| Source ID |
Type |
Tax ID |
Position |
| KCTD15 |
UCNEbase |
7955 |
18:1722981-1734525  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007OY_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000153885' => 'potassium channel tetramerization domain containing 15',
'ENSMUSG00000030499' => 'potassium channel tetramerisation domain containing 15',
'ENSMUSG00000085923' => 'predicted gene 12781'
),
'gene_name_arr' => array(
'ENSG00000153885' => 'KCTD15',
'ENSMUSG00000030499' => 'Kctd15',
'ENSMUSG00000085923' => 'Gm12781'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 9 => 'Breast',
(int) 12 => 'Colon',
(int) 15 => 'Heart',
(int) 18 => 'Kidney',
(int) 21 => 'Liver',
(int) 24 => 'Lung',
(int) 29 => 'Muscle',
(int) 32 => 'Ovary',
(int) 37 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000284006' => array(
'start' => '33796862',
'end' => '33815763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-001'
),
'ENST00000430256' => array(
'start' => '33798386',
'end' => '33814243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-003'
),
'ENST00000587559' => array(
'start' => '33796416',
'end' => '33807006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-006'
),
'ENST00000587658' => array(
'start' => '33795933',
'end' => '33806958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-005'
),
'ENST00000588637' => array(
'start' => '33796454',
'end' => '33806868',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-008'
),
'ENST00000588881' => array(
'start' => '33796902',
'end' => '33812970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-002'
),
'ENST00000589786' => array(
'start' => '33796862',
'end' => '33813472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-004'
),
'ENST00000590385' => array(
'start' => '33806924',
'end' => '33811828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-012'
),
'ENST00000590771' => array(
'start' => '33796846',
'end' => '33801285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-007'
),
'ENST00000590906' => array(
'start' => '33798337',
'end' => '33801332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-009'
),
'ENST00000592210' => array(
'start' => '33798699',
'end' => '33801748',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD15-010'
),
'ENST00000592363' => array(
'start' => '33813811',
'end' => '33814176',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD15-011'
),
'ENSMUST00000032709' => array(
'start' => '34639019',
'end' => '34655509',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-002'
),
'ENSMUST00000108069' => array(
'start' => '34639014',
'end' => '34654398',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-001'
),
'ENSMUST00000108070' => array(
'start' => '34639015',
'end' => '34652837',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-005'
),
'ENSMUST00000127425' => array(
'start' => '34652632',
'end' => '34653026',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-004'
),
'ENSMUST00000155093' => array(
'start' => '34652632',
'end' => '34653312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-003'
),
'ENSMUST00000146269' => array(
'start' => '34653184',
'end' => '34660416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12781-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
'ENSG00000153885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Muscle',
(int) 11 => 'Placenta'
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000030499' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000153885' => 'potassium channel tetramerization domain containing 15',
'ENSMUSG00000030499' => 'potassium channel tetramerisation domain containing 15',
'ENSMUSG00000085923' => 'predicted gene 12781'
)
$gene_name_arr = array(
'ENSG00000153885' => 'KCTD15',
'ENSMUSG00000030499' => 'Kctd15',
'ENSMUSG00000085923' => 'Gm12781'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '33794149',
'seq_end' => '33878199',
'region_length' => '84050',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0002',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '34596753',
'seq_end' => '34656980',
'region_length' => '60227',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0003',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '35076458',
'seq_end' => '35076598',
'region_length' => '140',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0004',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '1722981',
'seq_end' => '1734525',
'region_length' => '11544',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 9 => 'Breast',
(int) 12 => 'Colon',
(int) 15 => 'Heart',
(int) 18 => 'Kidney',
(int) 21 => 'Liver',
(int) 24 => 'Lung',
(int) 29 => 'Muscle',
(int) 32 => 'Ovary',
(int) 37 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000284006' => array(
'start' => '33796862',
'end' => '33815763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-001'
),
'ENST00000430256' => array(
'start' => '33798386',
'end' => '33814243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-003'
),
'ENST00000587559' => array(
'start' => '33796416',
'end' => '33807006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-006'
),
'ENST00000587658' => array(
