817' => array(
[maximum depth reached]
),
'ENSG00000180828' => array(
[maximum depth reached]
),
'ENSG00000253231' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253750' => array(
[maximum depth reached]
),
'ENSG00000254006' => array(
[maximum depth reached]
),
'ENSG00000254102' => array(
[maximum depth reached]
),
'ENSG00000254330' => array(
[maximum depth reached]
),
'ENSG00000254377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Kidney',
(int) 29 => 'Adipose',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Brain',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Lung',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Adrenal',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Lung',
(int) 61 => 'Adipose',
(int) 62 => 'Liver',
(int) 63 => 'Muscle',
(int) 64 => 'Testis',
(int) 65 => 'Breast',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Brain'
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
'ENSG00000213873' => array(
[maximum depth reached]
),
'ENSG00000239261' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Brain'
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
'ENSDARG00000057939' => array(
[maximum depth reached]
),
'ENSDARG00000058039' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Brain'
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025128' => array(
[maximum depth reached]
),
'ENSMUSG00000027564' => array(
[maximum depth reached]
),
'ENSMUSG00000039519' => array(
[maximum depth reached]
),
'ENSMUSG00000074674' => array(
[maximum depth reached]
),
'ENSMUSG00000082896' => array(
[maximum depth reached]
),
'ENSMUSG00000087893' => array(
[maximum depth reached]
),
'ENSMUSG00000093073' => array(
[maximum depth reached]
),
'ENSMUSG00000096391' => array(
[maximum depth reached]
),
'ENSMUSG00000100252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000185728' => 'YTH domain family, member 3',
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000241964' => 'RNA, 7SL, cytoplasmic 135, pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSG00000261542' => null,
'ENSG00000172817' => 'cytochrome P450, family 7, subfamily B, polypeptide 1',
'ENSG00000180828' => 'basic helix-loop-helix family, member e22',
'ENSG00000207816' => 'microRNA 124-2',
'ENSG00000253231' => 'cytochrome c oxidase subunit VIc pseudogene 8',
'ENSG00000253750' => null,
'ENSG00000253800' => null,
'ENSG00000254006' => null,
'ENSG00000254102' => null,
'ENSG00000254330' => null,
'ENSG00000254377' => 'MIR124-2 host gene (non-protein coding)',
'ENSG00000213873' => null,
'ENSG00000239261' => 'ribosomal protein L31 pseudogene 41',
'ENSG00000253493' => null,
'ENSDARG00000057939' => 'YTH domain family 3',
'ENSDARG00000058039' => 'basic helix-loop-helix family, member e22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'basic helix-loop-helix family, member e22',
'ENSMUSG00000027564' => 'cysteine-rich perinuclear theca 12',
'ENSMUSG00000039519' => 'cytochrome P450, family 7, subfamily b, polypeptide 1',
'ENSMUSG00000040217' => 'predicted gene 6369',
'ENSMUSG00000074674' => null,
'ENSMUSG00000082896' => 'predicted gene 5844',
'ENSMUSG00000087893' => 'predicted gene, 23441',
'ENSMUSG00000088541' => 'predicted gene, 24963',
'ENSMUSG00000088644' => 'predicted gene, 26485',
'ENSMUSG00000093073' => 'microRNA 124a-2',
'ENSMUSG00000094983' => 'predicted gene, 23726',
'ENSMUSG00000095827' => 'predicted gene 5283',
'ENSMUSG00000096391' => 'predicted gene, 23686',
'ENSMUSG00000100252' => 'Mir124-2 host gene (non-protein coding)'
)
$gene_name_arr = array(
'ENSG00000185728' => 'YTHDF3',
'ENSG00000215096' => 'IFITM8P',
'ENSG00000241964' => 'RN7SL135P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSG00000261542' => 'RP11-16E18.3',
'ENSG00000172817' => 'CYP7B1',
'ENSG00000180828' => 'BHLHE22',
'ENSG00000207816' => 'MIR124-2',
'ENSG00000253231' => 'COX6CP8',
'ENSG00000253750' => 'RP11-21C4.4',
'ENSG00000253800' => 'RP11-21C4.5',
'ENSG00000254006' => 'RP11-1D12.2',
'ENSG00000254102' => 'RP11-21C4.1',
'ENSG00000254330' => 'RP11-1D12.1',
'ENSG00000254377' => 'MIR124-2HG',
'ENSG00000213873' => 'RP11-678D18.1',
'ENSG00000239261' => 'RPL31P41',
'ENSG00000253493' => 'RP11-89A16.1',
'ENSDARG00000057939' => 'ythdf3',
'ENSDARG00000058039' => 'bhlhe22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'Bhlhe22',
'ENSMUSG00000027564' => 'Cypt12',
'ENSMUSG00000039519' => 'Cyp7b1',
'ENSMUSG00000040217' => 'Gm6369',
'ENSMUSG00000074674' => 'Gm10742',
'ENSMUSG00000082896' => 'Gm5844',
'ENSMUSG00000087893' => 'Gm23441',
'ENSMUSG00000088541' => 'Gm24963',
'ENSMUSG00000088644' => 'Gm26485',
'ENSMUSG00000093073' => 'Mir124a-2',
'ENSMUSG00000094983' => 'Gm23726',
'ENSMUSG00000095827' => 'Gm5283',
'ENSMUSG00000096391' => 'Gm23686',
'ENSMUSG00000100252' => 'RP23-137I13.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63209731',
'seq_end' => '63773909',
'region_length' => '564178',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63773910',
'seq_end' => '64847207',
'region_length' => '1073297',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '64847530',
'seq_end' => '65455399',
'region_length' => '607869',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16214007',
'seq_end' => '16214366',
'region_length' => '359',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0005',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '24907372',
'seq_end' => '25294956',
'region_length' => '387584',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0006',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16820555',
'seq_end' => '18937830',
'region_length' => '2117275',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 33 => 'Brain',
(int) 68 => 'Breast',
(int) 85 => 'Colon',
(int) 102 => 'Heart',
(int) 121 => 'Kidney',
(int) 142 => 'Liver',
(int) 164 => 'Lung',
(int) 181 => 'Muscle',
(int) 191 => 'Ovary',
(int) 212 => 'Placenta',
(int) 226 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 87
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000517371' => array(
