Notice (8): Undefined index: CIL_0007OB_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000105176' => 'URI1, prefoldin-like chaperone',
'ENSG00000198597' => 'zinc finger protein 536',
'ENSG00000223148' => null,
'ENSG00000242100' => 'ribosomal protein L9 pseudogene 32',
'ENSG00000261316' => null,
'ENSG00000266910' => null,
'ENSG00000267006' => null,
'ENSG00000267081' => null,
'ENSG00000267223' => null,
'ENSG00000267258' => null,
'ENSG00000267433' => null,
'ENSG00000267692' => 'TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3',
'ENSG00000267760' => null,
'ENSG00000278895' => null,
'ENSG00000280061' => null,
'ENSG00000121297' => 'teashirt zinc finger homeobox 3',
'ENSG00000200738' => 'RNA, 5S ribosomal pseudogene 472',
'ENSG00000201894' => 'RNA, U6 small nuclear 967, pseudogene',
'ENSG00000221504' => null,
'ENSG00000252780' => 'RNA, 5S ribosomal pseudogene 471',
'ENSG00000261400' => null,
'ENSG00000267012' => null,
'ENSG00000267094' => null,
'ENSG00000267133' => null,
'ENSG00000267204' => null,
'ENSG00000267378' => null,
'ENSG00000267407' => null,
'ENSG00000267465' => null,
'ENSG00000267489' => null,
'ENSG00000267599' => null,
'ENSG00000267636' => null,
'ENSG00000267662' => null,
'ENSG00000267684' => null,
'ENSG00000267777' => null,
'ENSG00000267779' => 'long intergenic non-protein coding RNA 1533',
'ENSG00000278875' => null,
'ENSMUSG00000021217' => 'teashirt zinc finger family member 3',
'ENSMUSG00000030421' => 'URI1, prefoldin-like chaperone',
'ENSMUSG00000043456' => 'zinc finger protein 536',
'ENSMUSG00000064591' => 'predicted gene, 22302',
'ENSMUSG00000066543' => 'ribosomal protein L17, pseudogene 9',
'ENSMUSG00000089273' => 'predicted gene, 24550',
'ENSMUSG00000093216' => 'predicted gene, 25247',
'ENSMUSG00000093359' => 'predicted gene, 23292',
'ENSMUSG00000093540' => 'RIKEN cDNA 4930505M18 gene',
'ENSMUSG00000098016' => 'predicted gene 9211',
'ENSMUSG00000099715' => 'predicted gene 28077',
'ENSMUSG00000100616' => 'predicted gene 28076',
'ENSMUSG00000100905' => 'predicted gene 28075',
'ENSMUSG00000101342' => 'predicted gene 28078',
'ENSMUSG00000101965' => 'predicted gene 29129',
'ENSDARG00000087394' => null,
'ENSDARG00000003263' => 'processing of precursor 4, ribonuclease P/MRP subunit',
'ENSDARG00000011133' => 'cyclin E1',
'ENSDARG00000015959' => 'teashirt zinc finger homeobox 3',
'ENSDARG00000022251' => 'zinc finger protein 536',
'ENSDARG00000027852' => 'pleckstrin homology domain containing, family F (with FYVE domain) member 1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S ribosomal RNA',
'ENSDARG00000085596' => 'Small nucleolar RNA U3',
'ENSDARG00000088089' => 'Uncharacterized protein',
'ENSDARG00000088500' => 'chromosome 19 open reading frame 12',
'ENSDARG00000089284' => '5S ribosomal RNA',
'ENSDARG00000091033' => '5S ribosomal RNA',
'ENSDARG00000091600' => 'Uncharacterized protein',
'ENSDARG00000092703' => 'chromosome 19 open reading frame 12',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
),
'gene_name_arr' => array(
'ENSG00000105176' => 'URI1',
'ENSG00000198597' => 'ZNF536',
'ENSG00000223148' => 'AC011478.1',
'ENSG00000242100' => 'RPL9P32',
'ENSG00000261316' => 'CTC-400I9.1',
'ENSG00000266910' => 'CTC-448F2.6',
'ENSG00000267006' => 'CTC-448F2.4',
'ENSG00000267081' => 'CTC-400I9.2',
'ENSG00000267223' => 'AC005597.1',
'ENSG00000267258' => 'CTC-448F2.3',
'ENSG00000267433' => 'CTD-2057D4.2',
'ENSG00000267692' => 'TAF9P3',
'ENSG00000267760' => 'CTC-565M22.1',
'ENSG00000278895' => 'CTC-448F2.7',
'ENSG00000280061' => 'CTD-2001J20.1',
'ENSG00000121297' => 'TSHZ3',
'ENSG00000200738' => 'RNA5SP472',
'ENSG00000201894' => 'RNU6-967P',
'ENSG00000221504' => 'AC011456.1',
'ENSG00000252780' => 'RNA5SP471',
'ENSG00000261400' => 'AC011525.2',
'ENSG00000267012' => 'CTC-360P9.1',
'ENSG00000267094' => 'CTC-360P9.5',
'ENSG00000267133' => 'AC011518.2',
'ENSG00000267204' => 'AC011518.1',
'ENSG00000267378' => 'CTC-400I9.3',
'ENSG00000267407' => 'CTD-2050I18.1',
'ENSG00000267465' => 'AC011525.4',
'ENSG00000267489' => 'CTC-360P9.4',
'ENSG00000267599' => 'CTD-2050I18.2',
'ENSG00000267636' => 'AC008992.1',
'ENSG00000267662' => 'AC007796.1',
'ENSG00000267684' => 'CTC-360P9.2',
'ENSG00000267777' => 'CTC-439O9.3',
'ENSG00000267779' => 'LINC01533',
'ENSG00000278875' => 'CTC-439O9.1',
'ENSMUSG00000021217' => 'Tshz3',
'ENSMUSG00000030421' => 'Uri1',
'ENSMUSG00000043456' => 'Zfp536',
'ENSMUSG00000064591' => 'Gm22302',
'ENSMUSG00000066543' => 'Rpl17-ps9',
'ENSMUSG00000089273' => 'Gm24550',
'ENSMUSG00000093216' => 'Gm25247',
'ENSMUSG00000093359' => 'Gm23292',
'ENSMUSG00000093540' => '4930505M18Rik',
'ENSMUSG00000098016' => 'Gm9211',
'ENSMUSG00000099715' => 'RP23-291B1.1',
'ENSMUSG00000100616' => 'RP23-469D18.3',
'ENSMUSG00000100905' => 'RP23-469D18.2',
'ENSMUSG00000101342' => 'RP23-469D18.1',
'ENSMUSG00000101965' => 'RP23-330B16.1',
'ENSDARG00000087394' => '',
'ENSDARG00000003263' => 'pop4',
'ENSDARG00000011133' => 'ccne1',
'ENSDARG00000015959' => 'TSHZ3',
'ENSDARG00000022251' => 'znf536',
'ENSDARG00000027852' => 'plekhf1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S_rRNA',
'ENSDARG00000085596' => 'U3',
'ENSDARG00000088089' => 'BX005073.1',
'ENSDARG00000088500' => 'C7H19orf12 (2 of 3)',
'ENSDARG00000089284' => '5S_rRNA',
'ENSDARG00000091033' => '5S_rRNA',
'ENSDARG00000091600' => 'CR352229.1',
'ENSDARG00000092703' => 'C7H19orf12 (3 of 3)',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 53 => 'Brain',
(int) 97 => 'Breast',
(int) 125 => 'Colon',
(int) 152 => 'Heart',
(int) 188 => 'Kidney',
(int) 219 => 'Liver',
(int) 255 => 'Lung',
(int) 280 => 'Muscle',
(int) 311 => 'Ovary',
(int) 340 => 'Placenta',
(int) 357 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 114,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000360605' => array(
'start' => '29923644',
'end' => '30015695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-003'
),
'ENST00000392271' => array(
'start' => '29942251',
'end' => '30016608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-001'
),
'ENST00000570564' => array(
'start' => '29923657',
'end' => '29986377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-005'
),
'ENST00000570704' => array(
'start' => '29983233',
'end' => '30007579',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-007'
),
'ENST00000573052' => array(
'start' => '30012423',
'end' => '30015026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-010'
),
'ENST00000574110' => array(
'start' => '29942261',
'end' => '30015704',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-002'
),
'ENST00000574176' => array(
'start' => '30004295',
'end' => '30009019',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-008'
),
'ENST00000574233' => array(
'start' => '29923691',
'end' => '30005436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-012'
),
'ENST00000574666' => array(
'start' => '29942311',
'end' => '30005706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-006'
),
'ENST00000574766' => array(
'start' => '29923712',
'end' => '29937997',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-004'
),
'ENST00000575242' => array(
'start' => '30009080',
'end' => '30012899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-009'
),
'ENST00000576442' => array(
'start' => '29971093',
'end' => '30007547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-011'
),
'ENST00000585655' => array(
'start' => '29923734',
'end' => '29925897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-014'
),
'ENST00000355537' => array(
'start' => '30372412',
'end' => '30558059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-004'
),
'ENST00000585628' => array(
'start' => '30228514',
'end' => '30548468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-003'
),
'ENST00000590564' => array(
'start' => '30228290',
'end' => '30300669',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF536-001'
),
'ENST00000591488' => array(
'start' => '30228554',
'end' => '30443978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-002'
),
'ENST00000592773' => array(
'start' => '30549346',
'end' => '30713538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-005'
),
'ENST00000411216' => array(
'start' => '30614220',
'end' => '30614320',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011478.1-201'
),
'ENST00000464118' => array(
'start' => '29956369',
'end' => '29956988',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL9P32-001'
),
'ENST00000567374' => array(
'start' => '30907199',
'end' => '30909155',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.1-001'
),
'ENST00000587506' => array(
'start' => '30037423',
'end' => '30038156',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.6-001'
),
'ENST00000588402' => array(
'start' => '30028741',
'end' => '30029916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-448F2.4-001'
),
'ENST00000585364' => array(
'start' => '30850975',
'end' => '30872507',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.2-001'
),
'ENST00000588092' => array(
'start' => '30219666',
'end' => '30228715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC005597.1-001'
),
'ENST00000585753' => array(
'start' => '29921182',
'end' => '29921653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.3-001'
),
'ENST00000586584' => array(
'start' => '29901696',
'end' => '29901869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2057D4.2-001'
),
'ENST00000585464' => array(
'start' => '30037285',
'end' => '30037411',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TAF9P3-001'
),
'ENST00000593140' => array(
'start' => '30665274',
'end' => '30668647',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-565M22.1-001'
),
'ENST00000624591' => array(
'start' => '29915862',
'end' => '29917830',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-448F2.7-001'
),
'ENST00000623331' => array(
'start' => '30553956',
'end' => '30558058',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2001J20.1-001'
),
'ENST00000240587' => array(
'start' => '31274945',
'end' => '31349547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-001'
),
'ENST00000558569' => array(
'start' => '31308345',
'end' => '31349255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-002'
),
'ENST00000560707' => array(
'start' => '31279194',
'end' => '31305763',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TSHZ3-003'
),
'ENST00000363868' => array(
'start' => '32243965',
'end' => '32244083',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP472-201'
),
'ENST00000365024' => array(
'start' => '31787148',
'end' => '31787255',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-967P-201'
),
'ENST00000408577' => array(
'start' => '31926573',
'end' => '31926688',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011456.1-201'
),
'ENST00000516971' => array(
'start' => '31655356',
'end' => '31655461',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP471-201'
),
'ENST00000562167' => array(
'start' => '31588040',
'end' => '31595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.2-001'
),
'ENST00000592270' => array(
'start' => '31886704',
'end' => '31908284',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.1-001'
),
'ENST00000593211' => array(
'start' => '31922884',
'end' => '31945398',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.5-001'
),
'ENST00000591232' => array(
'start' => '32104980',
'end' => '32106537',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-003'
),
'ENST00000592668' => array(
'start' => '32104537',
'end' => '32105163',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-002'
),
'ENST00000593038' => array(
'start' => '32103583',
'end' => '32104724',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-001'
),
'ENST00000591212' => array(
'start' => '32102088',
'end' => '32105916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.1-001'
),
'ENST00000587702' => array(
'start' => '30946582',
'end' => '30957192',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.3-001'
),
'ENST00000593063' => array(
'start' => '31542039',
'end' => '31554797',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.1-001'
),
'ENST00000590611' => array(
'start' => '31588255',
'end' => '31593781',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-003'
),
'ENST00000592644' => array(
'start' => '31592281',
'end' => '31593039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-001'
),
'ENST00000592788' => array(
'start' => '31588196',
'end' => '31592763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-002'
),
'ENST00000590053' => array(
'start' => '31967099',
'end' => '32025791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-001'
),
'ENST00000593082' => array(
'start' => '32002491',
'end' => '32025777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-002'
),
'ENST00000587779' => array(
'start' => '31465653',
'end' => '31466431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.2-001'
),
'ENST00000591132' => array(
'start' => '31421997',
'end' => '31427302',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC008992.1-001'
),
'ENST00000585336' => array(
'start' => '31348881',
'end' => '31417794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007796.1-001'
),
'ENST00000590021' => array(
'start' => '31965642',
'end' => '31966969',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.2-001'
),
'ENST00000589511' => array(
'start' => '31167516',
'end' => '31207663',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-439O9.3-001'
),
'ENST00000585739' => array(
'start' => '32025982',
'end' => '32048883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-003'
),
'ENST00000588694' => array(
'start' => '32025895',
'end' => '32039857',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-002'
),
'ENST00000589110' => array(
'start' => '32048622',
'end' => '32056865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-005'
),