'start' => '33795933',
'end' => '33806958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-005'
),
'ENST00000588637' => array(
'start' => '33796454',
'end' => '33806868',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-008'
),
'ENST00000588881' => array(
'start' => '33796902',
'end' => '33812970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-002'
),
'ENST00000589786' => array(
'start' => '33796862',
'end' => '33813472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-004'
),
'ENST00000590385' => array(
'start' => '33806924',
'end' => '33811828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-012'
),
'ENST00000590771' => array(
'start' => '33796846',
'end' => '33801285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-007'
),
'ENST00000590906' => array(
'start' => '33798337',
'end' => '33801332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-009'
),
'ENST00000592210' => array(
'start' => '33798699',
'end' => '33801748',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD15-010'
),
'ENST00000592363' => array(
'start' => '33813811',
'end' => '33814176',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD15-011'
),
'ENSMUST00000032709' => array(
'start' => '34639019',
'end' => '34655509',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-002'
),
'ENSMUST00000108069' => array(
'start' => '34639014',
'end' => '34654398',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-001'
),
'ENSMUST00000108070' => array(
'start' => '34639015',
'end' => '34652837',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-005'
),
'ENSMUST00000127425' => array(
'start' => '34652632',
'end' => '34653026',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-004'
),
'ENSMUST00000155093' => array(
'start' => '34652632',
'end' => '34653312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-003'
),
'ENSMUST00000146269' => array(
'start' => '34653184',
'end' => '34660416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12781-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
'ENSG00000153885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Muscle',
(int) 11 => 'Placenta'
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000030499' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0004',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '1722981',
'seq_end' => '1734525',
'region_length' => '11544',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
)
$gene_el = array(
'ENSMUST00000032709' => array(
'Adrenal' => array(
'average_FPKM' => '1.383',
'stddev_FPKM' => '0.37'
),
'Breast' => array(
'average_FPKM' => '2.318',
'stddev_FPKM' => '0.81'
),
'Colon' => array(
'average_FPKM' => '1.935',
'stddev_FPKM' => '0.94'
),
'Kidney' => array(
'average_FPKM' => '1.544',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '1.015',
'stddev_FPKM' => '0.35'
),
'Lung' => array(
'average_FPKM' => '1.905',
'stddev_FPKM' => '0.52'
),
'Ovary' => array(
'average_FPKM' => '5.750',
'stddev_FPKM' => '2.08'
),
'Testis' => array(
'average_FPKM' => '0.469',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000108069' => array(
'Adipose' => array(
'average_FPKM' => '17.509',
'stddev_FPKM' => '8.00'
),
'Adrenal' => array(
'average_FPKM' => '4.223',
'stddev_FPKM' => '1.60'
),
'Bladder' => array(
'average_FPKM' => '24.066',
'stddev_FPKM' => '4.54'
),
'Brain' => array(
'average_FPKM' => '22.515',
'stddev_FPKM' => '16.31'
),
'Breast' => array(
'average_FPKM' => '9.326',
'stddev_FPKM' => '5.57'
),
'Colon' => array(
'average_FPKM' => '4.795',
'stddev_FPKM' => '0.73'
),
'Heart' => array(
'average_FPKM' => '1.494',
'stddev_FPKM' => '0.65'
),
'Kidney' => array(
'average_FPKM' => '5.338',
'stddev_FPKM' => '1.33'
),
'Liver' => array(
'average_FPKM' => '1.856',
'stddev_FPKM' => '0.97'
),
'Lung' => array(
'average_FPKM' => '8.803',
'stddev_FPKM' => '1.93'
),
'Muscle' => array(
'average_FPKM' => '24.458',
'stddev_FPKM' => '6.74'
),
'Ovary' => array(
'average_FPKM' => '18.070',
'stddev_FPKM' => '6.24'
),
'Placenta' => array(
'average_FPKM' => '7.405',
'stddev_FPKM' => '2.09'
),
'Testis' => array(
'average_FPKM' => '0.836',
'stddev_FPKM' => '0.45'
)
),
'ENSMUST00000108070' => array(
'Adrenal' => array(
'average_FPKM' => '0.587',
'stddev_FPKM' => '0.13'
),
'Bladder' => array(
'average_FPKM' => '4.888',
'stddev_FPKM' => '1.15'
),
'Brain' => array(
'average_FPKM' => '0.792',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '2.757',
'stddev_FPKM' => '0.32'
),
'Heart' => array(
'average_FPKM' => '0.518',
'stddev_FPKM' => '0.11'
),
'Kidney' => array(
'average_FPKM' => '1.985',
'stddev_FPKM' => '0.72'
),
'Liver' => array(
'average_FPKM' => '0.779',
'stddev_FPKM' => '0.69'
),
'Lung' => array(
'average_FPKM' => '1.929',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '6.674',
'stddev_FPKM' => '1.51'
),
'Placenta' => array(
'average_FPKM' => '4.066',
'stddev_FPKM' => '1.72'
),
'Testis' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.34'
)
),
'ENSMUST00000127425' => array(),
'ENSMUST00000155093' => array()
)
$gene_key = 'ENSMUSG00000030499'
$is_first = false
$tran_el = array()