'start' => '63168654',
'end' => '63212445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-010'
),
'ENST00000518373' => array(
'start' => '63187530',
'end' => '63189042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'YTHDF3-013'
),
'ENST00000519428' => array(
'start' => '63168621',
'end' => '63175700',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-007'
),
'ENST00000522282' => array(
'start' => '63168562',
'end' => '63169491',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-004'
),
'ENST00000539294' => array(
'start' => '63168553',
'end' => '63212786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-001'
),
'ENST00000612880' => array(
'start' => '63168687',
'end' => '63186499',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-008'
),
'ENST00000613853' => array(
'start' => '63169020',
'end' => '63186360',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-012'
),
'ENST00000615676' => array(
'start' => '63168655',
'end' => '63212786',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'YTHDF3-003'
),
'ENST00000617200' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-201'
),
'ENST00000617952' => array(
'start' => '63168961',
'end' => '63186261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-005'
),
'ENST00000619337' => array(
'start' => '63169003',
'end' => '63186471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-011'
),
'ENST00000621413' => array(
'start' => '63168661',
'end' => '63209955',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-014'
),
'ENST00000621820' => array(
'start' => '63169022',
'end' => '63210105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-002'
),
'ENST00000621890' => array(
'start' => '63169003',
'end' => '63210167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-006'
),
'ENST00000621957' => array(
'start' => '63168652',
'end' => '63210115',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-015'
),
'ENST00000623280' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-202'
),
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000490144' => array(
'start' => '63234634',
'end' => '63234911',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL135P-201'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENST00000569835' => array(
'start' => '63215981',
'end' => '63218034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-16E18.3-001'
),
'ENST00000310193' => array(
'start' => '64596135',
'end' => '64798761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CYP7B1-001'
),
'ENST00000523954' => array(
'start' => '64587763',
'end' => '64615814',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CYP7B1-002'
),
'ENST00000321870' => array(
'start' => '64580367',
'end' => '64583628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BHLHE22-001'
),
'ENST00000385081' => array(
'start' => '64379149',
'end' => '64379257',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR124-2-201'
),
'ENST00000522620' => array(
'start' => '64331927',
'end' => '64332152',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP8-001'
),
'ENST00000520009' => array(
'start' => '64554236',
'end' => '64554475',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.4-001'
),
'ENST00000517809' => array(
'start' => '64570913',
'end' => '64571332',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.5-001'
),
'ENST00000522106' => array(
'start' => '64801236',
'end' => '64817573',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-001'
),
'ENST00000523769' => array(
'start' => '64801358',
'end' => '64805700',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-002'
),
'ENST00000517909' => array(
'start' => '64574311',
'end' => '64581888',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-001'
),
'ENST00000520834' => array(
'start' => '64574306',
'end' => '64577263',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-002'
),
'ENST00000519680' => array(
'start' => '64703774',
'end' => '64734459',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-1D12.1-001'
),
'ENST00000519741' => array(
'start' => '64377960',
'end' => '64383286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-005'
),
'ENST00000520799' => array(
'start' => '64373328',
'end' => '64378834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-001'
),
'ENST00000521441' => array(
'start' => '64373328',
'end' => '64383787',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-004'
),
'ENST00000524060' => array(
'start' => '64377327',
'end' => '64378435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-002'
),
'ENST00000524284' => array(
'start' => '64377333',
'end' => '64378478',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-003'
),
'ENST00000518241' => array(
'start' => '65377592',
'end' => '65378111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-678D18.1-001'
),
'ENST00000477967' => array(
'start' => '65155407',
'end' => '65155778',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL31P41-001'
),
'ENST00000520501' => array(
'start' => '64973488',
'end' => '64973848',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-89A16.1-001'
),
'ENSDART00000122294' => array(
'start' => '24893699',
'end' => '24908298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ythdf3-001'
),
'ENSDART00000080840' => array(
'start' => '25069506',
'end' => '25071293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-201'
),
'ENSDART00000147658' => array(
'start' => '25069289',
'end' => '25071294',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-001'
),
'ENSDART00000116338' => array(
'start' => '25063580',
'end' => '25063696',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-124-3.1-201'
),
'ENSDART00000154149' => array(
'start' => '25024823',
'end' => '25059751',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-002'
),
'ENSDART00000156423' => array(
'start' => '25024823',
'end' => '25110970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-001'
),
'ENSMUST00000026120' => array(
'start' => '18054174',