'ENST00000590719' => array(
'start' => '32040486',
'end' => '32048899',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-004'
),
'ENST00000593056' => array(
'start' => '32025862',
'end' => '32039643',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-001'
),
'ENST00000625085' => array(
'start' => '31364297',
'end' => '31366098',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-439O9.1-001'
),
'ENSMUST00000021641' => array(
'start' => '36698118',
'end' => '36773553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz3-001'
),
'ENSMUST00000176413' => array(
'start' => '36698217',
'end' => '36702113',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tshz3-002'
),
'ENSMUST00000085513' => array(
'start' => '37960002',
'end' => '38019542',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Uri1-001'
),
'ENSMUST00000056338' => array(
'start' => '37479109',
'end' => '37769962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-001'
),
'ENSMUST00000175941' => array(
'start' => '37479104',
'end' => '37769624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-003'
),
'ENSMUST00000176114' => array(
'start' => '37479122',
'end' => '37770980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-004'
),
'ENSMUST00000176129' => array(
'start' => '37472135',
'end' => '37479986',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-002'
),
'ENSMUST00000176137' => array(
'start' => '37710068',
'end' => '37773577',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp536-006'
),
'ENSMUST00000176205' => array(
'start' => '37479177',
'end' => '37772875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-005'
),
'ENSMUST00000176297' => array(
'start' => '37716318',
'end' => '37773562',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp536-007'
),
'ENSMUST00000176534' => array(
'start' => '37569629',
'end' => '37773641',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-008'
),
'ENSMUST00000176680' => array(
'start' => '37569499',
'end' => '37770782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-009'
),
'ENSMUST00000082657' => array(
'start' => '37824242',
'end' => '37824347',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22302-201'
),
'ENSMUST00000119541' => array(
'start' => '36118274',
'end' => '36118828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl17-ps9-001'
),
'ENSMUST00000158648' => array(
'start' => '36751195',
'end' => '36751473',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24550-201'
),
'ENSMUST00000175475' => array(
'start' => '36430611',
'end' => '36430700',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25247-201'
),
'ENSMUST00000175618' => array(
'start' => '36302515',
'end' => '36302615',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23292-201'
),
'ENSMUST00000175854' => array(
'start' => '37669799',
'end' => '37672228',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930505M18Rik-001'
),
'ENSMUST00000182882' => array(
'start' => '36234292',
'end' => '36235266',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9211-001'
),
'ENSMUST00000190250' => array(
'start' => '37299265',
'end' => '37304034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-291B1.1-001'
),
'ENSMUST00000188337' => array(
'start' => '37137011',
'end' => '37140382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.3-001'
),
'ENSMUST00000189179' => array(
'start' => '37140541',
'end' => '37141711',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.2-001'
),
'ENSMUST00000190381' => array(
'start' => '37119993',
'end' => '37128692',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.1-001'
),
'ENSMUST00000191121' => array(
'start' => '36568743',
'end' => '36573095',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-330B16.1-001'
),
'ENSDART00000125979' => array(
'start' => '14317977',
'end' => '14320941',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000142462' => array(
'start' => '14317854',
'end' => '14320748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000011823' => array(
'start' => '47573290',
'end' => '47581164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pop4-001'
),
'ENSDART00000141309' => array(
'start' => '47573342',
'end' => '47573899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pop4-003'
),
'ENSDART00000146388' => array(
'start' => '47573342',
'end' => '47580924',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'pop4-002'
),
'ENSDART00000007883' => array(
'start' => '47629579',
'end' => '47639396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-201'
),
'ENSDART00000133290' => array(
'start' => '47630367',
'end' => '47632769',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ccne1-003'
),
'ENSDART00000133570' => array(
'start' => '47629355',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-001'
),
'ENSDART00000136158' => array(
'start' => '47630031',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-002'
),
'ENSDART00000032123' => array(
'start' => '48338942',
'end' => '48342349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-201'
),
'ENSDART00000034068' => array(
'start' => '47981991',
'end' => '48095585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-001'
),
'ENSDART00000126085' => array(
'start' => '47980945',
'end' => '47984243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-201'
),
'ENSDART00000155115' => array(
'start' => '47981991',
'end' => '48041229',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-202'
),
'ENSDART00000036597' => array(
'start' => '47585060',
'end' => '47586479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'plekhf1-001'
),
'ENSDART00000098928' => array(
'start' => '47619385',
'end' => '47629279',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:162297-001'
),
'ENSDART00000142839' => array(
'start' => '47628251',
'end' => '47629052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zgc:162297-002'
),
'ENSDART00000120963' => array(
'start' => '48575831',
'end' => '48575947',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1244-201'
),
'ENSDART00000120996' => array(
'start' => '47778408',
'end' => '47778506',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.6-201'
),
'ENSDART00000128540' => array(
'start' => '48605326',
'end' => '48606050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BX005073.1-201'
),
'ENSDART00000129669' => array(
'start' => '47598327',
'end' => '47599909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (2 of 3)-201'
),
'ENSDART00000130868' => array(
'start' => '47835767',
'end' => '47835883',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1749-201'
),
'ENSDART00000120651' => array(
'start' => '48517958',
'end' => '48518072',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1897-201'
),
'ENSDART00000128599' => array(
'start' => '47614357',
'end' => '47618762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CR352229.1-201'
),
'ENSDART00000005087' => array(
'start' => '47601571',
'end' => '47603022',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-001'
),
'ENSDART00000124518' => array(
'start' => '47601150',
'end' => '47607717',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-201'
),
'ENSDART00000143669' => array(
'start' => '47602020',
'end' => '47603008',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C7H19orf12 (3 of 3)-002'
),
'ENSDART00000155999' => array(
'start' => '47743408',
'end' => '47843085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-139o14.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
'ENSG00000105176' => array(
[maximum depth reached]
),
'ENSG00000198597' => array(
[maximum depth reached]
),
'ENSG00000242100' => array(
[maximum depth reached]
),
'ENSG00000266910' => array(
[maximum depth reached]
),
'ENSG00000267006' => array(
[maximum depth reached]
),
'ENSG00000267258' => array(
[maximum depth reached]
),
'ENSG00000267692' => array(
[maximum depth reached]
),
'ENSG00000267760' => array(
[maximum depth reached]
),
'ENSG00000278895' => array(
[maximum depth reached]
),
'ENSG00000280061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Kidney',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Colon',
(int) 90 => 'Heart',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Ovary',
(int) 147 => 'Testis'
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
'ENSG00000121297' => array(
[maximum depth reached]
),
'ENSG00000221504' => array(
[maximum depth reached]
),
'ENSG00000261400' => array(
[maximum depth reached]
),
'ENSG00000267012' => array(
[maximum depth reached]
),
'ENSG00000267094' => array(
[maximum depth reached]
),
'ENSG00000267204' => array(
[maximum depth reached]
),
'ENSG00000267407' => array(
[maximum depth reached]
),
'ENSG00000267465' => array(
[maximum depth reached]
),
'ENSG00000267489' => array(
[maximum depth reached]
),
'ENSG00000267599' => array(
[maximum depth reached]
),
'ENSG00000267636' => array(
[maximum depth reached]
),
'ENSG00000267662' => array(
[maximum depth reached]
),
'ENSG00000267684' => array(
[maximum depth reached]
),
'ENSG00000267777' => array(
[maximum depth reached]
),
'ENSG00000278875' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Muscle',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Testis',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Brain',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Testis',
(int) 46 => 'Adrenal',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Colon',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Ovary',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis'
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000021217' => array(
[maximum depth reached]
),
'ENSMUSG00000030421' => array(
[maximum depth reached]
),
'ENSMUSG00000043456' => array(
[maximum depth reached]
),
'ENSMUSG00000066543' => array(
[maximum depth reached]
),
'ENSMUSG00000089273' => array(
[maximum depth reached]
),
'ENSMUSG00000093359' => array(
[maximum depth reached]
),
'ENSMUSG00000093540' => array(
[maximum depth reached]
),
'ENSMUSG00000098016' => array(
[maximum depth reached]
),
'ENSMUSG00000099715' => array(
[maximum depth reached]
),
'ENSMUSG00000100616' => array(
[maximum depth reached]
),
'ENSMUSG00000100905' => array(
[maximum depth reached]
),
'ENSMUSG00000101342' => array(
[maximum depth reached]
),
'ENSMUSG00000101965' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Lung',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Testis',
(int) 69 => 'Breast',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Brain',
(int) 87 => 'Colon',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Brain',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Bladder',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Bladder',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Placenta',
(int) 110 => 'Liver',
(int) 111 => 'Testis',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Breast',
(int) 116 => 'Liver',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Lung',
(int) 121 => 'Ovary'
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
'ENSDARG00000087394' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle'
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
'ENSDARG00000003263' => array(
[maximum depth reached]
),
'ENSDARG00000011133' => array(
[maximum depth reached]
),
'ENSDARG00000015959' => array(
[maximum depth reached]
),
'ENSDARG00000022251' => array(
[maximum depth reached]
),
'ENSDARG00000027852' => array(
[maximum depth reached]
),
'ENSDARG00000068410' => array(
[maximum depth reached]
),
'ENSDARG00000088089' => array(
[maximum depth reached]
),
'ENSDARG00000088500' => array(
[maximum depth reached]
),
'ENSDARG00000091600' => array(
[maximum depth reached]
),
'ENSDARG00000092703' => array(
[maximum depth reached]
),
'ENSDARG00000097109' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Liver',
(int) 15 => 'Heart',
(int) 16 => 'Liver',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Liver',
(int) 21 => 'Brain',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Muscle',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Kidney',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Brain',
(int) 34 => 'Heart',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Brain',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000105176' => 'URI1, prefoldin-like chaperone',
'ENSG00000198597' => 'zinc finger protein 536',
'ENSG00000223148' => null,
'ENSG00000242100' => 'ribosomal protein L9 pseudogene 32',
'ENSG00000261316' => null,
'ENSG00000266910' => null,
'ENSG00000267006' => null,
'ENSG00000267081' => null,
'ENSG00000267223' => null,
'ENSG00000267258' => null,
'ENSG00000267433' => null,
'ENSG00000267692' => 'TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3',
'ENSG00000267760' => null,
'ENSG00000278895' => null,
'ENSG00000280061' => null,
'ENSG00000121297' => 'teashirt zinc finger homeobox 3',
'ENSG00000200738' => 'RNA, 5S ribosomal pseudogene 472',
'ENSG00000201894' => 'RNA, U6 small nuclear 967, pseudogene',
'ENSG00000221504' => null,
'ENSG00000252780' => 'RNA, 5S ribosomal pseudogene 471',
'ENSG00000261400' => null,
'ENSG00000267012' => null,
'ENSG00000267094' => null,
'ENSG00000267133' => null,
'ENSG00000267204' => null,
'ENSG00000267378' => null,
'ENSG00000267407' => null,
'ENSG00000267465' => null,
'ENSG00000267489' => null,
'ENSG00000267599' => null,
'ENSG00000267636' => null,
'ENSG00000267662' => null,
'ENSG00000267684' => null,
'ENSG00000267777' => null,
'ENSG00000267779' => 'long intergenic non-protein coding RNA 1533',
'ENSG00000278875' => null,
'ENSMUSG00000021217' => 'teashirt zinc finger family member 3',
'ENSMUSG00000030421' => 'URI1, prefoldin-like chaperone',
'ENSMUSG00000043456' => 'zinc finger protein 536',
'ENSMUSG00000064591' => 'predicted gene, 22302',
'ENSMUSG00000066543' => 'ribosomal protein L17, pseudogene 9',
'ENSMUSG00000089273' => 'predicted gene, 24550',