$tran_key = 'ENSMUST00000155093'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000153885' => 'potassium channel tetramerization domain containing 15',
'ENSMUSG00000030499' => 'potassium channel tetramerisation domain containing 15',
'ENSMUSG00000085923' => 'predicted gene 12781'
),
'gene_name_arr' => array(
'ENSG00000153885' => 'KCTD15',
'ENSMUSG00000030499' => 'Kctd15',
'ENSMUSG00000085923' => 'Gm12781'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 9 => 'Breast',
(int) 12 => 'Colon',
(int) 15 => 'Heart',
(int) 18 => 'Kidney',
(int) 21 => 'Liver',
(int) 24 => 'Lung',
(int) 29 => 'Muscle',
(int) 32 => 'Ovary',
(int) 37 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000284006' => array(
'start' => '33796862',
'end' => '33815763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-001'
),
'ENST00000430256' => array(
'start' => '33798386',
'end' => '33814243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-003'
),
'ENST00000587559' => array(
'start' => '33796416',
'end' => '33807006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-006'
),
'ENST00000587658' => array(
'start' => '33795933',
'end' => '33806958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-005'
),
'ENST00000588637' => array(
'start' => '33796454',
'end' => '33806868',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-008'
),
'ENST00000588881' => array(
'start' => '33796902',
'end' => '33812970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-002'
),
'ENST00000589786' => array(
'start' => '33796862',
'end' => '33813472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-004'
),
'ENST00000590385' => array(
'start' => '33806924',
'end' => '33811828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-012'
),
'ENST00000590771' => array(
'start' => '33796846',
'end' => '33801285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-007'
),
'ENST00000590906' => array(
'start' => '33798337',
'end' => '33801332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-009'
),
'ENST00000592210' => array(
'start' => '33798699',
'end' => '33801748',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD15-010'
),
'ENST00000592363' => array(
'start' => '33813811',
'end' => '33814176',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD15-011'
),
'ENSMUST00000032709' => array(
'start' => '34639019',
'end' => '34655509',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-002'
),
'ENSMUST00000108069' => array(
'start' => '34639014',
'end' => '34654398',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-001'
),
'ENSMUST00000108070' => array(
'start' => '34639015',
'end' => '34652837',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-005'
),
'ENSMUST00000127425' => array(
'start' => '34652632',
'end' => '34653026',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-004'
),
'ENSMUST00000155093' => array(
'start' => '34652632',
'end' => '34653312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-003'
),
'ENSMUST00000146269' => array(
'start' => '34653184',
'end' => '34660416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12781-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
'ENSG00000153885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Muscle',
(int) 11 => 'Placenta'
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000030499' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000153885' => 'potassium channel tetramerization domain containing 15',
'ENSMUSG00000030499' => 'potassium channel tetramerisation domain containing 15',
'ENSMUSG00000085923' => 'predicted gene 12781'
)
$gene_name_arr = array(
'ENSG00000153885' => 'KCTD15',
'ENSMUSG00000030499' => 'Kctd15',
'ENSMUSG00000085923' => 'Gm12781'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0001',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '33794149',
'seq_end' => '33878199',
'region_length' => '84050',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0002',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '34596753',
'seq_end' => '34656980',
'region_length' => '60227',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0003',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '35076458',
'seq_end' => '35076598',
'region_length' => '140',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0004',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '1722981',
'seq_end' => '1734525',
'region_length' => '11544',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 9 => 'Breast',
(int) 12 => 'Colon',
(int) 15 => 'Heart',
(int) 18 => 'Kidney',
(int) 21 => 'Liver',
(int) 24 => 'Lung',
(int) 29 => 'Muscle',
(int) 32 => 'Ovary',
(int) 37 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000284006' => array(
'start' => '33796862',
'end' => '33815763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-001'
),
'ENST00000430256' => array(
'start' => '33798386',
'end' => '33814243',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-003'
),
'ENST00000587559' => array(
'start' => '33796416',
'end' => '33807006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-006'
),
'ENST00000587658' => array(
'start' => '33795933',
'end' => '33806958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-005'
),