'end' => '18057517',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Bhlhe22-001'
),
'ENSMUST00000029080' => array(
'start' => '17948444',
'end' => '17948952',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cypt12-201'
),
'ENSMUST00000035625' => array(
'start' => '18071950',
'end' => '18243338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cyp7b1-201'
),
'ENSMUST00000069626' => array(
'start' => '18533861',
'end' => '18534289',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6369-201'
),
'ENSMUST00000099198' => array(
'start' => '17783514',
'end' => '17786898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10742-201'
),
'ENSMUST00000119417' => array(
'start' => '18008806',
'end' => '18010996',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5844-001'
),
'ENSMUST00000157268' => array(
'start' => '17803621',
'end' => '17803747',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23441-201'
),
'ENSMUST00000157916' => array(
'start' => '17251301',
'end' => '17251444',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24963-201'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
),
'ENSMUST00000175332' => array(
'start' => '17795662',
'end' => '17795770',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir124a-2-201'
),
'ENSMUST00000178937' => array(
'start' => '18069326',
'end' => '18069392',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23726-201'
),
'ENSMUST00000177874' => array(
'start' => '17230637',
'end' => '17230976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5283-201'
),
'ENSMUST00000083241' => array(
'start' => '18177462',
'end' => '18177625',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23686-201'
),
'ENSMUST00000185804' => array(
'start' => '17795744',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-006'
),
'ENSMUST00000186746' => array(
'start' => '17793920',
'end' => '17795405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-002'
),
'ENSMUST00000186923' => array(
'start' => '17793945',
'end' => '17799500',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-005'
),
'ENSMUST00000188983' => array(
'start' => '17789921',
'end' => '17800073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-001'
),
'ENSMUST00000189467' => array(
'start' => '17794896',
'end' => '17808970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-007'
),
'ENSMUST00000189754' => array(
'start' => '17793928',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-003'
),
'ENSMUST00000189868' => array(
'start' => '17789957',
'end' => '17799531',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-004'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
'ENSG00000185728' => array(
[maximum depth reached]
),
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
),
'ENSG00000261542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Brain',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Lung',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Lung',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Brain',
(int) 82 => 'Lung',
(int) 83 => 'Testis',
(int) 84 => 'Brain',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Muscle',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis'
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
'ENSG00000172817' => array(
[maximum depth reached]
),
'ENSG00000180828' => array(
[maximum depth reached]
),
'ENSG00000253231' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253750' => array(
[maximum depth reached]
),
'ENSG00000254006' => array(
[maximum depth reached]
),
'ENSG00000254102' => array(
[maximum depth reached]
),
'ENSG00000254330' => array(
[maximum depth reached]
),
'ENSG00000254377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Kidney',
(int) 29 => 'Adipose',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Brain',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Lung',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Adrenal',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Lung',
(int) 61 => 'Adipose',
(int) 62 => 'Liver',
(int) 63 => 'Muscle',
(int) 64 => 'Testis',
(int) 65 => 'Breast',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Brain'
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
'ENSG00000213873' => array(
[maximum depth reached]
),
'ENSG00000239261' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Brain'
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
'ENSDARG00000057939' => array(
[maximum depth reached]
),
'ENSDARG00000058039' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Brain'
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025128' => array(
[maximum depth reached]
),
'ENSMUSG00000027564' => array(
[maximum depth reached]
),
'ENSMUSG00000039519' => array(
[maximum depth reached]
),
'ENSMUSG00000074674' => array(
[maximum depth reached]
),
'ENSMUSG00000082896' => array(
[maximum depth reached]
),
'ENSMUSG00000087893' => array(
[maximum depth reached]
),
'ENSMUSG00000093073' => array(
[maximum depth reached]
),
'ENSMUSG00000096391' => array(
[maximum depth reached]
),
'ENSMUSG00000100252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16214007',
'seq_end' => '16214366',
'region_length' => '359',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
)
$gene_el = array(
'ENST00000477967' => array(
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000239261'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000477967'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000185728' => 'YTH domain family, member 3',
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000241964' => 'RNA, 7SL, cytoplasmic 135, pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSG00000261542' => null,
'ENSG00000172817' => 'cytochrome P450, family 7, subfamily B, polypeptide 1',
'ENSG00000180828' => 'basic helix-loop-helix family, member e22',
'ENSG00000207816' => 'microRNA 124-2',
'ENSG00000253231' => 'cytochrome c oxidase subunit VIc pseudogene 8',
'ENSG00000253750' => null,
'ENSG00000253800' => null,
'ENSG00000254006' => null,