'ENSMUSG00000093216' => 'predicted gene, 25247',
'ENSMUSG00000093359' => 'predicted gene, 23292',
'ENSMUSG00000093540' => 'RIKEN cDNA 4930505M18 gene',
'ENSMUSG00000098016' => 'predicted gene 9211',
'ENSMUSG00000099715' => 'predicted gene 28077',
'ENSMUSG00000100616' => 'predicted gene 28076',
'ENSMUSG00000100905' => 'predicted gene 28075',
'ENSMUSG00000101342' => 'predicted gene 28078',
'ENSMUSG00000101965' => 'predicted gene 29129',
'ENSDARG00000087394' => null,
'ENSDARG00000003263' => 'processing of precursor 4, ribonuclease P/MRP subunit',
'ENSDARG00000011133' => 'cyclin E1',
'ENSDARG00000015959' => 'teashirt zinc finger homeobox 3',
'ENSDARG00000022251' => 'zinc finger protein 536',
'ENSDARG00000027852' => 'pleckstrin homology domain containing, family F (with FYVE domain) member 1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S ribosomal RNA',
'ENSDARG00000085596' => 'Small nucleolar RNA U3',
'ENSDARG00000088089' => 'Uncharacterized protein',
'ENSDARG00000088500' => 'chromosome 19 open reading frame 12',
'ENSDARG00000089284' => '5S ribosomal RNA',
'ENSDARG00000091033' => '5S ribosomal RNA',
'ENSDARG00000091600' => 'Uncharacterized protein',
'ENSDARG00000092703' => 'chromosome 19 open reading frame 12',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
)
$gene_name_arr = array(
'ENSG00000105176' => 'URI1',
'ENSG00000198597' => 'ZNF536',
'ENSG00000223148' => 'AC011478.1',
'ENSG00000242100' => 'RPL9P32',
'ENSG00000261316' => 'CTC-400I9.1',
'ENSG00000266910' => 'CTC-448F2.6',
'ENSG00000267006' => 'CTC-448F2.4',
'ENSG00000267081' => 'CTC-400I9.2',
'ENSG00000267223' => 'AC005597.1',
'ENSG00000267258' => 'CTC-448F2.3',
'ENSG00000267433' => 'CTD-2057D4.2',
'ENSG00000267692' => 'TAF9P3',
'ENSG00000267760' => 'CTC-565M22.1',
'ENSG00000278895' => 'CTC-448F2.7',
'ENSG00000280061' => 'CTD-2001J20.1',
'ENSG00000121297' => 'TSHZ3',
'ENSG00000200738' => 'RNA5SP472',
'ENSG00000201894' => 'RNU6-967P',
'ENSG00000221504' => 'AC011456.1',
'ENSG00000252780' => 'RNA5SP471',
'ENSG00000261400' => 'AC011525.2',
'ENSG00000267012' => 'CTC-360P9.1',
'ENSG00000267094' => 'CTC-360P9.5',
'ENSG00000267133' => 'AC011518.2',
'ENSG00000267204' => 'AC011518.1',
'ENSG00000267378' => 'CTC-400I9.3',
'ENSG00000267407' => 'CTD-2050I18.1',
'ENSG00000267465' => 'AC011525.4',
'ENSG00000267489' => 'CTC-360P9.4',
'ENSG00000267599' => 'CTD-2050I18.2',
'ENSG00000267636' => 'AC008992.1',
'ENSG00000267662' => 'AC007796.1',
'ENSG00000267684' => 'CTC-360P9.2',
'ENSG00000267777' => 'CTC-439O9.3',
'ENSG00000267779' => 'LINC01533',
'ENSG00000278875' => 'CTC-439O9.1',
'ENSMUSG00000021217' => 'Tshz3',
'ENSMUSG00000030421' => 'Uri1',
'ENSMUSG00000043456' => 'Zfp536',
'ENSMUSG00000064591' => 'Gm22302',
'ENSMUSG00000066543' => 'Rpl17-ps9',
'ENSMUSG00000089273' => 'Gm24550',
'ENSMUSG00000093216' => 'Gm25247',
'ENSMUSG00000093359' => 'Gm23292',
'ENSMUSG00000093540' => '4930505M18Rik',
'ENSMUSG00000098016' => 'Gm9211',
'ENSMUSG00000099715' => 'RP23-291B1.1',
'ENSMUSG00000100616' => 'RP23-469D18.3',
'ENSMUSG00000100905' => 'RP23-469D18.2',
'ENSMUSG00000101342' => 'RP23-469D18.1',
'ENSMUSG00000101965' => 'RP23-330B16.1',
'ENSDARG00000087394' => '',
'ENSDARG00000003263' => 'pop4',
'ENSDARG00000011133' => 'ccne1',
'ENSDARG00000015959' => 'TSHZ3',
'ENSDARG00000022251' => 'znf536',
'ENSDARG00000027852' => 'plekhf1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S_rRNA',
'ENSDARG00000085596' => 'U3',
'ENSDARG00000088089' => 'BX005073.1',
'ENSDARG00000088500' => 'C7H19orf12 (2 of 3)',
'ENSDARG00000089284' => '5S_rRNA',
'ENSDARG00000091033' => '5S_rRNA',
'ENSDARG00000091600' => 'CR352229.1',
'ENSDARG00000092703' => 'C7H19orf12 (3 of 3)',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '29888853',
'seq_end' => '30910612',
'region_length' => '1021759',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0002',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30910612',
'seq_end' => '30929220',
'region_length' => '18608',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0003',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30929221',
'seq_end' => '30930447',
'region_length' => '1226',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0004',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30930448',
'seq_end' => '32267062',
'region_length' => '1336614',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0005',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '35865981',
'seq_end' => '38051259',
'region_length' => '2185278',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0006',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '14316632',
'seq_end' => '14326961',
'region_length' => '10329',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0007',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '47420318',
'seq_end' => '48690356',
'region_length' => '1270038',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 53 => 'Brain',
(int) 97 => 'Breast',
(int) 125 => 'Colon',
(int) 152 => 'Heart',
(int) 188 => 'Kidney',
(int) 219 => 'Liver',
(int) 255 => 'Lung',
(int) 280 => 'Muscle',
(int) 311 => 'Ovary',
(int) 340 => 'Placenta',
(int) 357 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 114
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000360605' => array(
'start' => '29923644',
'end' => '30015695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-003'
),
'ENST00000392271' => array(
'start' => '29942251',
'end' => '30016608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-001'
),
'ENST00000570564' => array(
'start' => '29923657',
'end' => '29986377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-005'
),
'ENST00000570704' => array(
'start' => '29983233',
'end' => '30007579',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-007'
),
'ENST00000573052' => array(
'start' => '30012423',
'end' => '30015026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-010'
),
'ENST00000574110' => array(
'start' => '29942261',
'end' => '30015704',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-002'
),
'ENST00000574176' => array(
'start' => '30004295',
'end' => '30009019',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-008'
),
'ENST00000574233' => array(
'start' => '29923691',
'end' => '30005436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-012'
),
'ENST00000574666' => array(
'start' => '29942311',
'end' => '30005706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-006'
),
'ENST00000574766' => array(
'start' => '29923712',
'end' => '29937997',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-004'
),
'ENST00000575242' => array(
'start' => '30009080',
'end' => '30012899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-009'
),
'ENST00000576442' => array(
'start' => '29971093',
'end' => '30007547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-011'
),
'ENST00000585655' => array(
'start' => '29923734',
'end' => '29925897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-014'
),
'ENST00000355537' => array(
'start' => '30372412',
'end' => '30558059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-004'
),
'ENST00000585628' => array(
'start' => '30228514',
'end' => '30548468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-003'
),
'ENST00000590564' => array(
'start' => '30228290',
'end' => '30300669',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF536-001'
),
'ENST00000591488' => array(
'start' => '30228554',
'end' => '30443978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-002'
),
'ENST00000592773' => array(
'start' => '30549346',
'end' => '30713538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-005'
),
'ENST00000411216' => array(
'start' => '30614220',
'end' => '30614320',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011478.1-201'
),
'ENST00000464118' => array(
'start' => '29956369',
'end' => '29956988',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL9P32-001'
),
'ENST00000567374' => array(
'start' => '30907199',
'end' => '30909155',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.1-001'
),
'ENST00000587506' => array(
'start' => '30037423',
'end' => '30038156',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.6-001'
),
'ENST00000588402' => array(
'start' => '30028741',
'end' => '30029916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-448F2.4-001'
),
'ENST00000585364' => array(
'start' => '30850975',
'end' => '30872507',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.2-001'
),
'ENST00000588092' => array(
'start' => '30219666',
'end' => '30228715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC005597.1-001'
),
'ENST00000585753' => array(
'start' => '29921182',
'end' => '29921653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.3-001'
),
'ENST00000586584' => array(
'start' => '29901696',
'end' => '29901869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2057D4.2-001'
),
'ENST00000585464' => array(
'start' => '30037285',
'end' => '30037411',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TAF9P3-001'
),
'ENST00000593140' => array(
'start' => '30665274',
'end' => '30668647',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-565M22.1-001'
),
'ENST00000624591' => array(
'start' => '29915862',
'end' => '29917830',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-448F2.7-001'
),
'ENST00000623331' => array(
'start' => '30553956',
'end' => '30558058',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2001J20.1-001'
),
'ENST00000240587' => array(
'start' => '31274945',
'end' => '31349547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-001'
),
'ENST00000558569' => array(
'start' => '31308345',
'end' => '31349255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-002'
),
'ENST00000560707' => array(
'start' => '31279194',
'end' => '31305763',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TSHZ3-003'
),
'ENST00000363868' => array(
'start' => '32243965',
'end' => '32244083',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP472-201'
),
'ENST00000365024' => array(
'start' => '31787148',
'end' => '31787255',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-967P-201'
),
'ENST00000408577' => array(
'start' => '31926573',
'end' => '31926688',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011456.1-201'
),
'ENST00000516971' => array(
'start' => '31655356',
'end' => '31655461',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP471-201'
),
'ENST00000562167' => array(
'start' => '31588040',
'end' => '31595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.2-001'
),
'ENST00000592270' => array(
'start' => '31886704',
'end' => '31908284',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.1-001'
),
'ENST00000593211' => array(
'start' => '31922884',
'end' => '31945398',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.5-001'
),
'ENST00000591232' => array(
'start' => '32104980',
'end' => '32106537',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-003'
),
'ENST00000592668' => array(
'start' => '32104537',
'end' => '32105163',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-002'
),
'ENST00000593038' => array(
'start' => '32103583',
'end' => '32104724',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-001'
),
'ENST00000591212' => array(
'start' => '32102088',
'end' => '32105916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.1-001'
),
'ENST00000587702' => array(
'start' => '30946582',
'end' => '30957192',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.3-001'
),
'ENST00000593063' => array(
'start' => '31542039',
'end' => '31554797',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.1-001'
),
'ENST00000590611' => array(
'start' => '31588255',
'end' => '31593781',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-003'
),
'ENST00000592644' => array(
'start' => '31592281',
'end' => '31593039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-001'
),
'ENST00000592788' => array(
'start' => '31588196',
'end' => '31592763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-002'
),
'ENST00000590053' => array(
'start' => '31967099',
'end' => '32025791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-001'
),
'ENST00000593082' => array(
'start' => '32002491',
'end' => '32025777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-002'
),
'ENST00000587779' => array(
'start' => '31465653',
'end' => '31466431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.2-001'
),
'ENST00000591132' => array(
'start' => '31421997',
'end' => '31427302',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC008992.1-001'
),
'ENST00000585336' => array(
'start' => '31348881',
'end' => '31417794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007796.1-001'
),
'ENST00000590021' => array(
'start' => '31965642',
'end' => '31966969',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.2-001'
),
'ENST00000589511' => array(
'start' => '31167516',
'end' => '31207663',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-439O9.3-001'
),
'ENST00000585739' => array(
'start' => '32025982',
'end' => '32048883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-003'
),
'ENST00000588694' => array(
'start' => '32025895',
'end' => '32039857',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-002'
),
'ENST00000589110' => array(
'start' => '32048622',
'end' => '32056865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-005'
),
'ENST00000590719' => array(
'start' => '32040486',
'end' => '32048899',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-004'
),
'ENST00000593056' => array(
'start' => '32025862',
'end' => '32039643',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-001'
),
'ENST00000625085' => array(
'start' => '31364297',
'end' => '31366098',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-439O9.1-001'
),
'ENSMUST00000021641' => array(
'start' => '36698118',
'end' => '36773553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz3-001'
