Notice (8): Undefined index: CIL_0007P3_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000091656' => 'zinc finger homeobox 4',
'ENSG00000221029' => null,
'ENSG00000222231' => 'RNA, U2 small nuclear 54, pseudogene',
'ENSG00000253661' => 'ZFHX4 antisense RNA 1',
'ENSG00000253681' => null,
'ENSG00000254300' => 'long intergenic non-protein coding RNA 1111',
'ENSG00000254305' => 'mitochondrial ribosomal protein L9 pseudogene 1',
'ENSG00000270866' => null,
'ENSG00000271167' => 'long intergenic non-protein coding RNA 1109',
'ENSG00000164751' => 'peroxisomal biogenesis factor 2',
'ENSG00000253416' => null,
'ENSG00000253952' => 'HIG1 hypoxia inducible domain family, member 1A pseudogene 18',
'ENSG00000254366' => null,
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'TUC338',
'ENSMUSG00000025255' => 'zinc finger homeodomain 4',
'ENSMUSG00000040374' => 'peroxisomal biogenesis factor 2',
'ENSMUSG00000069118' => 'RIKEN cDNA 1700008P02 gene',
'ENSMUSG00000069125' => 'ribosomal protein S24, pseudogene 2',
'ENSMUSG00000077995' => 'predicted gene, 23937',
'ENSMUSG00000086224' => 'RIKEN cDNA 2700069I18 gene',
'ENSMUSG00000089287' => 'predicted gene, 22944',
'ENSMUSG00000091223' => 'predicted gene 8775',
'ENSMUSG00000093557' => 'RIKEN cDNA 4930555M17 gene',
'ENSMUSG00000093835' => 'predicted gene, 23147',
'ENSMUSG00000094830' => 'nuclear encoded rRNA 5S 194',
'ENSMUSG00000095818' => 'predicted gene, 24954',
'ENSMUSG00000096130' => 'predicted gene, 25144',
'ENSMUSG00000096384' => 'predicted gene, 25352',
'ENSMUSG00000096480' => 'predicted gene, 23976',
'ENSMUSG00000096922' => 'predicted gene, 17308',
'ENSMUSG00000098226' => 'predicted gene 5272',
'ENSMUSG00000098659' => 'RIKEN cDNA 1110015O18 gene',
'ENSDARG00000062421' => 'peroxisomal biogenesis factor 2',
'ENSDARG00000075542' => 'zinc finger homeobox 4',
'ENSDARG00000084789' => '5S ribosomal RNA',
'ENSDARG00000084838' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000091656' => 'ZFHX4',
'ENSG00000221029' => 'AC016194.1',
'ENSG00000222231' => 'RNU2-54P',
'ENSG00000253661' => 'ZFHX4-AS1',
'ENSG00000253681' => 'RP11-115I9.1',
'ENSG00000254300' => 'LINC01111',
'ENSG00000254305' => 'MRPL9P1',
'ENSG00000270866' => 'RP11-706J10.2',
'ENSG00000271167' => 'LINC01109',
'ENSG00000164751' => 'PEX2',
'ENSG00000253416' => 'RP11-48D4.2',
'ENSG00000253952' => 'HIGD1AP18',
'ENSG00000254366' => 'RP11-38H17.1',
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'uc_338',
'ENSMUSG00000025255' => 'Zfhx4',
'ENSMUSG00000040374' => 'Pex2',
'ENSMUSG00000069118' => '1700008P02Rik',
'ENSMUSG00000069125' => 'Rps24-ps2',
'ENSMUSG00000077995' => 'Gm23937',
'ENSMUSG00000086224' => '2700069I18Rik',
'ENSMUSG00000089287' => 'Gm22944',
'ENSMUSG00000091223' => 'Gm8775',
'ENSMUSG00000093557' => '4930555M17Rik',
'ENSMUSG00000093835' => 'Gm23147',
'ENSMUSG00000094830' => 'n-R5s194',
'ENSMUSG00000095818' => 'Gm24954',
'ENSMUSG00000096130' => 'Gm25144',
'ENSMUSG00000096384' => 'Gm25352',
'ENSMUSG00000096480' => 'Gm23976',
'ENSMUSG00000096922' => 'Gm17308',
'ENSMUSG00000098226' => 'Gm5272',
'ENSMUSG00000098659' => '1110015O18Rik',
'ENSDARG00000062421' => 'pex2',
'ENSDARG00000075542' => 'zfhx4',
'ENSDARG00000084789' => '5S_rRNA',
'ENSDARG00000084838' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 46 => 'Brain',
(int) 77 => 'Breast',
(int) 98 => 'Colon',
(int) 111 => 'Heart',
(int) 132 => 'Kidney',
(int) 150 => 'Liver',
(int) 172 => 'Lung',
(int) 187 => 'Muscle',
(int) 208 => 'Ovary',
(int) 233 => 'Placenta',
(int) 258 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 81,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000458716' => array(
'start' => '76681280',
'end' => '76708258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-003'
),
'ENST00000517585' => array(
'start' => '76693406',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-008'
),
'ENST00000517683' => array(
'start' => '76681239',
'end' => '76778439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX4-001'
),
'ENST00000518282' => array(
'start' => '76704045',
'end' => '76865923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-005'
),
'ENST00000519536' => array(
'start' => '76778288',
'end' => '76849071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-013'
),
'ENST00000520307' => array(
'start' => '76682527',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-007'
),
'ENST00000521891' => array(
'start' => '76681219',
'end' => '76867285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-002'
),
'ENST00000522409' => array(
'start' => '76849800',
'end' => '76850945',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-012'
),
'ENST00000523625' => array(
'start' => '76778282',
'end' => '76849708',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-011'
),
'ENST00000523809' => array(
'start' => '76693433',
'end' => '76704508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-009'
),
'ENST00000523885' => array(
'start' => '76683781',
'end' => '76704391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-006'
),
'ENST00000524290' => array(
'start' => '76778288',
'end' => '76833626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-010'
),
'ENST00000408102' => array(
'start' => '75786365',
'end' => '75786460',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC016194.1-201'
),
'ENST00000410299' => array(
'start' => '76265543',
'end' => '76265732',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU2-54P-201'
),
'ENST00000518143' => array(
'start' => '76610881',
'end' => '76683278',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-001'
),
'ENST00000521894' => array(
'start' => '76611376',
'end' => '76615321',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-003'
),
'ENST00000522357' => array(
'start' => '76611674',
'end' => '76615028',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-004'
),
'ENST00000522961' => array(
'start' => '76491200',