'ENSG00000254102' => null,
'ENSG00000254330' => null,
'ENSG00000254377' => 'MIR124-2 host gene (non-protein coding)',
'ENSG00000213873' => null,
'ENSG00000239261' => 'ribosomal protein L31 pseudogene 41',
'ENSG00000253493' => null,
'ENSDARG00000057939' => 'YTH domain family 3',
'ENSDARG00000058039' => 'basic helix-loop-helix family, member e22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'basic helix-loop-helix family, member e22',
'ENSMUSG00000027564' => 'cysteine-rich perinuclear theca 12',
'ENSMUSG00000039519' => 'cytochrome P450, family 7, subfamily b, polypeptide 1',
'ENSMUSG00000040217' => 'predicted gene 6369',
'ENSMUSG00000074674' => null,
'ENSMUSG00000082896' => 'predicted gene 5844',
'ENSMUSG00000087893' => 'predicted gene, 23441',
'ENSMUSG00000088541' => 'predicted gene, 24963',
'ENSMUSG00000088644' => 'predicted gene, 26485',
'ENSMUSG00000093073' => 'microRNA 124a-2',
'ENSMUSG00000094983' => 'predicted gene, 23726',
'ENSMUSG00000095827' => 'predicted gene 5283',
'ENSMUSG00000096391' => 'predicted gene, 23686',
'ENSMUSG00000100252' => 'Mir124-2 host gene (non-protein coding)'
),
'gene_name_arr' => array(
'ENSG00000185728' => 'YTHDF3',
'ENSG00000215096' => 'IFITM8P',
'ENSG00000241964' => 'RN7SL135P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSG00000261542' => 'RP11-16E18.3',
'ENSG00000172817' => 'CYP7B1',
'ENSG00000180828' => 'BHLHE22',
'ENSG00000207816' => 'MIR124-2',
'ENSG00000253231' => 'COX6CP8',
'ENSG00000253750' => 'RP11-21C4.4',
'ENSG00000253800' => 'RP11-21C4.5',
'ENSG00000254006' => 'RP11-1D12.2',
'ENSG00000254102' => 'RP11-21C4.1',
'ENSG00000254330' => 'RP11-1D12.1',
'ENSG00000254377' => 'MIR124-2HG',
'ENSG00000213873' => 'RP11-678D18.1',
'ENSG00000239261' => 'RPL31P41',
'ENSG00000253493' => 'RP11-89A16.1',
'ENSDARG00000057939' => 'ythdf3',
'ENSDARG00000058039' => 'bhlhe22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'Bhlhe22',
'ENSMUSG00000027564' => 'Cypt12',
'ENSMUSG00000039519' => 'Cyp7b1',
'ENSMUSG00000040217' => 'Gm6369',
'ENSMUSG00000074674' => 'Gm10742',
'ENSMUSG00000082896' => 'Gm5844',
'ENSMUSG00000087893' => 'Gm23441',
'ENSMUSG00000088541' => 'Gm24963',
'ENSMUSG00000088644' => 'Gm26485',
'ENSMUSG00000093073' => 'Mir124a-2',
'ENSMUSG00000094983' => 'Gm23726',
'ENSMUSG00000095827' => 'Gm5283',
'ENSMUSG00000096391' => 'Gm23686',
'ENSMUSG00000100252' => 'RP23-137I13.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 33 => 'Brain',
(int) 68 => 'Breast',
(int) 85 => 'Colon',
(int) 102 => 'Heart',
(int) 121 => 'Kidney',
(int) 142 => 'Liver',
(int) 164 => 'Lung',
(int) 181 => 'Muscle',
(int) 191 => 'Ovary',
(int) 212 => 'Placenta',
(int) 226 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 87,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000517371' => array(
'start' => '63168654',
'end' => '63212445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-010'
),
'ENST00000518373' => array(
'start' => '63187530',
'end' => '63189042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'YTHDF3-013'
),
'ENST00000519428' => array(
'start' => '63168621',
'end' => '63175700',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-007'
),
'ENST00000522282' => array(
'start' => '63168562',
'end' => '63169491',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-004'
),
'ENST00000539294' => array(
'start' => '63168553',
'end' => '63212786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-001'
),
'ENST00000612880' => array(
'start' => '63168687',
'end' => '63186499',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-008'
),
'ENST00000613853' => array(
'start' => '63169020',
'end' => '63186360',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-012'
),
'ENST00000615676' => array(
'start' => '63168655',
'end' => '63212786',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'YTHDF3-003'
),
'ENST00000617200' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-201'
),
'ENST00000617952' => array(
'start' => '63168961',
'end' => '63186261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-005'
),
'ENST00000619337' => array(
'start' => '63169003',
'end' => '63186471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-011'
),
'ENST00000621413' => array(
'start' => '63168661',
'end' => '63209955',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-014'
),
'ENST00000621820' => array(
'start' => '63169022',
'end' => '63210105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-002'
),
'ENST00000621890' => array(
'start' => '63169003',
'end' => '63210167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-006'
),
'ENST00000621957' => array(
'start' => '63168652',
'end' => '63210115',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-015'
),
'ENST00000623280' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-202'
),
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000490144' => array(
'start' => '63234634',
'end' => '63234911',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL135P-201'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENST00000569835' => array(
'start' => '63215981',
'end' => '63218034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-16E18.3-001'
),
'ENST00000310193' => array(
'start' => '64596135',
'end' => '64798761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CYP7B1-001'
),
'ENST00000523954' => array(
'start' => '64587763',
'end' => '64615814',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CYP7B1-002'
),
'ENST00000321870' => array(
'start' => '64580367',
'end' => '64583628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BHLHE22-001'
),
'ENST00000385081' => array(
'start' => '64379149',
'end' => '64379257',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR124-2-201'
),
'ENST00000522620' => array(
'start' => '64331927',
'end' => '64332152',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP8-001'
),
'ENST00000520009' => array(
'start' => '64554236',
'end' => '64554475',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.4-001'
),
'ENST00000517809' => array(
