Institute of Cardiovascular Regeneration Webtool Repository

Region Summary

Notice (8): Undefined index: CIL_0007OQ_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0001',
		'tax_id' => '9606',
		'chromosome' => '18',
		'seq_start' => '37598637',
		'seq_end' => '37743385',
		'region_length' => '144748',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0001',
		'tax_id' => '9606',
		'chromosome' => '18',
		'seq_start' => '37598637',
		'seq_end' => '37743385',
		'region_length' => '144748',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
MIR4318		UCNEbase	9606	18:37598637-37743385
Gene		Transcript	Position	Biotype

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CIL_0007OQ_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MIR4318	UCNEbase	9606	18:37743385-39184430
Gene	Transcript	Position	Biotype
ENSG00000268566 (RP11-687D19.1)	ENST00000597142 (RP11-687D19.1-001)	38655209-38670994	lincRNA
	ENST00000597906 (RP11-687D19.1-002)	38655219-38660775	lincRNA
	ENST00000598549 (RP11-687D19.1-003)	38659249-38687998	lincRNA

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CIL_0007OQ_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MIR4318	UCNEbase	10090	18:25791971-26197317
Gene	Transcript	Position	Biotype
ENSMUSG00000087121 (Gm7847) predicted gene 7847	ENSMUST00000151645 (Gm7847-001)	25823581-25824357	processed_pseudogene

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CIL_0007OQ_0004 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0007OQ_0004 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0004',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '26784321',
		'seq_end' => '26784513',
		'region_length' => '192',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
$gene_el = array(
	'ENSMUST00000151645' => array(
		'Adipose' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.107',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.079',
			'stddev_FPKM' => '0.04'
		),
		'Colon' => array(
			'average_FPKM' => '0.095',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.065',
			'stddev_FPKM' => '0.06'
		),
		'Ovary' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.073',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.043',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000087121'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.107',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.079',
		'stddev_FPKM' => '0.04'
	),
	'Colon' => array(
		'average_FPKM' => '0.095',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.065',
		'stddev_FPKM' => '0.06'
	),
	'Ovary' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.073',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.043',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000151645'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0004',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '26784321',
		'seq_end' => '26784513',
		'region_length' => '192',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
$gene_el = array(
	'ENSMUST00000151645' => array(
		'Adipose' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.107',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.079',
			'stddev_FPKM' => '0.04'
		),
		'Colon' => array(
			'average_FPKM' => '0.095',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.065',
			'stddev_FPKM' => '0.06'
		),
		'Ovary' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.073',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.043',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000087121'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.107',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.079',
		'stddev_FPKM' => '0.04'
	),
	'Colon' => array(
		'average_FPKM' => '0.095',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.065',
		'stddev_FPKM' => '0.06'
	),
	'Ovary' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.073',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.043',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000151645'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
MIR4318		UCNEbase	10090	18:26784321-26784513
Gene		Transcript	Position	Biotype