),
'ENSMUST00000176413' => array(
'start' => '36698217',
'end' => '36702113',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tshz3-002'
),
'ENSMUST00000085513' => array(
'start' => '37960002',
'end' => '38019542',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Uri1-001'
),
'ENSMUST00000056338' => array(
'start' => '37479109',
'end' => '37769962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-001'
),
'ENSMUST00000175941' => array(
'start' => '37479104',
'end' => '37769624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-003'
),
'ENSMUST00000176114' => array(
'start' => '37479122',
'end' => '37770980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-004'
),
'ENSMUST00000176129' => array(
'start' => '37472135',
'end' => '37479986',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-002'
),
'ENSMUST00000176137' => array(
'start' => '37710068',
'end' => '37773577',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp536-006'
),
'ENSMUST00000176205' => array(
'start' => '37479177',
'end' => '37772875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-005'
),
'ENSMUST00000176297' => array(
'start' => '37716318',
'end' => '37773562',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp536-007'
),
'ENSMUST00000176534' => array(
'start' => '37569629',
'end' => '37773641',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-008'
),
'ENSMUST00000176680' => array(
'start' => '37569499',
'end' => '37770782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-009'
),
'ENSMUST00000082657' => array(
'start' => '37824242',
'end' => '37824347',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22302-201'
),
'ENSMUST00000119541' => array(
'start' => '36118274',
'end' => '36118828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl17-ps9-001'
),
'ENSMUST00000158648' => array(
'start' => '36751195',
'end' => '36751473',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24550-201'
),
'ENSMUST00000175475' => array(
'start' => '36430611',
'end' => '36430700',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25247-201'
),
'ENSMUST00000175618' => array(
'start' => '36302515',
'end' => '36302615',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23292-201'
),
'ENSMUST00000175854' => array(
'start' => '37669799',
'end' => '37672228',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930505M18Rik-001'
),
'ENSMUST00000182882' => array(
'start' => '36234292',
'end' => '36235266',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9211-001'
),
'ENSMUST00000190250' => array(
'start' => '37299265',
'end' => '37304034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-291B1.1-001'
),
'ENSMUST00000188337' => array(
'start' => '37137011',
'end' => '37140382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.3-001'
),
'ENSMUST00000189179' => array(
'start' => '37140541',
'end' => '37141711',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.2-001'
),
'ENSMUST00000190381' => array(
'start' => '37119993',
'end' => '37128692',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.1-001'
),
'ENSMUST00000191121' => array(
'start' => '36568743',
'end' => '36573095',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-330B16.1-001'
),
'ENSDART00000125979' => array(
'start' => '14317977',
'end' => '14320941',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000142462' => array(
'start' => '14317854',
'end' => '14320748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000011823' => array(
'start' => '47573290',
'end' => '47581164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pop4-001'
),
'ENSDART00000141309' => array(
'start' => '47573342',
'end' => '47573899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pop4-003'
),
'ENSDART00000146388' => array(
'start' => '47573342',
'end' => '47580924',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'pop4-002'
),
'ENSDART00000007883' => array(
'start' => '47629579',
'end' => '47639396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-201'
),
'ENSDART00000133290' => array(
'start' => '47630367',
'end' => '47632769',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ccne1-003'
),
'ENSDART00000133570' => array(
'start' => '47629355',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-001'
),
'ENSDART00000136158' => array(
'start' => '47630031',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-002'
),
'ENSDART00000032123' => array(
'start' => '48338942',
'end' => '48342349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-201'
),
'ENSDART00000034068' => array(
'start' => '47981991',
'end' => '48095585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-001'
),
'ENSDART00000126085' => array(
'start' => '47980945',
'end' => '47984243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-201'
),
'ENSDART00000155115' => array(
'start' => '47981991',
'end' => '48041229',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-202'
),
'ENSDART00000036597' => array(
'start' => '47585060',
'end' => '47586479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'plekhf1-001'
),
'ENSDART00000098928' => array(
'start' => '47619385',
'end' => '47629279',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:162297-001'
),
'ENSDART00000142839' => array(
'start' => '47628251',
'end' => '47629052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zgc:162297-002'
),
'ENSDART00000120963' => array(
'start' => '48575831',
'end' => '48575947',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1244-201'
),
'ENSDART00000120996' => array(
'start' => '47778408',
'end' => '47778506',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.6-201'
),
'ENSDART00000128540' => array(
'start' => '48605326',
'end' => '48606050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BX005073.1-201'
),
'ENSDART00000129669' => array(
'start' => '47598327',
'end' => '47599909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (2 of 3)-201'
),
'ENSDART00000130868' => array(
'start' => '47835767',
'end' => '47835883',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1749-201'
),
'ENSDART00000120651' => array(
'start' => '48517958',
'end' => '48518072',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1897-201'
),
'ENSDART00000128599' => array(
'start' => '47614357',
'end' => '47618762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CR352229.1-201'
),
'ENSDART00000005087' => array(
'start' => '47601571',
'end' => '47603022',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-001'
),
'ENSDART00000124518' => array(
'start' => '47601150',
'end' => '47607717',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-201'
),
'ENSDART00000143669' => array(
'start' => '47602020',
'end' => '47603008',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C7H19orf12 (3 of 3)-002'
),
'ENSDART00000155999' => array(
'start' => '47743408',
'end' => '47843085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-139o14.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
'ENSG00000105176' => array(
[maximum depth reached]
),
'ENSG00000198597' => array(
[maximum depth reached]
),
'ENSG00000242100' => array(
[maximum depth reached]
),
'ENSG00000266910' => array(
[maximum depth reached]
),
'ENSG00000267006' => array(
[maximum depth reached]
),
'ENSG00000267258' => array(
[maximum depth reached]
),
'ENSG00000267692' => array(
[maximum depth reached]
),
'ENSG00000267760' => array(
[maximum depth reached]
),
'ENSG00000278895' => array(
[maximum depth reached]
),
'ENSG00000280061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Kidney',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Colon',
(int) 90 => 'Heart',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Ovary',
(int) 147 => 'Testis'
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
'ENSG00000121297' => array(
[maximum depth reached]
),
'ENSG00000221504' => array(
[maximum depth reached]
),
'ENSG00000261400' => array(
[maximum depth reached]
),
'ENSG00000267012' => array(
[maximum depth reached]
),
'ENSG00000267094' => array(
[maximum depth reached]
),
'ENSG00000267204' => array(
[maximum depth reached]
),
'ENSG00000267407' => array(
[maximum depth reached]
),
'ENSG00000267465' => array(
[maximum depth reached]
),
'ENSG00000267489' => array(
[maximum depth reached]
),
'ENSG00000267599' => array(
[maximum depth reached]
),
'ENSG00000267636' => array(
[maximum depth reached]
),
'ENSG00000267662' => array(
[maximum depth reached]
),
'ENSG00000267684' => array(
[maximum depth reached]
),
'ENSG00000267777' => array(
[maximum depth reached]
),
'ENSG00000278875' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Muscle',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Testis',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Brain',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Testis',
(int) 46 => 'Adrenal',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Colon',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Ovary',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis'
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000021217' => array(
[maximum depth reached]
),
'ENSMUSG00000030421' => array(
[maximum depth reached]
),
'ENSMUSG00000043456' => array(
[maximum depth reached]
),
'ENSMUSG00000066543' => array(
[maximum depth reached]
),
'ENSMUSG00000089273' => array(
[maximum depth reached]
),
'ENSMUSG00000093359' => array(
[maximum depth reached]
),
'ENSMUSG00000093540' => array(
[maximum depth reached]
),
'ENSMUSG00000098016' => array(
[maximum depth reached]
),
'ENSMUSG00000099715' => array(
[maximum depth reached]
),
'ENSMUSG00000100616' => array(
[maximum depth reached]
),
'ENSMUSG00000100905' => array(
[maximum depth reached]
),
'ENSMUSG00000101342' => array(
[maximum depth reached]
),
'ENSMUSG00000101965' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Lung',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Testis',
(int) 69 => 'Breast',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Brain',
(int) 87 => 'Colon',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Brain',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Bladder',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Bladder',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Placenta',
(int) 110 => 'Liver',
(int) 111 => 'Testis',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Breast',
(int) 116 => 'Liver',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Lung',
(int) 121 => 'Ovary'
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
'ENSDARG00000087394' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle'
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
'ENSDARG00000003263' => array(
[maximum depth reached]
),
'ENSDARG00000011133' => array(
[maximum depth reached]
),
'ENSDARG00000015959' => array(
[maximum depth reached]
),
'ENSDARG00000022251' => array(
[maximum depth reached]
),
'ENSDARG00000027852' => array(
[maximum depth reached]
),
'ENSDARG00000068410' => array(
[maximum depth reached]
),
'ENSDARG00000088089' => array(
[maximum depth reached]
),
'ENSDARG00000088500' => array(
[maximum depth reached]
),
'ENSDARG00000091600' => array(
[maximum depth reached]
),
'ENSDARG00000092703' => array(
[maximum depth reached]
),
'ENSDARG00000097109' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Liver',
(int) 15 => 'Heart',
(int) 16 => 'Liver',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Liver',
(int) 21 => 'Brain',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Muscle',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Kidney',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Brain',
(int) 34 => 'Heart',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Brain',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0002',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30910612',
'seq_end' => '30929220',
'region_length' => '18608',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
)
$gene_el = array(
'ENST00000623331' => array(
'Adipose' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.336',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '1.873',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.22'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.148',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.09'
),
'Lung' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.341',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000280061'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.336',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '1.873',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.22'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.148',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.09'
),
'Lung' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.341',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000623331'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000105176' => 'URI1, prefoldin-like chaperone',
'ENSG00000198597' => 'zinc finger protein 536',
'ENSG00000223148' => null,
'ENSG00000242100' => 'ribosomal protein L9 pseudogene 32',
'ENSG00000261316' => null,
'ENSG00000266910' => null,
'ENSG00000267006' => null,
'ENSG00000267081' => null,
'ENSG00000267223' => null,
'ENSG00000267258' => null,
'ENSG00000267433' => null,
'ENSG00000267692' => 'TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3',
'ENSG00000267760' => null,
'ENSG00000278895' => null,
'ENSG00000280061' => null,
'ENSG00000121297' => 'teashirt zinc finger homeobox 3',
'ENSG00000200738' => 'RNA, 5S ribosomal pseudogene 472',
'ENSG00000201894' => 'RNA, U6 small nuclear 967, pseudogene',
'ENSG00000221504' => null,
'ENSG00000252780' => 'RNA, 5S ribosomal pseudogene 471',
'ENSG00000261400' => null,
'ENSG00000267012' => null,
'ENSG00000267094' => null,
'ENSG00000267133' => null,
'ENSG00000267204' => null,
'ENSG00000267378' => null,
'ENSG00000267407' => null,