'start' => '64570913',
'end' => '64571332',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.5-001'
),
'ENST00000522106' => array(
'start' => '64801236',
'end' => '64817573',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-001'
),
'ENST00000523769' => array(
'start' => '64801358',
'end' => '64805700',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-002'
),
'ENST00000517909' => array(
'start' => '64574311',
'end' => '64581888',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-001'
),
'ENST00000520834' => array(
'start' => '64574306',
'end' => '64577263',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-002'
),
'ENST00000519680' => array(
'start' => '64703774',
'end' => '64734459',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-1D12.1-001'
),
'ENST00000519741' => array(
'start' => '64377960',
'end' => '64383286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-005'
),
'ENST00000520799' => array(
'start' => '64373328',
'end' => '64378834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-001'
),
'ENST00000521441' => array(
'start' => '64373328',
'end' => '64383787',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-004'
),
'ENST00000524060' => array(
'start' => '64377327',
'end' => '64378435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-002'
),
'ENST00000524284' => array(
'start' => '64377333',
'end' => '64378478',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-003'
),
'ENST00000518241' => array(
'start' => '65377592',
'end' => '65378111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-678D18.1-001'
),
'ENST00000477967' => array(
'start' => '65155407',
'end' => '65155778',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL31P41-001'
),
'ENST00000520501' => array(
'start' => '64973488',
'end' => '64973848',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-89A16.1-001'
),
'ENSDART00000122294' => array(
'start' => '24893699',
'end' => '24908298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ythdf3-001'
),
'ENSDART00000080840' => array(
'start' => '25069506',
'end' => '25071293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-201'
),
'ENSDART00000147658' => array(
'start' => '25069289',
'end' => '25071294',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-001'
),
'ENSDART00000116338' => array(
'start' => '25063580',
'end' => '25063696',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-124-3.1-201'
),
'ENSDART00000154149' => array(
'start' => '25024823',
'end' => '25059751',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-002'
),
'ENSDART00000156423' => array(
'start' => '25024823',
'end' => '25110970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-001'
),
'ENSMUST00000026120' => array(
'start' => '18054174',
'end' => '18057517',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Bhlhe22-001'
),
'ENSMUST00000029080' => array(
'start' => '17948444',
'end' => '17948952',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cypt12-201'
),
'ENSMUST00000035625' => array(
'start' => '18071950',
'end' => '18243338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cyp7b1-201'
),
'ENSMUST00000069626' => array(
'start' => '18533861',
'end' => '18534289',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6369-201'
),
'ENSMUST00000099198' => array(
'start' => '17783514',
'end' => '17786898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10742-201'
),
'ENSMUST00000119417' => array(
'start' => '18008806',
'end' => '18010996',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5844-001'
),
'ENSMUST00000157268' => array(
'start' => '17803621',
'end' => '17803747',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23441-201'
),
'ENSMUST00000157916' => array(
'start' => '17251301',
'end' => '17251444',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24963-201'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
),
'ENSMUST00000175332' => array(
'start' => '17795662',
'end' => '17795770',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir124a-2-201'
),
'ENSMUST00000178937' => array(
'start' => '18069326',
'end' => '18069392',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23726-201'
),
'ENSMUST00000177874' => array(
'start' => '17230637',
'end' => '17230976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5283-201'
),
'ENSMUST00000083241' => array(
'start' => '18177462',
'end' => '18177625',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23686-201'
),
'ENSMUST00000185804' => array(
'start' => '17795744',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-006'
),
'ENSMUST00000186746' => array(
'start' => '17793920',
'end' => '17795405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-002'
),
'ENSMUST00000186923' => array(
'start' => '17793945',
'end' => '17799500',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-005'
),
'ENSMUST00000188983' => array(
'start' => '17789921',
'end' => '17800073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-001'
),
'ENSMUST00000189467' => array(
'start' => '17794896',
'end' => '17808970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-007'
),
'ENSMUST00000189754' => array(
'start' => '17793928',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-003'
),
'ENSMUST00000189868' => array(
'start' => '17789957',
'end' => '17799531',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-004'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
'ENSG00000185728' => array(
[maximum depth reached]
),
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
),
'ENSG00000261542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Brain',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Lung',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Lung',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Brain',
(int) 82 => 'Lung',
(int) 83 => 'Testis',
(int) 84 => 'Brain',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Muscle',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis'
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