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Genes

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Transcripts

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CIL_0007OQ_0005 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0007OQ_0005 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0005',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '27299411',
		'seq_end' => '27497945',
		'region_length' => '198534',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
$gene_el = array(
	'ENSMUST00000151645' => array(
		'Adipose' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.107',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.079',
			'stddev_FPKM' => '0.04'
		),
		'Colon' => array(
			'average_FPKM' => '0.095',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.065',
			'stddev_FPKM' => '0.06'
		),
		'Ovary' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.073',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.043',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000087121'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.107',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.079',
		'stddev_FPKM' => '0.04'
	),
	'Colon' => array(
		'average_FPKM' => '0.095',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.065',
		'stddev_FPKM' => '0.06'
	),
	'Ovary' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.073',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.043',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000151645'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000243516' => null,
		'ENSG00000266530' => 'microRNA 4318',
		'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
		'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
		'ENSG00000268566' => null,
		'ENSMUSG00000087121' => 'predicted gene 7847'
	),
	'gene_name_arr' => array(
		'ENSG00000243516' => 'RP11-19F9.1',
		'ENSG00000266530' => 'MIR4318',
		'ENSG00000222704' => 'RN7SKP182',
		'ENSG00000253038' => 'RNU6-706P',
		'ENSG00000268566' => 'RP11-687D19.1',
		'ENSMUSG00000087121' => 'Gm7847'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 4 => 'Colon',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Ovary',
		(int) 11 => 'Placenta',
		(int) 12 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 8,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000467028' => array(
			'start' => '37672689',
			'end' => '37673176',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-19F9.1-001'
		),
		'ENST00000580543' => array(
			'start' => '37657135',
			'end' => '37657215',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4318-201'
		),
		'ENST00000410772' => array(
			'start' => '39016047',
			'end' => '39016344',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP182-201'
		),
		'ENST00000517229' => array(
			'start' => '39034007',
			'end' => '39034110',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-706P-201'
		),
		'ENST00000597142' => array(
			'start' => '38655209',
			'end' => '38670994',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-001'
		),
		'ENST00000597906' => array(
			'start' => '38655219',
			'end' => '38660775',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-002'
		),
		'ENST00000598549' => array(
			'start' => '38659249',
			'end' => '38687998',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-687D19.1-003'
		),
		'ENSMUST00000151645' => array(
			'start' => '25823581',
			'end' => '25824357',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'Gm7847-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007OQ_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007OQ_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000243516' => null,
	'ENSG00000266530' => 'microRNA 4318',
	'ENSG00000222704' => 'RNA, 7SK small nuclear pseudogene 182',
	'ENSG00000253038' => 'RNA, U6 small nuclear 706, pseudogene',
	'ENSG00000268566' => null,
	'ENSMUSG00000087121' => 'predicted gene 7847'
)
$gene_name_arr = array(
	'ENSG00000243516' => 'RP11-19F9.1',
	'ENSG00000266530' => 'MIR4318',
	'ENSG00000222704' => 'RN7SKP182',
	'ENSG00000253038' => 'RNU6-706P',
	'ENSG00000268566' => 'RP11-687D19.1',
	'ENSMUSG00000087121' => 'Gm7847'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37598637',
			'seq_end' => '37743385',
			'region_length' => '144748',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0002',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '37743385',
			'seq_end' => '39184430',
			'region_length' => '1441045',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0003',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '25791971',
			'seq_end' => '26197317',
			'region_length' => '405346',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0004',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '26784321',
			'seq_end' => '26784513',
			'region_length' => '192',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007OQ_0005',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '27299411',
			'seq_end' => '27497945',
			'region_length' => '198534',
			'region_type' => 'UCNEbase',
			'el_id' => 'MIR4318'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 4 => 'Colon',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Ovary',
	(int) 11 => 'Placenta',
	(int) 12 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 8
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000467028' => array(
		'start' => '37672689',
		'end' => '37673176',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-19F9.1-001'
	),
	'ENST00000580543' => array(
		'start' => '37657135',
		'end' => '37657215',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4318-201'
	),
	'ENST00000410772' => array(
		'start' => '39016047',
		'end' => '39016344',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP182-201'
	),
	'ENST00000517229' => array(
		'start' => '39034007',
		'end' => '39034110',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-706P-201'
	),
	'ENST00000597142' => array(
		'start' => '38655209',
		'end' => '38670994',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-001'
	),
	'ENST00000597906' => array(
		'start' => '38655219',
		'end' => '38660775',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-002'
	),
	'ENST00000598549' => array(
		'start' => '38659249',
		'end' => '38687998',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-687D19.1-003'
	),
	'ENSMUST00000151645' => array(
		'start' => '25823581',
		'end' => '25824357',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'Gm7847-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007OQ_0002' => array(
		'genes_in_region' => array(
			'ENSG00000268566' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Ovary',
			(int) 2 => 'Testis',
			(int) 3 => 'Lung'
		)
	),
	'CIL_0007OQ_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000087121' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Colon',
			(int) 5 => 'Kidney',
			(int) 6 => 'Liver',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007OQ_0005',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '27299411',
		'seq_end' => '27497945',
		'region_length' => '198534',
		'region_type' => 'UCNEbase',
		'el_id' => 'MIR4318'
	)
)
$gene_el = array(
	'ENSMUST00000151645' => array(
		'Adipose' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.107',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.006',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.079',
			'stddev_FPKM' => '0.04'
		),
		'Colon' => array(
			'average_FPKM' => '0.095',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.065',
			'stddev_FPKM' => '0.06'
		),
		'Ovary' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.073',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.043',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000087121'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.107',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.006',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.079',
		'stddev_FPKM' => '0.04'
	),
	'Colon' => array(
		'average_FPKM' => '0.095',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.065',
		'stddev_FPKM' => '0.06'
	),
	'Ovary' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.073',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.043',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000151645'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
MIR4318		UCNEbase	10090	18:27299411-27497945
Gene		Transcript	Position	Biotype

Genome

Exciting message

Genes

Connecting

Transcripts

Connecting

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Colon

Kidney

Liver

Lung

Ovary

Placenta

Testis

ENSG00000268566

ENST00000597142

N/A

0.186±0.00

0.078±0.00

N/A

0.209±0.04

ENST00000597906

N/A

0.918±0.00

N/A

ENST00000598549

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Colon

Kidney

Liver

Lung

Ovary

Placenta

Testis

ENSMUSG00000087121

ENSMUST00000151645

0.049±0.00

0.107±0.00

0.006±0.00

0.079±0.04

0.095±0.00

0.049±0.00

0.065±0.06

N/A

0.081±0.00

0.073±0.00

0.043±0.00

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Mus musculus Ensembl (GRCm38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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