'end' => '76683156',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-005'
),
'ENST00000523977' => array(
'start' => '76615192',
'end' => '76616441',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-002'
),
'ENST00000524269' => array(
'start' => '76576551',
'end' => '76579345',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-115I9.1-001'
),
'ENST00000518732' => array(
'start' => '76406654',
'end' => '76524356',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01111-001'
),
'ENST00000520744' => array(
'start' => '76603240',
'end' => '76603852',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'MRPL9P1-001'
),
'ENST00000603284' => array(
'start' => '76403998',
'end' => '76405091',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-706J10.2-001'
),
'ENST00000603837' => array(
'start' => '76404058',
'end' => '76407138',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01109-001'
),
'ENST00000357039' => array(
'start' => '76980258',
'end' => '77000226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-001'
),
'ENST00000518986' => array(
'start' => '76983640',
'end' => '76986527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-006'
),
'ENST00000519956' => array(
'start' => '76984170',
'end' => '77001044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-004'
),
'ENST00000520103' => array(
'start' => '76982934',
'end' => '77000947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-003'
),
'ENST00000520203' => array(
'start' => '76987892',
'end' => '77000230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PEX2-005'
),
'ENST00000522527' => array(
'start' => '76982957',
'end' => '77000267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-002'
),
'ENST00000519660' => array(
'start' => '76904591',
'end' => '76913399',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-48D4.2-001'
),
'ENST00000520730' => array(
'start' => '77013751',
'end' => '77014028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HIGD1AP18-001'
),
'ENST00000518706' => array(
'start' => '77399072',
'end' => '77537290',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-001'
),
'ENST00000524014' => array(
'start' => '77450697',
'end' => '77476381',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-002'
),
'ENST00000584629' => array(
'start' => '76966759',
'end' => '76966870',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'hsa-mir-3149.1-201'
),
'ENST00000615451' => array(
'start' => '76733302',
'end' => '76733476',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-217'
),
'ENSMUST00000026284' => array(
'start' => '5218554',
'end' => '5415855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-201'
),
'ENSMUST00000175641' => array(
'start' => '5218546',
'end' => '5331246',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfhx4-004'
),
'ENSMUST00000175866' => array(
'start' => '5218526',
'end' => '5413165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-002'
),
'ENSMUST00000176175' => array(
'start' => '5221505',
'end' => '5242018',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-005'
),
'ENSMUST00000176383' => array(
'start' => '5241672',
'end' => '5415857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-001'
),
'ENSMUST00000059021' => array(
'start' => '5560188',
'end' => '5576239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-201'
),
'ENSMUST00000071280' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-202'
),
'ENSMUST00000164828' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-203'
),
'ENSMUST00000165309' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-204'
),
'ENSMUST00000091364' => array(
'start' => '6615418',
'end' => '6620443',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700008P02Rik-001'
),
'ENSMUST00000091375' => array(
'start' => '3791897',
'end' => '3792295',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps24-ps2-201'
),
'ENSMUST00000104802' => array(
'start' => '4355004',
'end' => '4355096',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23937-201'
),
'ENSMUST00000128815' => array(
'start' => '5177586',
'end' => '5220823',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-001'
),
'ENSMUST00000177440' => array(
'start' => '5178980',
'end' => '5220841',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-002'
),
'ENSMUST00000158662' => array(
'start' => '4567203',
'end' => '4567335',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22944-201'
),
'ENSMUST00000170943' => array(
'start' => '4211716',
'end' => '4212228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm8775-201'
),
'ENSMUST00000176666' => array(
'start' => '5512995',
'end' => '5515333',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930555M17Rik-001'
),
'ENSMUST00000178841' => array(
'start' => '6338882',
'end' => '6338991',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23147-201'
),
'ENSMUST00000104719' => array(
'start' => '4338998',
'end' => '4339116',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s194-201'
),
'ENSMUST00000178831' => array(
'start' => '6343449',
'end' => '6343558',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24954-201'
),
'ENSMUST00000179561' => array(
'start' => '5885595',
'end' => '5885704',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25144-201'
),
'ENSMUST00000179815' => array(
'start' => '5881041',
'end' => '5881150',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25352-201'
),
'ENSMUST00000175001' => array(
'start' => '4305193',
'end' => '4305293',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23976-201'
),
'ENSMUST00000181749' => array(
'start' => '5090276',
'end' => '5094776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm17308-201'
),
'ENSMUST00000182730' => array(
'start' => '6450607',
'end' => '6451588',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5272-001'
),
'ENSMUST00000183632' => array(
'start' => '4799493',