'ENST00000588637' => array(
'start' => '33796454',
'end' => '33806868',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-008'
),
'ENST00000588881' => array(
'start' => '33796902',
'end' => '33812970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-002'
),
'ENST00000589786' => array(
'start' => '33796862',
'end' => '33813472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-004'
),
'ENST00000590385' => array(
'start' => '33806924',
'end' => '33811828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-012'
),
'ENST00000590771' => array(
'start' => '33796846',
'end' => '33801285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-007'
),
'ENST00000590906' => array(
'start' => '33798337',
'end' => '33801332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD15-009'
),
'ENST00000592210' => array(
'start' => '33798699',
'end' => '33801748',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD15-010'
),
'ENST00000592363' => array(
'start' => '33813811',
'end' => '33814176',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD15-011'
),
'ENSMUST00000032709' => array(
'start' => '34639019',
'end' => '34655509',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-002'
),
'ENSMUST00000108069' => array(
'start' => '34639014',
'end' => '34654398',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-001'
),
'ENSMUST00000108070' => array(
'start' => '34639015',
'end' => '34652837',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd15-005'
),
'ENSMUST00000127425' => array(
'start' => '34652632',
'end' => '34653026',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-004'
),
'ENSMUST00000155093' => array(
'start' => '34652632',
'end' => '34653312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Kctd15-003'
),
'ENSMUST00000146269' => array(
'start' => '34653184',
'end' => '34660416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12781-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OY_0001' => array(
'genes_in_region' => array(
'ENSG00000153885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Muscle',
(int) 11 => 'Placenta'
)
),
'CIL_0007OY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000030499' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OY_0004',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '1722981',
'seq_end' => '1734525',
'region_length' => '11544',
'region_type' => 'UCNEbase',
'el_id' => 'KCTD15'
)
)
$gene_el = array(
'ENSMUST00000032709' => array(
'Adrenal' => array(
'average_FPKM' => '1.383',
'stddev_FPKM' => '0.37'
),
'Breast' => array(
'average_FPKM' => '2.318',
'stddev_FPKM' => '0.81'
),
'Colon' => array(
'average_FPKM' => '1.935',
'stddev_FPKM' => '0.94'
),
'Kidney' => array(
'average_FPKM' => '1.544',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '1.015',
'stddev_FPKM' => '0.35'
),
'Lung' => array(
'average_FPKM' => '1.905',
'stddev_FPKM' => '0.52'
),
'Ovary' => array(
'average_FPKM' => '5.750',
'stddev_FPKM' => '2.08'
),
'Testis' => array(
'average_FPKM' => '0.469',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000108069' => array(
'Adipose' => array(
'average_FPKM' => '17.509',
'stddev_FPKM' => '8.00'
),
'Adrenal' => array(
'average_FPKM' => '4.223',
'stddev_FPKM' => '1.60'
),
'Bladder' => array(
'average_FPKM' => '24.066',
'stddev_FPKM' => '4.54'
),
'Brain' => array(
'average_FPKM' => '22.515',
'stddev_FPKM' => '16.31'
),
'Breast' => array(
'average_FPKM' => '9.326',
'stddev_FPKM' => '5.57'
),
'Colon' => array(
'average_FPKM' => '4.795',
'stddev_FPKM' => '0.73'
),
'Heart' => array(
'average_FPKM' => '1.494',
'stddev_FPKM' => '0.65'
),
'Kidney' => array(
'average_FPKM' => '5.338',
'stddev_FPKM' => '1.33'
),
'Liver' => array(
'average_FPKM' => '1.856',
'stddev_FPKM' => '0.97'
),
'Lung' => array(
'average_FPKM' => '8.803',
'stddev_FPKM' => '1.93'
),
'Muscle' => array(
'average_FPKM' => '24.458',
'stddev_FPKM' => '6.74'
),
'Ovary' => array(
'average_FPKM' => '18.070',
'stddev_FPKM' => '6.24'
),
'Placenta' => array(
'average_FPKM' => '7.405',
'stddev_FPKM' => '2.09'
),
'Testis' => array(
'average_FPKM' => '0.836',
'stddev_FPKM' => '0.45'
)
),
'ENSMUST00000108070' => array(
'Adrenal' => array(
'average_FPKM' => '0.587',
'stddev_FPKM' => '0.13'
),
'Bladder' => array(
'average_FPKM' => '4.888',
'stddev_FPKM' => '1.15'
),
'Brain' => array(
'average_FPKM' => '0.792',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '2.757',
'stddev_FPKM' => '0.32'
),
'Heart' => array(
'average_FPKM' => '0.518',
'stddev_FPKM' => '0.11'
),
'Kidney' => array(
'average_FPKM' => '1.985',
'stddev_FPKM' => '0.72'
),
'Liver' => array(
'average_FPKM' => '0.779',
'stddev_FPKM' => '0.69'
),
'Lung' => array(
'average_FPKM' => '1.929',
'stddev_FPKM' => '0.01'
),
'Ovary' => array(
'average_FPKM' => '6.674',
'stddev_FPKM' => '1.51'
),
'Placenta' => array(
'average_FPKM' => '4.066',
'stddev_FPKM' => '1.72'
),
'Testis' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.34'
)
),
'ENSMUST00000127425' => array(),
'ENSMUST00000155093' => array()
)
$gene_key = 'ENSMUSG00000030499'
$is_first = false
$tran_el = array()
$tran_key = 'ENSMUST00000155093'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(KCTD15)