'ENSG00000172817' => array(
[maximum depth reached]
),
'ENSG00000180828' => array(
[maximum depth reached]
),
'ENSG00000253231' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253750' => array(
[maximum depth reached]
),
'ENSG00000254006' => array(
[maximum depth reached]
),
'ENSG00000254102' => array(
[maximum depth reached]
),
'ENSG00000254330' => array(
[maximum depth reached]
),
'ENSG00000254377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Kidney',
(int) 29 => 'Adipose',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Brain',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Lung',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Adrenal',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Lung',
(int) 61 => 'Adipose',
(int) 62 => 'Liver',
(int) 63 => 'Muscle',
(int) 64 => 'Testis',
(int) 65 => 'Breast',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Brain'
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
'ENSG00000213873' => array(
[maximum depth reached]
),
'ENSG00000239261' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Brain'
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
'ENSDARG00000057939' => array(
[maximum depth reached]
),
'ENSDARG00000058039' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Brain'
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025128' => array(
[maximum depth reached]
),
'ENSMUSG00000027564' => array(
[maximum depth reached]
),
'ENSMUSG00000039519' => array(
[maximum depth reached]
),
'ENSMUSG00000074674' => array(
[maximum depth reached]
),
'ENSMUSG00000082896' => array(
[maximum depth reached]
),
'ENSMUSG00000087893' => array(
[maximum depth reached]
),
'ENSMUSG00000093073' => array(
[maximum depth reached]
),
'ENSMUSG00000096391' => array(
[maximum depth reached]
),
'ENSMUSG00000100252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000185728' => 'YTH domain family, member 3',
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000241964' => 'RNA, 7SL, cytoplasmic 135, pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSG00000261542' => null,
'ENSG00000172817' => 'cytochrome P450, family 7, subfamily B, polypeptide 1',
'ENSG00000180828' => 'basic helix-loop-helix family, member e22',
'ENSG00000207816' => 'microRNA 124-2',
'ENSG00000253231' => 'cytochrome c oxidase subunit VIc pseudogene 8',
'ENSG00000253750' => null,
'ENSG00000253800' => null,
'ENSG00000254006' => null,
'ENSG00000254102' => null,
'ENSG00000254330' => null,
'ENSG00000254377' => 'MIR124-2 host gene (non-protein coding)',
'ENSG00000213873' => null,
'ENSG00000239261' => 'ribosomal protein L31 pseudogene 41',
'ENSG00000253493' => null,
'ENSDARG00000057939' => 'YTH domain family 3',
'ENSDARG00000058039' => 'basic helix-loop-helix family, member e22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'basic helix-loop-helix family, member e22',
'ENSMUSG00000027564' => 'cysteine-rich perinuclear theca 12',
'ENSMUSG00000039519' => 'cytochrome P450, family 7, subfamily b, polypeptide 1',
'ENSMUSG00000040217' => 'predicted gene 6369',
'ENSMUSG00000074674' => null,
'ENSMUSG00000082896' => 'predicted gene 5844',
'ENSMUSG00000087893' => 'predicted gene, 23441',
'ENSMUSG00000088541' => 'predicted gene, 24963',
'ENSMUSG00000088644' => 'predicted gene, 26485',
'ENSMUSG00000093073' => 'microRNA 124a-2',
'ENSMUSG00000094983' => 'predicted gene, 23726',
'ENSMUSG00000095827' => 'predicted gene 5283',
'ENSMUSG00000096391' => 'predicted gene, 23686',
'ENSMUSG00000100252' => 'Mir124-2 host gene (non-protein coding)'
)
$gene_name_arr = array(
'ENSG00000185728' => 'YTHDF3',
'ENSG00000215096' => 'IFITM8P',
'ENSG00000241964' => 'RN7SL135P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSG00000261542' => 'RP11-16E18.3',
'ENSG00000172817' => 'CYP7B1',
'ENSG00000180828' => 'BHLHE22',
'ENSG00000207816' => 'MIR124-2',
'ENSG00000253231' => 'COX6CP8',
'ENSG00000253750' => 'RP11-21C4.4',
'ENSG00000253800' => 'RP11-21C4.5',
'ENSG00000254006' => 'RP11-1D12.2',
'ENSG00000254102' => 'RP11-21C4.1',
'ENSG00000254330' => 'RP11-1D12.1',
'ENSG00000254377' => 'MIR124-2HG',
'ENSG00000213873' => 'RP11-678D18.1',
'ENSG00000239261' => 'RPL31P41',
'ENSG00000253493' => 'RP11-89A16.1',
'ENSDARG00000057939' => 'ythdf3',
'ENSDARG00000058039' => 'bhlhe22',
'ENSDARG00000081423' => 'dre-mir-124-3',
'ENSDARG00000097984' => 'si:ch211-277b21.2',
'ENSMUSG00000025128' => 'Bhlhe22',
'ENSMUSG00000027564' => 'Cypt12',
'ENSMUSG00000039519' => 'Cyp7b1',
'ENSMUSG00000040217' => 'Gm6369',
'ENSMUSG00000074674' => 'Gm10742',
'ENSMUSG00000082896' => 'Gm5844',
'ENSMUSG00000087893' => 'Gm23441',
'ENSMUSG00000088541' => 'Gm24963',
'ENSMUSG00000088644' => 'Gm26485',
'ENSMUSG00000093073' => 'Mir124a-2',
'ENSMUSG00000094983' => 'Gm23726',
'ENSMUSG00000095827' => 'Gm5283',
'ENSMUSG00000096391' => 'Gm23686',
'ENSMUSG00000100252' => 'RP23-137I13.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63209731',
'seq_end' => '63773909',
'region_length' => '564178',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63773910',
'seq_end' => '64847207',
'region_length' => '1073297',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '64847530',
'seq_end' => '65455399',
'region_length' => '607869',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16214007',
'seq_end' => '16214366',
'region_length' => '359',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0005',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '24907372',
'seq_end' => '25294956',
'region_length' => '387584',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0006',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16820555',
'seq_end' => '18937830',
'region_length' => '2117275',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 33 => 'Brain',
(int) 68 => 'Breast',
(int) 85 => 'Colon',
(int) 102 => 'Heart',
(int) 121 => 'Kidney',
(int) 142 => 'Liver',
(int) 164 => 'Lung',
(int) 181 => 'Muscle',
(int) 191 => 'Ovary',
(int) 212 => 'Placenta',
(int) 226 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 87