'end' => '4813975',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-002'
),
'ENSMUST00000183944' => array(
'start' => '4798708',
'end' => '4814911',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-001'
),
'ENSMUST00000184429' => array(
'start' => '4797558',
'end' => '4798821',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-003'
),
'ENSDART00000143862' => array(
'start' => '23810493',
'end' => '23822206',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pex2-001'
),
'ENSDART00000112256' => array(
'start' => '23850262',
'end' => '23912668',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-201'
),
'ENSDART00000135846' => array(
'start' => '23850262',
'end' => '23928171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-001'
),
'ENSDART00000120189' => array(
'start' => '23881190',
'end' => '23881307',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.828-201'
),
'ENSDART00000120238' => array(
'start' => '23796469',
'end' => '23796585',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.853-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000253661' => array(
[maximum depth reached]
),
'ENSG00000254300' => array(
[maximum depth reached]
),
'ENSG00000254305' => array(
[maximum depth reached]
),
'ENSG00000270866' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Brain',
(int) 54 => 'Colon',
(int) 55 => 'Muscle'
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000164751' => array(
[maximum depth reached]
),
'ENSG00000253416' => array(
[maximum depth reached]
),
'ENSG00000253952' => array(
[maximum depth reached]
),
'ENSG00000254366' => array(
[maximum depth reached]
),
'ENSG00000266712' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Heart',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Testis',
(int) 86 => 'Ovary',
(int) 87 => 'Adipose',
(int) 88 => 'Breast',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Testis'
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000025255' => array(
[maximum depth reached]
),
'ENSMUSG00000040374' => array(
[maximum depth reached]
),
'ENSMUSG00000069118' => array(
[maximum depth reached]
),
'ENSMUSG00000069125' => array(
[maximum depth reached]
),
'ENSMUSG00000077995' => array(
[maximum depth reached]
),
'ENSMUSG00000086224' => array(
[maximum depth reached]
),
'ENSMUSG00000091223' => array(
[maximum depth reached]
),
'ENSMUSG00000093557' => array(
[maximum depth reached]
),
'ENSMUSG00000093835' => array(
[maximum depth reached]
),
'ENSMUSG00000095818' => array(
[maximum depth reached]
),
'ENSMUSG00000096480' => array(
[maximum depth reached]
),
'ENSMUSG00000096922' => array(
[maximum depth reached]
),
'ENSMUSG00000098226' => array(
[maximum depth reached]
),
'ENSMUSG00000098659' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Brain',
(int) 49 => 'Heart',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Breast',
(int) 74 => 'Liver',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Testis',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Muscle',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Brain',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Testis',
(int) 123 => 'Bladder',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Placenta'
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
'ENSDARG00000062421' => array(
[maximum depth reached]
),
'ENSDARG00000075542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000091656' => 'zinc finger homeobox 4',
'ENSG00000221029' => null,
'ENSG00000222231' => 'RNA, U2 small nuclear 54, pseudogene',
'ENSG00000253661' => 'ZFHX4 antisense RNA 1',
'ENSG00000253681' => null,
'ENSG00000254300' => 'long intergenic non-protein coding RNA 1111',
'ENSG00000254305' => 'mitochondrial ribosomal protein L9 pseudogene 1',
'ENSG00000270866' => null,
'ENSG00000271167' => 'long intergenic non-protein coding RNA 1109',
'ENSG00000164751' => 'peroxisomal biogenesis factor 2',
'ENSG00000253416' => null,
'ENSG00000253952' => 'HIG1 hypoxia inducible domain family, member 1A pseudogene 18',
'ENSG00000254366' => null,
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'TUC338',
'ENSMUSG00000025255' => 'zinc finger homeodomain 4',
'ENSMUSG00000040374' => 'peroxisomal biogenesis factor 2',
'ENSMUSG00000069118' => 'RIKEN cDNA 1700008P02 gene',
'ENSMUSG00000069125' => 'ribosomal protein S24, pseudogene 2',
'ENSMUSG00000077995' => 'predicted gene, 23937',
'ENSMUSG00000086224' => 'RIKEN cDNA 2700069I18 gene',
'ENSMUSG00000089287' => 'predicted gene, 22944',
'ENSMUSG00000091223' => 'predicted gene 8775',
'ENSMUSG00000093557' => 'RIKEN cDNA 4930555M17 gene',
'ENSMUSG00000093835' => 'predicted gene, 23147',
'ENSMUSG00000094830' => 'nuclear encoded rRNA 5S 194',
'ENSMUSG00000095818' => 'predicted gene, 24954',
'ENSMUSG00000096130' => 'predicted gene, 25144',
'ENSMUSG00000096384' => 'predicted gene, 25352',
'ENSMUSG00000096480' => 'predicted gene, 23976',
'ENSMUSG00000096922' => 'predicted gene, 17308',
'ENSMUSG00000098226' => 'predicted gene 5272',
'ENSMUSG00000098659' => 'RIKEN cDNA 1110015O18 gene',
'ENSDARG00000062421' => 'peroxisomal biogenesis factor 2',
'ENSDARG00000075542' => 'zinc finger homeobox 4',
'ENSDARG00000084789' => '5S ribosomal RNA',
'ENSDARG00000084838' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000091656' => 'ZFHX4',
'ENSG00000221029' => 'AC016194.1',
'ENSG00000222231' => 'RNU2-54P',
'ENSG00000253661' => 'ZFHX4-AS1',
'ENSG00000253681' => 'RP11-115I9.1',
'ENSG00000254300' => 'LINC01111',
'ENSG00000254305' => 'MRPL9P1',
'ENSG00000270866' => 'RP11-706J10.2',
'ENSG00000271167' => 'LINC01109',
'ENSG00000164751' => 'PEX2',
'ENSG00000253416' => 'RP11-48D4.2',
'ENSG00000253952' => 'HIGD1AP18',
'ENSG00000254366' => 'RP11-38H17.1',
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'uc_338',
'ENSMUSG00000025255' => 'Zfhx4',
'ENSMUSG00000040374' => 'Pex2',
'ENSMUSG00000069118' => '1700008P02Rik',
'ENSMUSG00000069125' => 'Rps24-ps2',
'ENSMUSG00000077995' => 'Gm23937',