'ENSG00000267465' => null,
'ENSG00000267489' => null,
'ENSG00000267599' => null,
'ENSG00000267636' => null,
'ENSG00000267662' => null,
'ENSG00000267684' => null,
'ENSG00000267777' => null,
'ENSG00000267779' => 'long intergenic non-protein coding RNA 1533',
'ENSG00000278875' => null,
'ENSMUSG00000021217' => 'teashirt zinc finger family member 3',
'ENSMUSG00000030421' => 'URI1, prefoldin-like chaperone',
'ENSMUSG00000043456' => 'zinc finger protein 536',
'ENSMUSG00000064591' => 'predicted gene, 22302',
'ENSMUSG00000066543' => 'ribosomal protein L17, pseudogene 9',
'ENSMUSG00000089273' => 'predicted gene, 24550',
'ENSMUSG00000093216' => 'predicted gene, 25247',
'ENSMUSG00000093359' => 'predicted gene, 23292',
'ENSMUSG00000093540' => 'RIKEN cDNA 4930505M18 gene',
'ENSMUSG00000098016' => 'predicted gene 9211',
'ENSMUSG00000099715' => 'predicted gene 28077',
'ENSMUSG00000100616' => 'predicted gene 28076',
'ENSMUSG00000100905' => 'predicted gene 28075',
'ENSMUSG00000101342' => 'predicted gene 28078',
'ENSMUSG00000101965' => 'predicted gene 29129',
'ENSDARG00000087394' => null,
'ENSDARG00000003263' => 'processing of precursor 4, ribonuclease P/MRP subunit',
'ENSDARG00000011133' => 'cyclin E1',
'ENSDARG00000015959' => 'teashirt zinc finger homeobox 3',
'ENSDARG00000022251' => 'zinc finger protein 536',
'ENSDARG00000027852' => 'pleckstrin homology domain containing, family F (with FYVE domain) member 1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S ribosomal RNA',
'ENSDARG00000085596' => 'Small nucleolar RNA U3',
'ENSDARG00000088089' => 'Uncharacterized protein',
'ENSDARG00000088500' => 'chromosome 19 open reading frame 12',
'ENSDARG00000089284' => '5S ribosomal RNA',
'ENSDARG00000091033' => '5S ribosomal RNA',
'ENSDARG00000091600' => 'Uncharacterized protein',
'ENSDARG00000092703' => 'chromosome 19 open reading frame 12',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
),
'gene_name_arr' => array(
'ENSG00000105176' => 'URI1',
'ENSG00000198597' => 'ZNF536',
'ENSG00000223148' => 'AC011478.1',
'ENSG00000242100' => 'RPL9P32',
'ENSG00000261316' => 'CTC-400I9.1',
'ENSG00000266910' => 'CTC-448F2.6',
'ENSG00000267006' => 'CTC-448F2.4',
'ENSG00000267081' => 'CTC-400I9.2',
'ENSG00000267223' => 'AC005597.1',
'ENSG00000267258' => 'CTC-448F2.3',
'ENSG00000267433' => 'CTD-2057D4.2',
'ENSG00000267692' => 'TAF9P3',
'ENSG00000267760' => 'CTC-565M22.1',
'ENSG00000278895' => 'CTC-448F2.7',
'ENSG00000280061' => 'CTD-2001J20.1',
'ENSG00000121297' => 'TSHZ3',
'ENSG00000200738' => 'RNA5SP472',
'ENSG00000201894' => 'RNU6-967P',
'ENSG00000221504' => 'AC011456.1',
'ENSG00000252780' => 'RNA5SP471',
'ENSG00000261400' => 'AC011525.2',
'ENSG00000267012' => 'CTC-360P9.1',
'ENSG00000267094' => 'CTC-360P9.5',
'ENSG00000267133' => 'AC011518.2',
'ENSG00000267204' => 'AC011518.1',
'ENSG00000267378' => 'CTC-400I9.3',
'ENSG00000267407' => 'CTD-2050I18.1',
'ENSG00000267465' => 'AC011525.4',
'ENSG00000267489' => 'CTC-360P9.4',
'ENSG00000267599' => 'CTD-2050I18.2',
'ENSG00000267636' => 'AC008992.1',
'ENSG00000267662' => 'AC007796.1',
'ENSG00000267684' => 'CTC-360P9.2',
'ENSG00000267777' => 'CTC-439O9.3',
'ENSG00000267779' => 'LINC01533',
'ENSG00000278875' => 'CTC-439O9.1',
'ENSMUSG00000021217' => 'Tshz3',
'ENSMUSG00000030421' => 'Uri1',
'ENSMUSG00000043456' => 'Zfp536',
'ENSMUSG00000064591' => 'Gm22302',
'ENSMUSG00000066543' => 'Rpl17-ps9',
'ENSMUSG00000089273' => 'Gm24550',
'ENSMUSG00000093216' => 'Gm25247',
'ENSMUSG00000093359' => 'Gm23292',
'ENSMUSG00000093540' => '4930505M18Rik',
'ENSMUSG00000098016' => 'Gm9211',
'ENSMUSG00000099715' => 'RP23-291B1.1',
'ENSMUSG00000100616' => 'RP23-469D18.3',
'ENSMUSG00000100905' => 'RP23-469D18.2',
'ENSMUSG00000101342' => 'RP23-469D18.1',
'ENSMUSG00000101965' => 'RP23-330B16.1',
'ENSDARG00000087394' => '',
'ENSDARG00000003263' => 'pop4',
'ENSDARG00000011133' => 'ccne1',
'ENSDARG00000015959' => 'TSHZ3',
'ENSDARG00000022251' => 'znf536',
'ENSDARG00000027852' => 'plekhf1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S_rRNA',
'ENSDARG00000085596' => 'U3',
'ENSDARG00000088089' => 'BX005073.1',
'ENSDARG00000088500' => 'C7H19orf12 (2 of 3)',
'ENSDARG00000089284' => '5S_rRNA',
'ENSDARG00000091033' => '5S_rRNA',
'ENSDARG00000091600' => 'CR352229.1',
'ENSDARG00000092703' => 'C7H19orf12 (3 of 3)',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 53 => 'Brain',
(int) 97 => 'Breast',
(int) 125 => 'Colon',
(int) 152 => 'Heart',
(int) 188 => 'Kidney',
(int) 219 => 'Liver',
(int) 255 => 'Lung',
(int) 280 => 'Muscle',
(int) 311 => 'Ovary',
(int) 340 => 'Placenta',
(int) 357 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 114,
'longest_tissue_len' => (int) 8,
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'transcript_biotype' => 'protein_coding',
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),
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'end' => '30016608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-001'
),
'ENST00000570564' => array(
'start' => '29923657',
'end' => '29986377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-005'
),
'ENST00000570704' => array(
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'end' => '30007579',
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'transcript_name' => 'URI1-007'
),
'ENST00000573052' => array(
'start' => '30012423',
'end' => '30015026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-010'
),
'ENST00000574110' => array(
'start' => '29942261',
'end' => '30015704',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-002'
),
'ENST00000574176' => array(
'start' => '30004295',
'end' => '30009019',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-008'
),
'ENST00000574233' => array(
'start' => '29923691',
'end' => '30005436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-012'
),
'ENST00000574666' => array(
'start' => '29942311',
'end' => '30005706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-006'
),
'ENST00000574766' => array(
'start' => '29923712',
'end' => '29937997',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-004'
),
'ENST00000575242' => array(
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'end' => '30012899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-009'
),
'ENST00000576442' => array(
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'end' => '30007547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-011'
),
'ENST00000585655' => array(
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'end' => '29925897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-014'
),
'ENST00000355537' => array(
'start' => '30372412',
'end' => '30558059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-004'
),
'ENST00000585628' => array(
'start' => '30228514',
'end' => '30548468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-003'
),
'ENST00000590564' => array(
'start' => '30228290',
'end' => '30300669',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF536-001'
),
'ENST00000591488' => array(
'start' => '30228554',
'end' => '30443978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-002'
),
'ENST00000592773' => array(
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'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-005'
),
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'end' => '30614320',
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),
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),
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'transcript_name' => 'CTC-400I9.1-001'
),
'ENST00000587506' => array(
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'end' => '30038156',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.6-001'
),
'ENST00000588402' => array(
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'end' => '30029916',
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'transcript_name' => 'CTC-448F2.4-001'
),
'ENST00000585364' => array(
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'end' => '30872507',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.2-001'
),
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'transcript_name' => 'AC005597.1-001'
),
'ENST00000585753' => array(
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'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.3-001'
),
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'end' => '29901869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2057D4.2-001'
),
'ENST00000585464' => array(
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'end' => '30037411',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TAF9P3-001'
),
'ENST00000593140' => array(
'start' => '30665274',
'end' => '30668647',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-565M22.1-001'
),
'ENST00000624591' => array(
'start' => '29915862',
'end' => '29917830',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-448F2.7-001'
),
'ENST00000623331' => array(
'start' => '30553956',
'end' => '30558058',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2001J20.1-001'
),
'ENST00000240587' => array(
'start' => '31274945',
'end' => '31349547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-001'
),
'ENST00000558569' => array(
'start' => '31308345',
'end' => '31349255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-002'
),
'ENST00000560707' => array(
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'end' => '31305763',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TSHZ3-003'
),
'ENST00000363868' => array(
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'end' => '32244083',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP472-201'
),
'ENST00000365024' => array(
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'end' => '31787255',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-967P-201'
),
'ENST00000408577' => array(
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'end' => '31926688',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011456.1-201'
),
'ENST00000516971' => array(
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'end' => '31655461',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP471-201'
),
'ENST00000562167' => array(
'start' => '31588040',
'end' => '31595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.2-001'
),
'ENST00000592270' => array(
'start' => '31886704',
'end' => '31908284',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.1-001'
),
'ENST00000593211' => array(
'start' => '31922884',
'end' => '31945398',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.5-001'
),
'ENST00000591232' => array(
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'end' => '32106537',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-003'
),
'ENST00000592668' => array(
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'end' => '32105163',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-002'
),
'ENST00000593038' => array(
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'end' => '32104724',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-001'
),
'ENST00000591212' => array(
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'end' => '32105916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.1-001'
),
'ENST00000587702' => array(
'start' => '30946582',
'end' => '30957192',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.3-001'
),
'ENST00000593063' => array(
'start' => '31542039',
'end' => '31554797',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.1-001'
),
'ENST00000590611' => array(
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'end' => '31593781',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-003'
),
'ENST00000592644' => array(
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'end' => '31593039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-001'
),
'ENST00000592788' => array(
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'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-002'
),
'ENST00000590053' => array(
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'end' => '32025791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-001'
),
'ENST00000593082' => array(
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'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-002'
),
'ENST00000587779' => array(
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'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.2-001'
),
'ENST00000591132' => array(
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'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC008992.1-001'
),
'ENST00000585336' => array(
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'end' => '31417794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007796.1-001'
),
'ENST00000590021' => array(
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'end' => '31966969',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.2-001'
),
'ENST00000589511' => array(
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'end' => '31207663',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-439O9.3-001'
),
'ENST00000585739' => array(
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'end' => '32048883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-003'
),
'ENST00000588694' => array(
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'end' => '32039857',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-002'
),
'ENST00000589110' => array(
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'end' => '32056865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-005'
),
'ENST00000590719' => array(
'start' => '32040486',
'end' => '32048899',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-004'
),
'ENST00000593056' => array(
'start' => '32025862',
'end' => '32039643',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-001'
),
'ENST00000625085' => array(