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000517371' => array(
'start' => '63168654',
'end' => '63212445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-010'
),
'ENST00000518373' => array(
'start' => '63187530',
'end' => '63189042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'YTHDF3-013'
),
'ENST00000519428' => array(
'start' => '63168621',
'end' => '63175700',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-007'
),
'ENST00000522282' => array(
'start' => '63168562',
'end' => '63169491',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'YTHDF3-004'
),
'ENST00000539294' => array(
'start' => '63168553',
'end' => '63212786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-001'
),
'ENST00000612880' => array(
'start' => '63168687',
'end' => '63186499',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-008'
),
'ENST00000613853' => array(
'start' => '63169020',
'end' => '63186360',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-012'
),
'ENST00000615676' => array(
'start' => '63168655',
'end' => '63212786',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'YTHDF3-003'
),
'ENST00000617200' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-201'
),
'ENST00000617952' => array(
'start' => '63168961',
'end' => '63186261',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-005'
),
'ENST00000619337' => array(
'start' => '63169003',
'end' => '63186471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-011'
),
'ENST00000621413' => array(
'start' => '63168661',
'end' => '63209955',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-014'
),
'ENST00000621820' => array(
'start' => '63169022',
'end' => '63210105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-002'
),
'ENST00000621890' => array(
'start' => '63169003',
'end' => '63210167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-006'
),
'ENST00000621957' => array(
'start' => '63168652',
'end' => '63210115',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-015'
),
'ENST00000623280' => array(
'start' => '63168553',
'end' => '63212785',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'YTHDF3-202'
),
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000490144' => array(
'start' => '63234634',
'end' => '63234911',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL135P-201'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENST00000569835' => array(
'start' => '63215981',
'end' => '63218034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-16E18.3-001'
),
'ENST00000310193' => array(
'start' => '64596135',
'end' => '64798761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CYP7B1-001'
),
'ENST00000523954' => array(
'start' => '64587763',
'end' => '64615814',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CYP7B1-002'
),
'ENST00000321870' => array(
'start' => '64580367',
'end' => '64583628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BHLHE22-001'
),
'ENST00000385081' => array(
'start' => '64379149',
'end' => '64379257',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR124-2-201'
),
'ENST00000522620' => array(
'start' => '64331927',
'end' => '64332152',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP8-001'
),
'ENST00000520009' => array(
'start' => '64554236',
'end' => '64554475',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.4-001'
),
'ENST00000517809' => array(
'start' => '64570913',
'end' => '64571332',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-21C4.5-001'
),
'ENST00000522106' => array(
'start' => '64801236',
'end' => '64817573',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-001'
),
'ENST00000523769' => array(
'start' => '64801358',
'end' => '64805700',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-1D12.2-002'
),
'ENST00000517909' => array(
'start' => '64574311',
'end' => '64581888',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-001'
),
'ENST00000520834' => array(
'start' => '64574306',
'end' => '64577263',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-21C4.1-002'
),
'ENST00000519680' => array(
'start' => '64703774',
'end' => '64734459',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-1D12.1-001'
),
'ENST00000519741' => array(
'start' => '64377960',
'end' => '64383286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-005'
),
'ENST00000520799' => array(
'start' => '64373328',
'end' => '64378834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-001'
),
'ENST00000521441' => array(
'start' => '64373328',
'end' => '64383787',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-004'
),
'ENST00000524060' => array(
'start' => '64377327',
'end' => '64378435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-002'
),
'ENST00000524284' => array(
'start' => '64377333',
'end' => '64378478',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'MIR124-2HG-003'
),
'ENST00000518241' => array(
'start' => '65377592',
'end' => '65378111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-678D18.1-001'
),
'ENST00000477967' => array(
'start' => '65155407',
'end' => '65155778',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL31P41-001'
),
'ENST00000520501' => array(
'start' => '64973488',
'end' => '64973848',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-89A16.1-001'
),
'ENSDART00000122294' => array(
'start' => '24893699',
'end' => '24908298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ythdf3-001'
),
'ENSDART00000080840' => array(
'start' => '25069506',
'end' => '25071293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-201'
),
'ENSDART00000147658' => array(
'start' => '25069289',
'end' => '25071294',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'bhlhe22-001'
),
'ENSDART00000116338' => array(
'start' => '25063580',
'end' => '25063696',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-124-3.1-201'
),
'ENSDART00000154149' => array(
'start' => '25024823',
'end' => '25059751',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-002'
),
'ENSDART00000156423' => array(