'ENSMUSG00000086224' => '2700069I18Rik',
'ENSMUSG00000089287' => 'Gm22944',
'ENSMUSG00000091223' => 'Gm8775',
'ENSMUSG00000093557' => '4930555M17Rik',
'ENSMUSG00000093835' => 'Gm23147',
'ENSMUSG00000094830' => 'n-R5s194',
'ENSMUSG00000095818' => 'Gm24954',
'ENSMUSG00000096130' => 'Gm25144',
'ENSMUSG00000096384' => 'Gm25352',
'ENSMUSG00000096480' => 'Gm23976',
'ENSMUSG00000096922' => 'Gm17308',
'ENSMUSG00000098226' => 'Gm5272',
'ENSMUSG00000098659' => '1110015O18Rik',
'ENSDARG00000062421' => 'pex2',
'ENSDARG00000075542' => 'zfhx4',
'ENSDARG00000084789' => '5S_rRNA',
'ENSDARG00000084838' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '75659355',
'seq_end' => '76720446',
'region_length' => '1061091',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '76720446',
'seq_end' => '77719456',
'region_length' => '999010',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '77719457',
'seq_end' => '78095221',
'region_length' => '375764',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '3760514',
'seq_end' => '6887688',
'region_length' => '3127174',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0005',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '23501458',
'seq_end' => '24248521',
'region_length' => '747063',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 46 => 'Brain',
(int) 77 => 'Breast',
(int) 98 => 'Colon',
(int) 111 => 'Heart',
(int) 132 => 'Kidney',
(int) 150 => 'Liver',
(int) 172 => 'Lung',
(int) 187 => 'Muscle',
(int) 208 => 'Ovary',
(int) 233 => 'Placenta',
(int) 258 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 81
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000458716' => array(
'start' => '76681280',
'end' => '76708258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-003'
),
'ENST00000517585' => array(
'start' => '76693406',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-008'
),
'ENST00000517683' => array(
'start' => '76681239',
'end' => '76778439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX4-001'
),
'ENST00000518282' => array(
'start' => '76704045',
'end' => '76865923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-005'
),
'ENST00000519536' => array(
'start' => '76778288',
'end' => '76849071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-013'
),
'ENST00000520307' => array(
'start' => '76682527',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-007'
),
'ENST00000521891' => array(
'start' => '76681219',
'end' => '76867285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-002'
),
'ENST00000522409' => array(
'start' => '76849800',
'end' => '76850945',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-012'
),
'ENST00000523625' => array(
'start' => '76778282',
'end' => '76849708',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-011'
),
'ENST00000523809' => array(
'start' => '76693433',
'end' => '76704508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-009'
),
'ENST00000523885' => array(
'start' => '76683781',
'end' => '76704391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-006'
),
'ENST00000524290' => array(
'start' => '76778288',
'end' => '76833626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-010'
),
'ENST00000408102' => array(
'start' => '75786365',
'end' => '75786460',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC016194.1-201'
),
'ENST00000410299' => array(
'start' => '76265543',
'end' => '76265732',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU2-54P-201'
),
'ENST00000518143' => array(
'start' => '76610881',
'end' => '76683278',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-001'
),
'ENST00000521894' => array(
'start' => '76611376',
'end' => '76615321',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-003'
),
'ENST00000522357' => array(
'start' => '76611674',
'end' => '76615028',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-004'
),
'ENST00000522961' => array(
'start' => '76491200',
'end' => '76683156',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-005'
),
'ENST00000523977' => array(
'start' => '76615192',
'end' => '76616441',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-002'
),
'ENST00000524269' => array(
'start' => '76576551',
'end' => '76579345',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-115I9.1-001'
),
'ENST00000518732' => array(
'start' => '76406654',
'end' => '76524356',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01111-001'
),
'ENST00000520744' => array(
'start' => '76603240',
'end' => '76603852',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'MRPL9P1-001'
),
'ENST00000603284' => array(
'start' => '76403998',
'end' => '76405091',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-706J10.2-001'
),
'ENST00000603837' => array(
'start' => '76404058',
'end' => '76407138',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01109-001'
),
'ENST00000357039' => array(
'start' => '76980258',
'end' => '77000226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-001'
),
'ENST00000518986' => array(
'start' => '76983640',
'end' => '76986527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-006'
),
'ENST00000519956' => array(
'start' => '76984170',
'end' => '77001044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-004'
),
'ENST00000520103' => array(
'start' => '76982934',
'end' => '77000947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-003'
),
'ENST00000520203' => array(
'start' => '76987892',
'end' => '77000230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PEX2-005'
),
'ENST00000522527' => array(
'start' => '76982957',
'end' => '77000267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-002'
),
'ENST00000519660' => array(
'start' => '76904591',
'end' => '76913399',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-48D4.2-001'
),
'ENST00000520730' => array(
'start' => '77013751',
'end' => '77014028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HIGD1AP18-001'
),