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'end' => '31366098',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-439O9.1-001'
),
'ENSMUST00000021641' => array(
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'end' => '36773553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz3-001'
),
'ENSMUST00000176413' => array(
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'end' => '36702113',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tshz3-002'
),
'ENSMUST00000085513' => array(
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'end' => '38019542',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Uri1-001'
),
'ENSMUST00000056338' => array(
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'end' => '37769962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-001'
),
'ENSMUST00000175941' => array(
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'end' => '37769624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-003'
),
'ENSMUST00000176114' => array(
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'end' => '37770980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-004'
),
'ENSMUST00000176129' => array(
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'end' => '37479986',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-002'
),
'ENSMUST00000176137' => array(
'start' => '37710068',
'end' => '37773577',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp536-006'
),
'ENSMUST00000176205' => array(
'start' => '37479177',
'end' => '37772875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-005'
),
'ENSMUST00000176297' => array(
'start' => '37716318',
'end' => '37773562',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp536-007'
),
'ENSMUST00000176534' => array(
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'end' => '37773641',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-008'
),
'ENSMUST00000176680' => array(
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'end' => '37770782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-009'
),
'ENSMUST00000082657' => array(
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'end' => '37824347',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22302-201'
),
'ENSMUST00000119541' => array(
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'end' => '36118828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl17-ps9-001'
),
'ENSMUST00000158648' => array(
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'end' => '36751473',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24550-201'
),
'ENSMUST00000175475' => array(
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'end' => '36430700',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25247-201'
),
'ENSMUST00000175618' => array(
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'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23292-201'
),
'ENSMUST00000175854' => array(
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'end' => '37672228',
'transcript_biotype' => 'processed_transcript',
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),
'ENSMUST00000182882' => array(
'start' => '36234292',
'end' => '36235266',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9211-001'
),
'ENSMUST00000190250' => array(
'start' => '37299265',
'end' => '37304034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-291B1.1-001'
),
'ENSMUST00000188337' => array(
'start' => '37137011',
'end' => '37140382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.3-001'
),
'ENSMUST00000189179' => array(
'start' => '37140541',
'end' => '37141711',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.2-001'
),
'ENSMUST00000190381' => array(
'start' => '37119993',
'end' => '37128692',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.1-001'
),
'ENSMUST00000191121' => array(
'start' => '36568743',
'end' => '36573095',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-330B16.1-001'
),
'ENSDART00000125979' => array(
'start' => '14317977',
'end' => '14320941',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000142462' => array(
'start' => '14317854',
'end' => '14320748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000011823' => array(
'start' => '47573290',
'end' => '47581164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pop4-001'
),
'ENSDART00000141309' => array(
'start' => '47573342',
'end' => '47573899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pop4-003'
),
'ENSDART00000146388' => array(
'start' => '47573342',
'end' => '47580924',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'pop4-002'
),
'ENSDART00000007883' => array(
'start' => '47629579',
'end' => '47639396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-201'
),
'ENSDART00000133290' => array(
'start' => '47630367',
'end' => '47632769',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ccne1-003'
),
'ENSDART00000133570' => array(
'start' => '47629355',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-001'
),
'ENSDART00000136158' => array(
'start' => '47630031',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-002'
),
'ENSDART00000032123' => array(
'start' => '48338942',
'end' => '48342349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-201'
),
'ENSDART00000034068' => array(
'start' => '47981991',
'end' => '48095585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-001'
),
'ENSDART00000126085' => array(
'start' => '47980945',
'end' => '47984243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-201'
),
'ENSDART00000155115' => array(
'start' => '47981991',
'end' => '48041229',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-202'
),
'ENSDART00000036597' => array(
'start' => '47585060',
'end' => '47586479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'plekhf1-001'
),
'ENSDART00000098928' => array(
'start' => '47619385',
'end' => '47629279',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:162297-001'
),
'ENSDART00000142839' => array(
'start' => '47628251',
'end' => '47629052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zgc:162297-002'
),
'ENSDART00000120963' => array(
'start' => '48575831',
'end' => '48575947',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1244-201'
),
'ENSDART00000120996' => array(
'start' => '47778408',
'end' => '47778506',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.6-201'
),
'ENSDART00000128540' => array(
'start' => '48605326',
'end' => '48606050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BX005073.1-201'
),
'ENSDART00000129669' => array(
'start' => '47598327',
'end' => '47599909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (2 of 3)-201'
),
'ENSDART00000130868' => array(
'start' => '47835767',
'end' => '47835883',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1749-201'
),
'ENSDART00000120651' => array(
'start' => '48517958',
'end' => '48518072',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1897-201'
),
'ENSDART00000128599' => array(
'start' => '47614357',
'end' => '47618762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CR352229.1-201'
),
'ENSDART00000005087' => array(
'start' => '47601571',
'end' => '47603022',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-001'
),
'ENSDART00000124518' => array(
'start' => '47601150',
'end' => '47607717',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-201'
),
'ENSDART00000143669' => array(
'start' => '47602020',
'end' => '47603008',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C7H19orf12 (3 of 3)-002'
),
'ENSDART00000155999' => array(
'start' => '47743408',
'end' => '47843085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-139o14.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
'ENSG00000105176' => array(
[maximum depth reached]
),
'ENSG00000198597' => array(
[maximum depth reached]
),
'ENSG00000242100' => array(
[maximum depth reached]
),
'ENSG00000266910' => array(
[maximum depth reached]
),
'ENSG00000267006' => array(
[maximum depth reached]
),
'ENSG00000267258' => array(
[maximum depth reached]
),
'ENSG00000267692' => array(
[maximum depth reached]
),
'ENSG00000267760' => array(
[maximum depth reached]
),
'ENSG00000278895' => array(
[maximum depth reached]
),
'ENSG00000280061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Kidney',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Colon',
(int) 90 => 'Heart',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Ovary',
(int) 147 => 'Testis'
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
'ENSG00000121297' => array(
[maximum depth reached]
),
'ENSG00000221504' => array(
[maximum depth reached]
),
'ENSG00000261400' => array(
[maximum depth reached]
),
'ENSG00000267012' => array(
[maximum depth reached]
),
'ENSG00000267094' => array(
[maximum depth reached]
),
'ENSG00000267204' => array(
[maximum depth reached]
),
'ENSG00000267407' => array(
[maximum depth reached]
),
'ENSG00000267465' => array(
[maximum depth reached]
),
'ENSG00000267489' => array(
[maximum depth reached]
),
'ENSG00000267599' => array(
[maximum depth reached]
),
'ENSG00000267636' => array(
[maximum depth reached]
),
'ENSG00000267662' => array(
[maximum depth reached]
),
'ENSG00000267684' => array(
[maximum depth reached]
),
'ENSG00000267777' => array(
[maximum depth reached]
),
'ENSG00000278875' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Muscle',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Testis',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Brain',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Testis',
(int) 46 => 'Adrenal',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Colon',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Ovary',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis'
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000021217' => array(
[maximum depth reached]
),
'ENSMUSG00000030421' => array(
[maximum depth reached]
),
'ENSMUSG00000043456' => array(
[maximum depth reached]
),
'ENSMUSG00000066543' => array(
[maximum depth reached]
),
'ENSMUSG00000089273' => array(
[maximum depth reached]
),
'ENSMUSG00000093359' => array(
[maximum depth reached]
),
'ENSMUSG00000093540' => array(
[maximum depth reached]
),
'ENSMUSG00000098016' => array(
[maximum depth reached]
),
'ENSMUSG00000099715' => array(
[maximum depth reached]
),
'ENSMUSG00000100616' => array(
[maximum depth reached]
),
'ENSMUSG00000100905' => array(
[maximum depth reached]
),
'ENSMUSG00000101342' => array(
[maximum depth reached]
),
'ENSMUSG00000101965' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Lung',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Testis',
(int) 69 => 'Breast',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Brain',
(int) 87 => 'Colon',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Brain',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Bladder',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Bladder',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Placenta',
(int) 110 => 'Liver',
(int) 111 => 'Testis',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Breast',
(int) 116 => 'Liver',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Lung',
(int) 121 => 'Ovary'
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
'ENSDARG00000087394' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle'
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
'ENSDARG00000003263' => array(
[maximum depth reached]
),
'ENSDARG00000011133' => array(
[maximum depth reached]
),
'ENSDARG00000015959' => array(
[maximum depth reached]
),
'ENSDARG00000022251' => array(
[maximum depth reached]
),
'ENSDARG00000027852' => array(
[maximum depth reached]
),
'ENSDARG00000068410' => array(
[maximum depth reached]
),
'ENSDARG00000088089' => array(
[maximum depth reached]
),
'ENSDARG00000088500' => array(
[maximum depth reached]
),
'ENSDARG00000091600' => array(
[maximum depth reached]
),
'ENSDARG00000092703' => array(
[maximum depth reached]
),
'ENSDARG00000097109' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Liver',
(int) 15 => 'Heart',
(int) 16 => 'Liver',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Liver',
(int) 21 => 'Brain',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Muscle',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Kidney',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Brain',
(int) 34 => 'Heart',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Brain',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000105176' => 'URI1, prefoldin-like chaperone',
'ENSG00000198597' => 'zinc finger protein 536',
'ENSG00000223148' => null,
'ENSG00000242100' => 'ribosomal protein L9 pseudogene 32',
'ENSG00000261316' => null,
'ENSG00000266910' => null,
'ENSG00000267006' => null,
'ENSG00000267081' => null,
'ENSG00000267223' => null,
'ENSG00000267258' => null,
'ENSG00000267433' => null,
'ENSG00000267692' => 'TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3',
'ENSG00000267760' => null,
'ENSG00000278895' => null,
'ENSG00000280061' => null,
'ENSG00000121297' => 'teashirt zinc finger homeobox 3',
'ENSG00000200738' => 'RNA, 5S ribosomal pseudogene 472',
'ENSG00000201894' => 'RNA, U6 small nuclear 967, pseudogene',
'ENSG00000221504' => null,
'ENSG00000252780' => 'RNA, 5S ribosomal pseudogene 471',
'ENSG00000261400' => null,
'ENSG00000267012' => null,
'ENSG00000267094' => null,
'ENSG00000267133' => null,
'ENSG00000267204' => null,
'ENSG00000267378' => null,
'ENSG00000267407' => null,
'ENSG00000267465' => null,
'ENSG00000267489' => null,
'ENSG00000267599' => null,
'ENSG00000267636' => null,
'ENSG00000267662' => null,
'ENSG00000267684' => null,
'ENSG00000267777' => null,
'ENSG00000267779' => 'long intergenic non-protein coding RNA 1533',
'ENSG00000278875' => null,
'ENSMUSG00000021217' => 'teashirt zinc finger family member 3',
'ENSMUSG00000030421' => 'URI1, prefoldin-like chaperone',
'ENSMUSG00000043456' => 'zinc finger protein 536',