'start' => '25024823',
'end' => '25110970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-277b21.2-001'
),
'ENSMUST00000026120' => array(
'start' => '18054174',
'end' => '18057517',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Bhlhe22-001'
),
'ENSMUST00000029080' => array(
'start' => '17948444',
'end' => '17948952',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cypt12-201'
),
'ENSMUST00000035625' => array(
'start' => '18071950',
'end' => '18243338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cyp7b1-201'
),
'ENSMUST00000069626' => array(
'start' => '18533861',
'end' => '18534289',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6369-201'
),
'ENSMUST00000099198' => array(
'start' => '17783514',
'end' => '17786898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10742-201'
),
'ENSMUST00000119417' => array(
'start' => '18008806',
'end' => '18010996',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5844-001'
),
'ENSMUST00000157268' => array(
'start' => '17803621',
'end' => '17803747',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23441-201'
),
'ENSMUST00000157916' => array(
'start' => '17251301',
'end' => '17251444',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24963-201'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
),
'ENSMUST00000175332' => array(
'start' => '17795662',
'end' => '17795770',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir124a-2-201'
),
'ENSMUST00000178937' => array(
'start' => '18069326',
'end' => '18069392',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23726-201'
),
'ENSMUST00000177874' => array(
'start' => '17230637',
'end' => '17230976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5283-201'
),
'ENSMUST00000083241' => array(
'start' => '18177462',
'end' => '18177625',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23686-201'
),
'ENSMUST00000185804' => array(
'start' => '17795744',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-006'
),
'ENSMUST00000186746' => array(
'start' => '17793920',
'end' => '17795405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-002'
),
'ENSMUST00000186923' => array(
'start' => '17793945',
'end' => '17799500',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-005'
),
'ENSMUST00000188983' => array(
'start' => '17789921',
'end' => '17800073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-001'
),
'ENSMUST00000189467' => array(
'start' => '17794896',
'end' => '17808970',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-007'
),
'ENSMUST00000189754' => array(
'start' => '17793928',
'end' => '17799587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-003'
),
'ENSMUST00000189868' => array(
'start' => '17789957',
'end' => '17799531',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-137I13.1-004'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NS_0001' => array(
'genes_in_region' => array(
'ENSG00000185728' => array(
[maximum depth reached]
),
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
),
'ENSG00000261542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Brain',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Lung',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Lung',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Brain',
(int) 82 => 'Lung',
(int) 83 => 'Testis',
(int) 84 => 'Brain',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Muscle',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis'
)
),
'CIL_0007NS_0002' => array(
'genes_in_region' => array(
'ENSG00000172817' => array(
[maximum depth reached]
),
'ENSG00000180828' => array(
[maximum depth reached]
),
'ENSG00000253231' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253750' => array(
[maximum depth reached]
),
'ENSG00000254006' => array(
[maximum depth reached]
),
'ENSG00000254102' => array(
[maximum depth reached]
),
'ENSG00000254330' => array(
[maximum depth reached]
),
'ENSG00000254377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Kidney',
(int) 29 => 'Adipose',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Brain',
(int) 39 => 'Testis',
(int) 40 => 'Adipose',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Lung',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Adrenal',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Lung',
(int) 61 => 'Adipose',
(int) 62 => 'Liver',
(int) 63 => 'Muscle',
(int) 64 => 'Testis',
(int) 65 => 'Breast',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Brain'
)
),
'CIL_0007NS_0003' => array(
'genes_in_region' => array(
'ENSG00000213873' => array(
[maximum depth reached]
),
'ENSG00000239261' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Brain'
)
),
'CIL_0007NS_0005' => array(
'genes_in_region' => array(
'ENSDARG00000057939' => array(
[maximum depth reached]
),
'ENSDARG00000058039' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Brain'
)
),
'CIL_0007NS_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000025128' => array(
[maximum depth reached]
),
'ENSMUSG00000027564' => array(
[maximum depth reached]
),
'ENSMUSG00000039519' => array(
[maximum depth reached]
),
'ENSMUSG00000074674' => array(
[maximum depth reached]
),
'ENSMUSG00000082896' => array(
[maximum depth reached]
),
'ENSMUSG00000087893' => array(
[maximum depth reached]
),
'ENSMUSG00000093073' => array(
[maximum depth reached]
),
'ENSMUSG00000096391' => array(
[maximum depth reached]
),
'ENSMUSG00000100252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Kidney',
(int) 60 => 'Brain',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Liver',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NS_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16214007',
'seq_end' => '16214366',
'region_length' => '359',
'region_type' => 'UCNEbase',
'el_id' => 'BHLHE22'
)
)
$gene_el = array(
'ENST00000477967' => array(
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000239261'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000477967'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(YTHDF3)