'ENST00000518706' => array(
'start' => '77399072',
'end' => '77537290',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-001'
),
'ENST00000524014' => array(
'start' => '77450697',
'end' => '77476381',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-002'
),
'ENST00000584629' => array(
'start' => '76966759',
'end' => '76966870',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'hsa-mir-3149.1-201'
),
'ENST00000615451' => array(
'start' => '76733302',
'end' => '76733476',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-217'
),
'ENSMUST00000026284' => array(
'start' => '5218554',
'end' => '5415855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-201'
),
'ENSMUST00000175641' => array(
'start' => '5218546',
'end' => '5331246',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfhx4-004'
),
'ENSMUST00000175866' => array(
'start' => '5218526',
'end' => '5413165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-002'
),
'ENSMUST00000176175' => array(
'start' => '5221505',
'end' => '5242018',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-005'
),
'ENSMUST00000176383' => array(
'start' => '5241672',
'end' => '5415857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-001'
),
'ENSMUST00000059021' => array(
'start' => '5560188',
'end' => '5576239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-201'
),
'ENSMUST00000071280' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-202'
),
'ENSMUST00000164828' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-203'
),
'ENSMUST00000165309' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-204'
),
'ENSMUST00000091364' => array(
'start' => '6615418',
'end' => '6620443',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700008P02Rik-001'
),
'ENSMUST00000091375' => array(
'start' => '3791897',
'end' => '3792295',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps24-ps2-201'
),
'ENSMUST00000104802' => array(
'start' => '4355004',
'end' => '4355096',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23937-201'
),
'ENSMUST00000128815' => array(
'start' => '5177586',
'end' => '5220823',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-001'
),
'ENSMUST00000177440' => array(
'start' => '5178980',
'end' => '5220841',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-002'
),
'ENSMUST00000158662' => array(
'start' => '4567203',
'end' => '4567335',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22944-201'
),
'ENSMUST00000170943' => array(
'start' => '4211716',
'end' => '4212228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm8775-201'
),
'ENSMUST00000176666' => array(
'start' => '5512995',
'end' => '5515333',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930555M17Rik-001'
),
'ENSMUST00000178841' => array(
'start' => '6338882',
'end' => '6338991',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23147-201'
),
'ENSMUST00000104719' => array(
'start' => '4338998',
'end' => '4339116',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s194-201'
),
'ENSMUST00000178831' => array(
'start' => '6343449',
'end' => '6343558',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24954-201'
),
'ENSMUST00000179561' => array(
'start' => '5885595',
'end' => '5885704',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25144-201'
),
'ENSMUST00000179815' => array(
'start' => '5881041',
'end' => '5881150',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25352-201'
),
'ENSMUST00000175001' => array(
'start' => '4305193',
'end' => '4305293',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23976-201'
),
'ENSMUST00000181749' => array(
'start' => '5090276',
'end' => '5094776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm17308-201'
),
'ENSMUST00000182730' => array(
'start' => '6450607',
'end' => '6451588',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5272-001'
),
'ENSMUST00000183632' => array(
'start' => '4799493',
'end' => '4813975',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-002'
),
'ENSMUST00000183944' => array(
'start' => '4798708',
'end' => '4814911',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-001'
),
'ENSMUST00000184429' => array(
'start' => '4797558',
'end' => '4798821',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-003'
),
'ENSDART00000143862' => array(
'start' => '23810493',
'end' => '23822206',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pex2-001'
),
'ENSDART00000112256' => array(
'start' => '23850262',
'end' => '23912668',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-201'
),
'ENSDART00000135846' => array(
'start' => '23850262',
'end' => '23928171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-001'
),
'ENSDART00000120189' => array(
'start' => '23881190',
'end' => '23881307',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.828-201'
),
'ENSDART00000120238' => array(
'start' => '23796469',
'end' => '23796585',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.853-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000253661' => array(
[maximum depth reached]
),
'ENSG00000254300' => array(
[maximum depth reached]
),
'ENSG00000254305' => array(
[maximum depth reached]
),
'ENSG00000270866' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Brain',
(int) 54 => 'Colon',
(int) 55 => 'Muscle'
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000164751' => array(
[maximum depth reached]
),
'ENSG00000253416' => array(
[maximum depth reached]
),
'ENSG00000253952' => array(
[maximum depth reached]
),
'ENSG00000254366' => array(
[maximum depth reached]
),
'ENSG00000266712' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Heart',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Testis',
(int) 86 => 'Ovary',
(int) 87 => 'Adipose',
(int) 88 => 'Breast',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Testis'
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000025255' => array(
[maximum depth reached]
),
'ENSMUSG00000040374' => array(