'ENSMUSG00000064591' => 'predicted gene, 22302',
'ENSMUSG00000066543' => 'ribosomal protein L17, pseudogene 9',
'ENSMUSG00000089273' => 'predicted gene, 24550',
'ENSMUSG00000093216' => 'predicted gene, 25247',
'ENSMUSG00000093359' => 'predicted gene, 23292',
'ENSMUSG00000093540' => 'RIKEN cDNA 4930505M18 gene',
'ENSMUSG00000098016' => 'predicted gene 9211',
'ENSMUSG00000099715' => 'predicted gene 28077',
'ENSMUSG00000100616' => 'predicted gene 28076',
'ENSMUSG00000100905' => 'predicted gene 28075',
'ENSMUSG00000101342' => 'predicted gene 28078',
'ENSMUSG00000101965' => 'predicted gene 29129',
'ENSDARG00000087394' => null,
'ENSDARG00000003263' => 'processing of precursor 4, ribonuclease P/MRP subunit',
'ENSDARG00000011133' => 'cyclin E1',
'ENSDARG00000015959' => 'teashirt zinc finger homeobox 3',
'ENSDARG00000022251' => 'zinc finger protein 536',
'ENSDARG00000027852' => 'pleckstrin homology domain containing, family F (with FYVE domain) member 1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S ribosomal RNA',
'ENSDARG00000085596' => 'Small nucleolar RNA U3',
'ENSDARG00000088089' => 'Uncharacterized protein',
'ENSDARG00000088500' => 'chromosome 19 open reading frame 12',
'ENSDARG00000089284' => '5S ribosomal RNA',
'ENSDARG00000091033' => '5S ribosomal RNA',
'ENSDARG00000091600' => 'Uncharacterized protein',
'ENSDARG00000092703' => 'chromosome 19 open reading frame 12',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
)
$gene_name_arr = array(
'ENSG00000105176' => 'URI1',
'ENSG00000198597' => 'ZNF536',
'ENSG00000223148' => 'AC011478.1',
'ENSG00000242100' => 'RPL9P32',
'ENSG00000261316' => 'CTC-400I9.1',
'ENSG00000266910' => 'CTC-448F2.6',
'ENSG00000267006' => 'CTC-448F2.4',
'ENSG00000267081' => 'CTC-400I9.2',
'ENSG00000267223' => 'AC005597.1',
'ENSG00000267258' => 'CTC-448F2.3',
'ENSG00000267433' => 'CTD-2057D4.2',
'ENSG00000267692' => 'TAF9P3',
'ENSG00000267760' => 'CTC-565M22.1',
'ENSG00000278895' => 'CTC-448F2.7',
'ENSG00000280061' => 'CTD-2001J20.1',
'ENSG00000121297' => 'TSHZ3',
'ENSG00000200738' => 'RNA5SP472',
'ENSG00000201894' => 'RNU6-967P',
'ENSG00000221504' => 'AC011456.1',
'ENSG00000252780' => 'RNA5SP471',
'ENSG00000261400' => 'AC011525.2',
'ENSG00000267012' => 'CTC-360P9.1',
'ENSG00000267094' => 'CTC-360P9.5',
'ENSG00000267133' => 'AC011518.2',
'ENSG00000267204' => 'AC011518.1',
'ENSG00000267378' => 'CTC-400I9.3',
'ENSG00000267407' => 'CTD-2050I18.1',
'ENSG00000267465' => 'AC011525.4',
'ENSG00000267489' => 'CTC-360P9.4',
'ENSG00000267599' => 'CTD-2050I18.2',
'ENSG00000267636' => 'AC008992.1',
'ENSG00000267662' => 'AC007796.1',
'ENSG00000267684' => 'CTC-360P9.2',
'ENSG00000267777' => 'CTC-439O9.3',
'ENSG00000267779' => 'LINC01533',
'ENSG00000278875' => 'CTC-439O9.1',
'ENSMUSG00000021217' => 'Tshz3',
'ENSMUSG00000030421' => 'Uri1',
'ENSMUSG00000043456' => 'Zfp536',
'ENSMUSG00000064591' => 'Gm22302',
'ENSMUSG00000066543' => 'Rpl17-ps9',
'ENSMUSG00000089273' => 'Gm24550',
'ENSMUSG00000093216' => 'Gm25247',
'ENSMUSG00000093359' => 'Gm23292',
'ENSMUSG00000093540' => '4930505M18Rik',
'ENSMUSG00000098016' => 'Gm9211',
'ENSMUSG00000099715' => 'RP23-291B1.1',
'ENSMUSG00000100616' => 'RP23-469D18.3',
'ENSMUSG00000100905' => 'RP23-469D18.2',
'ENSMUSG00000101342' => 'RP23-469D18.1',
'ENSMUSG00000101965' => 'RP23-330B16.1',
'ENSDARG00000087394' => '',
'ENSDARG00000003263' => 'pop4',
'ENSDARG00000011133' => 'ccne1',
'ENSDARG00000015959' => 'TSHZ3',
'ENSDARG00000022251' => 'znf536',
'ENSDARG00000027852' => 'plekhf1',
'ENSDARG00000068410' => 'zgc:162297',
'ENSDARG00000085563' => '5S_rRNA',
'ENSDARG00000085596' => 'U3',
'ENSDARG00000088089' => 'BX005073.1',
'ENSDARG00000088500' => 'C7H19orf12 (2 of 3)',
'ENSDARG00000089284' => '5S_rRNA',
'ENSDARG00000091033' => '5S_rRNA',
'ENSDARG00000091600' => 'CR352229.1',
'ENSDARG00000092703' => 'C7H19orf12 (3 of 3)',
'ENSDARG00000097109' => 'si:ch211-139o14.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '29888853',
'seq_end' => '30910612',
'region_length' => '1021759',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0002',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30910612',
'seq_end' => '30929220',
'region_length' => '18608',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0003',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30929221',
'seq_end' => '30930447',
'region_length' => '1226',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0004',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30930448',
'seq_end' => '32267062',
'region_length' => '1336614',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0005',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '35865981',
'seq_end' => '38051259',
'region_length' => '2185278',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0006',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '14316632',
'seq_end' => '14326961',
'region_length' => '10329',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0007',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '47420318',
'seq_end' => '48690356',
'region_length' => '1270038',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 53 => 'Brain',
(int) 97 => 'Breast',
(int) 125 => 'Colon',
(int) 152 => 'Heart',
(int) 188 => 'Kidney',
(int) 219 => 'Liver',
(int) 255 => 'Lung',
(int) 280 => 'Muscle',
(int) 311 => 'Ovary',
(int) 340 => 'Placenta',
(int) 357 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 114
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000360605' => array(
'start' => '29923644',
'end' => '30015695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-003'
),
'ENST00000392271' => array(
'start' => '29942251',
'end' => '30016608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-001'
),
'ENST00000570564' => array(
'start' => '29923657',
'end' => '29986377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-005'
),
'ENST00000570704' => array(
'start' => '29983233',
'end' => '30007579',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-007'
),
'ENST00000573052' => array(
'start' => '30012423',
'end' => '30015026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-010'
),
'ENST00000574110' => array(
'start' => '29942261',
'end' => '30015704',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-002'
),
'ENST00000574176' => array(
'start' => '30004295',
'end' => '30009019',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-008'
),
'ENST00000574233' => array(
'start' => '29923691',
'end' => '30005436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-012'
),
'ENST00000574666' => array(
'start' => '29942311',
'end' => '30005706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'URI1-006'
),
'ENST00000574766' => array(
'start' => '29923712',
'end' => '29937997',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'URI1-004'
),
'ENST00000575242' => array(
'start' => '30009080',
'end' => '30012899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-009'
),
'ENST00000576442' => array(
'start' => '29971093',
'end' => '30007547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-011'
),
'ENST00000585655' => array(
'start' => '29923734',
'end' => '29925897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'URI1-014'
),
'ENST00000355537' => array(
'start' => '30372412',
'end' => '30558059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-004'
),
'ENST00000585628' => array(
'start' => '30228514',
'end' => '30548468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-003'
),
'ENST00000590564' => array(
'start' => '30228290',
'end' => '30300669',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF536-001'
),
'ENST00000591488' => array(
'start' => '30228554',
'end' => '30443978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-002'
),
'ENST00000592773' => array(
'start' => '30549346',
'end' => '30713538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF536-005'
),
'ENST00000411216' => array(
'start' => '30614220',
'end' => '30614320',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011478.1-201'
),
'ENST00000464118' => array(
'start' => '29956369',
'end' => '29956988',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL9P32-001'
),
'ENST00000567374' => array(
'start' => '30907199',
'end' => '30909155',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.1-001'
),
'ENST00000587506' => array(
'start' => '30037423',
'end' => '30038156',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.6-001'
),
'ENST00000588402' => array(
'start' => '30028741',
'end' => '30029916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-448F2.4-001'
),
'ENST00000585364' => array(
'start' => '30850975',
'end' => '30872507',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.2-001'
),
'ENST00000588092' => array(
'start' => '30219666',
'end' => '30228715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC005597.1-001'
),
'ENST00000585753' => array(
'start' => '29921182',
'end' => '29921653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-448F2.3-001'
),
'ENST00000586584' => array(
'start' => '29901696',
'end' => '29901869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2057D4.2-001'
),
'ENST00000585464' => array(
'start' => '30037285',
'end' => '30037411',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TAF9P3-001'
),
'ENST00000593140' => array(
'start' => '30665274',
'end' => '30668647',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-565M22.1-001'
),
'ENST00000624591' => array(
'start' => '29915862',
'end' => '29917830',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-448F2.7-001'
),
'ENST00000623331' => array(
'start' => '30553956',
'end' => '30558058',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2001J20.1-001'
),
'ENST00000240587' => array(
'start' => '31274945',
'end' => '31349547',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-001'
),
'ENST00000558569' => array(
'start' => '31308345',
'end' => '31349255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-002'
),
'ENST00000560707' => array(
'start' => '31279194',
'end' => '31305763',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TSHZ3-003'
),
'ENST00000363868' => array(
'start' => '32243965',
'end' => '32244083',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP472-201'
),
'ENST00000365024' => array(
'start' => '31787148',
'end' => '31787255',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-967P-201'
),
'ENST00000408577' => array(
'start' => '31926573',
'end' => '31926688',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC011456.1-201'
),
'ENST00000516971' => array(
'start' => '31655356',
'end' => '31655461',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP471-201'
),
'ENST00000562167' => array(
'start' => '31588040',
'end' => '31595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.2-001'
),
'ENST00000592270' => array(
'start' => '31886704',
'end' => '31908284',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.1-001'
),
'ENST00000593211' => array(
'start' => '31922884',
'end' => '31945398',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.5-001'
),
'ENST00000591232' => array(
'start' => '32104980',
'end' => '32106537',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-003'
),
'ENST00000592668' => array(
'start' => '32104537',
'end' => '32105163',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-002'
),
'ENST00000593038' => array(
'start' => '32103583',
'end' => '32104724',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.2-001'
),
'ENST00000591212' => array(
'start' => '32102088',
'end' => '32105916',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011518.1-001'
),
'ENST00000587702' => array(
'start' => '30946582',
'end' => '30957192',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-400I9.3-001'
),
'ENST00000593063' => array(
'start' => '31542039',
'end' => '31554797',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.1-001'
),
'ENST00000590611' => array(
'start' => '31588255',
'end' => '31593781',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-003'
),
'ENST00000592644' => array(
'start' => '31592281',
'end' => '31593039',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-001'
),
'ENST00000592788' => array(
'start' => '31588196',
'end' => '31592763',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC011525.4-002'
),
'ENST00000590053' => array(
'start' => '31967099',
'end' => '32025791',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-001'
),
'ENST00000593082' => array(
'start' => '32002491',
'end' => '32025777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.4-002'
),
'ENST00000587779' => array(
'start' => '31465653',
'end' => '31466431',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2050I18.2-001'
),
'ENST00000591132' => array(
'start' => '31421997',
'end' => '31427302',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC008992.1-001'
),
'ENST00000585336' => array(
'start' => '31348881',
'end' => '31417794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007796.1-001'
),
'ENST00000590021' => array(
'start' => '31965642',
'end' => '31966969',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-360P9.2-001'
),
'ENST00000589511' => array(
'start' => '31167516',
'end' => '31207663',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-439O9.3-001'
),
'ENST00000585739' => array(
'start' => '32025982',
'end' => '32048883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-003'
),
'ENST00000588694' => array(
'start' => '32025895',
'end' => '32039857',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-002'
),
'ENST00000589110' => array(
'start' => '32048622',
'end' => '32056865',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-005'
),
'ENST00000590719' => array(
'start' => '32040486',
'end' => '32048899',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-004'
),
'ENST00000593056' => array(
'start' => '32025862',
'end' => '32039643',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01533-001'