[maximum depth reached]
),
'ENSMUSG00000069118' => array(
[maximum depth reached]
),
'ENSMUSG00000069125' => array(
[maximum depth reached]
),
'ENSMUSG00000077995' => array(
[maximum depth reached]
),
'ENSMUSG00000086224' => array(
[maximum depth reached]
),
'ENSMUSG00000091223' => array(
[maximum depth reached]
),
'ENSMUSG00000093557' => array(
[maximum depth reached]
),
'ENSMUSG00000093835' => array(
[maximum depth reached]
),
'ENSMUSG00000095818' => array(
[maximum depth reached]
),
'ENSMUSG00000096480' => array(
[maximum depth reached]
),
'ENSMUSG00000096922' => array(
[maximum depth reached]
),
'ENSMUSG00000098226' => array(
[maximum depth reached]
),
'ENSMUSG00000098659' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Brain',
(int) 49 => 'Heart',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Breast',
(int) 74 => 'Liver',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Testis',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Muscle',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Brain',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Testis',
(int) 123 => 'Bladder',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Placenta'
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
'ENSDARG00000062421' => array(
[maximum depth reached]
),
'ENSDARG00000075542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '77719457',
'seq_end' => '78095221',
'region_length' => '375764',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
)
$gene_el = array(
'ENST00000584629' => array(
'Brain' => array(
'average_FPKM' => '0.897',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.486',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.461',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000266712'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.897',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.486',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.461',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000584629'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000091656' => 'zinc finger homeobox 4',
'ENSG00000221029' => null,
'ENSG00000222231' => 'RNA, U2 small nuclear 54, pseudogene',
'ENSG00000253661' => 'ZFHX4 antisense RNA 1',
'ENSG00000253681' => null,
'ENSG00000254300' => 'long intergenic non-protein coding RNA 1111',
'ENSG00000254305' => 'mitochondrial ribosomal protein L9 pseudogene 1',
'ENSG00000270866' => null,
'ENSG00000271167' => 'long intergenic non-protein coding RNA 1109',
'ENSG00000164751' => 'peroxisomal biogenesis factor 2',
'ENSG00000253416' => null,
'ENSG00000253952' => 'HIG1 hypoxia inducible domain family, member 1A pseudogene 18',
'ENSG00000254366' => null,
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'TUC338',
'ENSMUSG00000025255' => 'zinc finger homeodomain 4',
'ENSMUSG00000040374' => 'peroxisomal biogenesis factor 2',
'ENSMUSG00000069118' => 'RIKEN cDNA 1700008P02 gene',
'ENSMUSG00000069125' => 'ribosomal protein S24, pseudogene 2',
'ENSMUSG00000077995' => 'predicted gene, 23937',
'ENSMUSG00000086224' => 'RIKEN cDNA 2700069I18 gene',
'ENSMUSG00000089287' => 'predicted gene, 22944',
'ENSMUSG00000091223' => 'predicted gene 8775',
'ENSMUSG00000093557' => 'RIKEN cDNA 4930555M17 gene',
'ENSMUSG00000093835' => 'predicted gene, 23147',
'ENSMUSG00000094830' => 'nuclear encoded rRNA 5S 194',
'ENSMUSG00000095818' => 'predicted gene, 24954',
'ENSMUSG00000096130' => 'predicted gene, 25144',
'ENSMUSG00000096384' => 'predicted gene, 25352',
'ENSMUSG00000096480' => 'predicted gene, 23976',
'ENSMUSG00000096922' => 'predicted gene, 17308',
'ENSMUSG00000098226' => 'predicted gene 5272',
'ENSMUSG00000098659' => 'RIKEN cDNA 1110015O18 gene',
'ENSDARG00000062421' => 'peroxisomal biogenesis factor 2',
'ENSDARG00000075542' => 'zinc finger homeobox 4',
'ENSDARG00000084789' => '5S ribosomal RNA',
'ENSDARG00000084838' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000091656' => 'ZFHX4',
'ENSG00000221029' => 'AC016194.1',
'ENSG00000222231' => 'RNU2-54P',
'ENSG00000253661' => 'ZFHX4-AS1',
'ENSG00000253681' => 'RP11-115I9.1',
'ENSG00000254300' => 'LINC01111',
'ENSG00000254305' => 'MRPL9P1',
'ENSG00000270866' => 'RP11-706J10.2',
'ENSG00000271167' => 'LINC01109',
'ENSG00000164751' => 'PEX2',
'ENSG00000253416' => 'RP11-48D4.2',
'ENSG00000253952' => 'HIGD1AP18',
'ENSG00000254366' => 'RP11-38H17.1',
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'uc_338',
'ENSMUSG00000025255' => 'Zfhx4',
'ENSMUSG00000040374' => 'Pex2',
'ENSMUSG00000069118' => '1700008P02Rik',
'ENSMUSG00000069125' => 'Rps24-ps2',
'ENSMUSG00000077995' => 'Gm23937',
'ENSMUSG00000086224' => '2700069I18Rik',
'ENSMUSG00000089287' => 'Gm22944',
'ENSMUSG00000091223' => 'Gm8775',
'ENSMUSG00000093557' => '4930555M17Rik',
'ENSMUSG00000093835' => 'Gm23147',
'ENSMUSG00000094830' => 'n-R5s194',
'ENSMUSG00000095818' => 'Gm24954',
'ENSMUSG00000096130' => 'Gm25144',
'ENSMUSG00000096384' => 'Gm25352',
'ENSMUSG00000096480' => 'Gm23976',
'ENSMUSG00000096922' => 'Gm17308',
'ENSMUSG00000098226' => 'Gm5272',
'ENSMUSG00000098659' => '1110015O18Rik',
'ENSDARG00000062421' => 'pex2',
'ENSDARG00000075542' => 'zfhx4',
'ENSDARG00000084789' => '5S_rRNA',
'ENSDARG00000084838' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 46 => 'Brain',
(int) 77 => 'Breast',
(int) 98 => 'Colon',
(int) 111 => 'Heart',
(int) 132 => 'Kidney',
(int) 150 => 'Liver',
(int) 172 => 'Lung',
(int) 187 => 'Muscle',
(int) 208 => 'Ovary',
(int) 233 => 'Placenta',
(int) 258 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 81,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000458716' => array(
'start' => '76681280',
'end' => '76708258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-003'
),
'ENST00000517585' => array(
'start' => '76693406',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-008'
),
'ENST00000517683' => array(
'start' => '76681239',