),
'ENST00000625085' => array(
'start' => '31364297',
'end' => '31366098',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-439O9.1-001'
),
'ENSMUST00000021641' => array(
'start' => '36698118',
'end' => '36773553',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tshz3-001'
),
'ENSMUST00000176413' => array(
'start' => '36698217',
'end' => '36702113',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tshz3-002'
),
'ENSMUST00000085513' => array(
'start' => '37960002',
'end' => '38019542',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Uri1-001'
),
'ENSMUST00000056338' => array(
'start' => '37479109',
'end' => '37769962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-001'
),
'ENSMUST00000175941' => array(
'start' => '37479104',
'end' => '37769624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-003'
),
'ENSMUST00000176114' => array(
'start' => '37479122',
'end' => '37770980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-004'
),
'ENSMUST00000176129' => array(
'start' => '37472135',
'end' => '37479986',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-002'
),
'ENSMUST00000176137' => array(
'start' => '37710068',
'end' => '37773577',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp536-006'
),
'ENSMUST00000176205' => array(
'start' => '37479177',
'end' => '37772875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-005'
),
'ENSMUST00000176297' => array(
'start' => '37716318',
'end' => '37773562',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp536-007'
),
'ENSMUST00000176534' => array(
'start' => '37569629',
'end' => '37773641',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-008'
),
'ENSMUST00000176680' => array(
'start' => '37569499',
'end' => '37770782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp536-009'
),
'ENSMUST00000082657' => array(
'start' => '37824242',
'end' => '37824347',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22302-201'
),
'ENSMUST00000119541' => array(
'start' => '36118274',
'end' => '36118828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl17-ps9-001'
),
'ENSMUST00000158648' => array(
'start' => '36751195',
'end' => '36751473',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24550-201'
),
'ENSMUST00000175475' => array(
'start' => '36430611',
'end' => '36430700',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25247-201'
),
'ENSMUST00000175618' => array(
'start' => '36302515',
'end' => '36302615',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23292-201'
),
'ENSMUST00000175854' => array(
'start' => '37669799',
'end' => '37672228',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930505M18Rik-001'
),
'ENSMUST00000182882' => array(
'start' => '36234292',
'end' => '36235266',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9211-001'
),
'ENSMUST00000190250' => array(
'start' => '37299265',
'end' => '37304034',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-291B1.1-001'
),
'ENSMUST00000188337' => array(
'start' => '37137011',
'end' => '37140382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.3-001'
),
'ENSMUST00000189179' => array(
'start' => '37140541',
'end' => '37141711',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.2-001'
),
'ENSMUST00000190381' => array(
'start' => '37119993',
'end' => '37128692',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-469D18.1-001'
),
'ENSMUST00000191121' => array(
'start' => '36568743',
'end' => '36573095',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-330B16.1-001'
),
'ENSDART00000125979' => array(
'start' => '14317977',
'end' => '14320941',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000142462' => array(
'start' => '14317854',
'end' => '14320748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => ''
),
'ENSDART00000011823' => array(
'start' => '47573290',
'end' => '47581164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pop4-001'
),
'ENSDART00000141309' => array(
'start' => '47573342',
'end' => '47573899',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pop4-003'
),
'ENSDART00000146388' => array(
'start' => '47573342',
'end' => '47580924',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'pop4-002'
),
'ENSDART00000007883' => array(
'start' => '47629579',
'end' => '47639396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-201'
),
'ENSDART00000133290' => array(
'start' => '47630367',
'end' => '47632769',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ccne1-003'
),
'ENSDART00000133570' => array(
'start' => '47629355',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-001'
),
'ENSDART00000136158' => array(
'start' => '47630031',
'end' => '47632769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ccne1-002'
),
'ENSDART00000032123' => array(
'start' => '48338942',
'end' => '48342349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TSHZ3-201'
),
'ENSDART00000034068' => array(
'start' => '47981991',
'end' => '48095585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-001'
),
'ENSDART00000126085' => array(
'start' => '47980945',
'end' => '47984243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-201'
),
'ENSDART00000155115' => array(
'start' => '47981991',
'end' => '48041229',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf536-202'
),
'ENSDART00000036597' => array(
'start' => '47585060',
'end' => '47586479',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'plekhf1-001'
),
'ENSDART00000098928' => array(
'start' => '47619385',
'end' => '47629279',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zgc:162297-001'
),
'ENSDART00000142839' => array(
'start' => '47628251',
'end' => '47629052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'zgc:162297-002'
),
'ENSDART00000120963' => array(
'start' => '48575831',
'end' => '48575947',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1244-201'
),
'ENSDART00000120996' => array(
'start' => '47778408',
'end' => '47778506',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.6-201'
),
'ENSDART00000128540' => array(
'start' => '48605326',
'end' => '48606050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BX005073.1-201'
),
'ENSDART00000129669' => array(
'start' => '47598327',
'end' => '47599909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (2 of 3)-201'
),
'ENSDART00000130868' => array(
'start' => '47835767',
'end' => '47835883',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1749-201'
),
'ENSDART00000120651' => array(
'start' => '48517958',
'end' => '48518072',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1897-201'
),
'ENSDART00000128599' => array(
'start' => '47614357',
'end' => '47618762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CR352229.1-201'
),
'ENSDART00000005087' => array(
'start' => '47601571',
'end' => '47603022',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-001'
),
'ENSDART00000124518' => array(
'start' => '47601150',
'end' => '47607717',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C7H19orf12 (3 of 3)-201'
),
'ENSDART00000143669' => array(
'start' => '47602020',
'end' => '47603008',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C7H19orf12 (3 of 3)-002'
),
'ENSDART00000155999' => array(
'start' => '47743408',
'end' => '47843085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-139o14.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OB_0001' => array(
'genes_in_region' => array(
'ENSG00000105176' => array(
[maximum depth reached]
),
'ENSG00000198597' => array(
[maximum depth reached]
),
'ENSG00000242100' => array(
[maximum depth reached]
),
'ENSG00000266910' => array(
[maximum depth reached]
),
'ENSG00000267006' => array(
[maximum depth reached]
),
'ENSG00000267258' => array(
[maximum depth reached]
),
'ENSG00000267692' => array(
[maximum depth reached]
),
'ENSG00000267760' => array(
[maximum depth reached]
),
'ENSG00000278895' => array(
[maximum depth reached]
),
'ENSG00000280061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Kidney',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adrenal',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Colon',
(int) 90 => 'Heart',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Muscle',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Ovary',
(int) 147 => 'Testis'
)
),
'CIL_0007OB_0004' => array(
'genes_in_region' => array(
'ENSG00000121297' => array(
[maximum depth reached]
),
'ENSG00000221504' => array(
[maximum depth reached]
),
'ENSG00000261400' => array(
[maximum depth reached]
),
'ENSG00000267012' => array(
[maximum depth reached]
),
'ENSG00000267094' => array(
[maximum depth reached]
),
'ENSG00000267204' => array(
[maximum depth reached]
),
'ENSG00000267407' => array(
[maximum depth reached]
),
'ENSG00000267465' => array(
[maximum depth reached]
),
'ENSG00000267489' => array(
[maximum depth reached]
),
'ENSG00000267599' => array(
[maximum depth reached]
),
'ENSG00000267636' => array(
[maximum depth reached]
),
'ENSG00000267662' => array(
[maximum depth reached]
),
'ENSG00000267684' => array(
[maximum depth reached]
),
'ENSG00000267777' => array(
[maximum depth reached]
),
'ENSG00000278875' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Muscle',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Testis',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Brain',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Testis',
(int) 46 => 'Adrenal',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Colon',
(int) 50 => 'Testis',
(int) 51 => 'Testis',
(int) 52 => 'Ovary',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis'
)
),
'CIL_0007OB_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000021217' => array(
[maximum depth reached]
),
'ENSMUSG00000030421' => array(
[maximum depth reached]
),
'ENSMUSG00000043456' => array(
[maximum depth reached]
),
'ENSMUSG00000066543' => array(
[maximum depth reached]
),
'ENSMUSG00000089273' => array(
[maximum depth reached]
),
'ENSMUSG00000093359' => array(
[maximum depth reached]
),
'ENSMUSG00000093540' => array(
[maximum depth reached]
),
'ENSMUSG00000098016' => array(
[maximum depth reached]
),
'ENSMUSG00000099715' => array(
[maximum depth reached]
),
'ENSMUSG00000100616' => array(
[maximum depth reached]
),
'ENSMUSG00000100905' => array(
[maximum depth reached]
),
'ENSMUSG00000101342' => array(
[maximum depth reached]
),
'ENSMUSG00000101965' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adrenal',
(int) 29 => 'Brain',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Lung',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Testis',
(int) 69 => 'Breast',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Adipose',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Brain',
(int) 87 => 'Colon',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Brain',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Bladder',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Bladder',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Placenta',
(int) 110 => 'Liver',
(int) 111 => 'Testis',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Breast',
(int) 116 => 'Liver',
(int) 117 => 'Ovary',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Lung',
(int) 121 => 'Ovary'
)
),
'CIL_0007OB_0006' => array(
'genes_in_region' => array(
'ENSDARG00000087394' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle'
)
),
'CIL_0007OB_0007' => array(
'genes_in_region' => array(
'ENSDARG00000003263' => array(
[maximum depth reached]
),
'ENSDARG00000011133' => array(
[maximum depth reached]
),
'ENSDARG00000015959' => array(
[maximum depth reached]
),
'ENSDARG00000022251' => array(
[maximum depth reached]
),
'ENSDARG00000027852' => array(
[maximum depth reached]
),
'ENSDARG00000068410' => array(
[maximum depth reached]
),
'ENSDARG00000088089' => array(
[maximum depth reached]
),
'ENSDARG00000088500' => array(
[maximum depth reached]
),
'ENSDARG00000091600' => array(
[maximum depth reached]
),
'ENSDARG00000092703' => array(
[maximum depth reached]
),
'ENSDARG00000097109' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Liver',
(int) 15 => 'Heart',
(int) 16 => 'Liver',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Liver',
(int) 21 => 'Brain',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Muscle',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Liver',
(int) 29 => 'Kidney',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Brain',
(int) 34 => 'Heart',
(int) 35 => 'Liver',
(int) 36 => 'Muscle',
(int) 37 => 'Brain',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Brain',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OB_0002',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '30910612',
'seq_end' => '30929220',
'region_length' => '18608',
'region_type' => 'UCNEbase',
'el_id' => 'TSHZ3'
)
)
$gene_el = array(
'ENST00000623331' => array(
'Adipose' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.336',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '1.873',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.22'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.148',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.09'
),
'Lung' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.341',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000280061'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.336',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '1.873',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.22'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.148',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.109',
'stddev_FPKM' => '0.09'
),
'Lung' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.341',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000623331'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| TSHZ3 |
UCNEbase |
9606 |
19:30910612-30929220  |
| Gene | Transcript | Position | Biotype |
|---|
(URI1)