'end' => '76778439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX4-001'
),
'ENST00000518282' => array(
'start' => '76704045',
'end' => '76865923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-005'
),
'ENST00000519536' => array(
'start' => '76778288',
'end' => '76849071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-013'
),
'ENST00000520307' => array(
'start' => '76682527',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-007'
),
'ENST00000521891' => array(
'start' => '76681219',
'end' => '76867285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-002'
),
'ENST00000522409' => array(
'start' => '76849800',
'end' => '76850945',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-012'
),
'ENST00000523625' => array(
'start' => '76778282',
'end' => '76849708',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-011'
),
'ENST00000523809' => array(
'start' => '76693433',
'end' => '76704508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-009'
),
'ENST00000523885' => array(
'start' => '76683781',
'end' => '76704391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-006'
),
'ENST00000524290' => array(
'start' => '76778288',
'end' => '76833626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-010'
),
'ENST00000408102' => array(
'start' => '75786365',
'end' => '75786460',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC016194.1-201'
),
'ENST00000410299' => array(
'start' => '76265543',
'end' => '76265732',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU2-54P-201'
),
'ENST00000518143' => array(
'start' => '76610881',
'end' => '76683278',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-001'
),
'ENST00000521894' => array(
'start' => '76611376',
'end' => '76615321',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-003'
),
'ENST00000522357' => array(
'start' => '76611674',
'end' => '76615028',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-004'
),
'ENST00000522961' => array(
'start' => '76491200',
'end' => '76683156',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-005'
),
'ENST00000523977' => array(
'start' => '76615192',
'end' => '76616441',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-002'
),
'ENST00000524269' => array(
'start' => '76576551',
'end' => '76579345',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-115I9.1-001'
),
'ENST00000518732' => array(
'start' => '76406654',
'end' => '76524356',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01111-001'
),
'ENST00000520744' => array(
'start' => '76603240',
'end' => '76603852',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'MRPL9P1-001'
),
'ENST00000603284' => array(
'start' => '76403998',
'end' => '76405091',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-706J10.2-001'
),
'ENST00000603837' => array(
'start' => '76404058',
'end' => '76407138',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01109-001'
),
'ENST00000357039' => array(
'start' => '76980258',
'end' => '77000226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-001'
),
'ENST00000518986' => array(
'start' => '76983640',
'end' => '76986527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-006'
),
'ENST00000519956' => array(
'start' => '76984170',
'end' => '77001044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-004'
),
'ENST00000520103' => array(
'start' => '76982934',
'end' => '77000947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-003'
),
'ENST00000520203' => array(
'start' => '76987892',
'end' => '77000230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PEX2-005'
),
'ENST00000522527' => array(
'start' => '76982957',
'end' => '77000267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-002'
),
'ENST00000519660' => array(
'start' => '76904591',
'end' => '76913399',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-48D4.2-001'
),
'ENST00000520730' => array(
'start' => '77013751',
'end' => '77014028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HIGD1AP18-001'
),
'ENST00000518706' => array(
'start' => '77399072',
'end' => '77537290',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-001'
),
'ENST00000524014' => array(
'start' => '77450697',
'end' => '77476381',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-002'
),
'ENST00000584629' => array(
'start' => '76966759',
'end' => '76966870',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'hsa-mir-3149.1-201'
),
'ENST00000615451' => array(
'start' => '76733302',
'end' => '76733476',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-217'
),
'ENSMUST00000026284' => array(
'start' => '5218554',
'end' => '5415855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-201'
),
'ENSMUST00000175641' => array(
'start' => '5218546',
'end' => '5331246',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfhx4-004'
),
'ENSMUST00000175866' => array(
'start' => '5218526',
'end' => '5413165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-002'
),
'ENSMUST00000176175' => array(
'start' => '5221505',
'end' => '5242018',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-005'
),
'ENSMUST00000176383' => array(
'start' => '5241672',
'end' => '5415857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-001'
),
'ENSMUST00000059021' => array(
'start' => '5560188',
'end' => '5576239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-201'
),
'ENSMUST00000071280' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-202'
),
'ENSMUST00000164828' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-203'
),
'ENSMUST00000165309' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-204'
),
'ENSMUST00000091364' => array(
'start' => '6615418',
'end' => '6620443',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700008P02Rik-001'
),
'ENSMUST00000091375' => array(
'start' => '3791897',
'end' => '3792295',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps24-ps2-201'
),
'ENSMUST00000104802' => array(
'start' => '4355004',
'end' => '4355096',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23937-201'
),
'ENSMUST00000128815' => array(
'start' => '5177586',
'end' => '5220823',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-001'
),
'ENSMUST00000177440' => array(
'start' => '5178980',
'end' => '5220841',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-002'
),
'ENSMUST00000158662' => array(
'start' => '4567203',
'end' => '4567335',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22944-201'
),
'ENSMUST00000170943' => array(
'start' => '4211716',
'end' => '4212228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm8775-201'
),
'ENSMUST00000176666' => array(
'start' => '5512995',
'end' => '5515333',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930555M17Rik-001'
),
'ENSMUST00000178841' => array(
'start' => '6338882',
'end' => '6338991',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23147-201'
),
'ENSMUST00000104719' => array(
'start' => '4338998',
'end' => '4339116',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s194-201'
),
'ENSMUST00000178831' => array(
'start' => '6343449',
'end' => '6343558',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24954-201'
),
'ENSMUST00000179561' => array(
'start' => '5885595',
'end' => '5885704',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25144-201'
),
'ENSMUST00000179815' => array(
'start' => '5881041',
'end' => '5881150',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25352-201'
),
'ENSMUST00000175001' => array(
'start' => '4305193',
'end' => '4305293',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23976-201'
),
'ENSMUST00000181749' => array(
'start' => '5090276',
'end' => '5094776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm17308-201'
),
'ENSMUST00000182730' => array(
'start' => '6450607',
'end' => '6451588',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5272-001'
),
'ENSMUST00000183632' => array(
'start' => '4799493',
'end' => '4813975',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-002'
),
'ENSMUST00000183944' => array(
'start' => '4798708',
'end' => '4814911',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-001'
),
'ENSMUST00000184429' => array(
'start' => '4797558',
'end' => '4798821',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-003'
),
'ENSDART00000143862' => array(
'start' => '23810493',
'end' => '23822206',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pex2-001'
),
'ENSDART00000112256' => array(
'start' => '23850262',
'end' => '23912668',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-201'
),
'ENSDART00000135846' => array(
'start' => '23850262',
'end' => '23928171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-001'
),
'ENSDART00000120189' => array(
'start' => '23881190',
'end' => '23881307',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.828-201'
),
'ENSDART00000120238' => array(
'start' => '23796469',
'end' => '23796585',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.853-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000253661' => array(
[maximum depth reached]
),
'ENSG00000254300' => array(
[maximum depth reached]
),
'ENSG00000254305' => array(
[maximum depth reached]
),
'ENSG00000270866' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Brain',
(int) 54 => 'Colon',
(int) 55 => 'Muscle'
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000164751' => array(
[maximum depth reached]
),
'ENSG00000253416' => array(
[maximum depth reached]
),
'ENSG00000253952' => array(
[maximum depth reached]
),
'ENSG00000254366' => array(
[maximum depth reached]
),
'ENSG00000266712' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Heart',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Testis',
(int) 86 => 'Ovary',
(int) 87 => 'Adipose',
(int) 88 => 'Breast',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Testis'
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000025255' => array(
[maximum depth reached]
),
'ENSMUSG00000040374' => array(
[maximum depth reached]
),
'ENSMUSG00000069118' => array(
[maximum depth reached]
),
'ENSMUSG00000069125' => array(
[maximum depth reached]
),
'ENSMUSG00000077995' => array(
[maximum depth reached]
),
'ENSMUSG00000086224' => array(
[maximum depth reached]
),
'ENSMUSG00000091223' => array(
[maximum depth reached]
),
'ENSMUSG00000093557' => array(
[maximum depth reached]
),
'ENSMUSG00000093835' => array(
[maximum depth reached]
),
'ENSMUSG00000095818' => array(
[maximum depth reached]
),
'ENSMUSG00000096480' => array(
[maximum depth reached]
),
'ENSMUSG00000096922' => array(
[maximum depth reached]
),
'ENSMUSG00000098226' => array(
[maximum depth reached]
),
'ENSMUSG00000098659' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Brain',
(int) 49 => 'Heart',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Breast',
(int) 74 => 'Liver',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Testis',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Muscle',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Brain',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Testis',
(int) 123 => 'Bladder',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Placenta'
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
'ENSDARG00000062421' => array(
[maximum depth reached]
),
'ENSDARG00000075542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000091656' => 'zinc finger homeobox 4',
'ENSG00000221029' => null,
'ENSG00000222231' => 'RNA, U2 small nuclear 54, pseudogene',
'ENSG00000253661' => 'ZFHX4 antisense RNA 1',
'ENSG00000253681' => null,
'ENSG00000254300' => 'long intergenic non-protein coding RNA 1111',
'ENSG00000254305' => 'mitochondrial ribosomal protein L9 pseudogene 1',
'ENSG00000270866' => null,
'ENSG00000271167' => 'long intergenic non-protein coding RNA 1109',
'ENSG00000164751' => 'peroxisomal biogenesis factor 2',
'ENSG00000253416' => null,
'ENSG00000253952' => 'HIG1 hypoxia inducible domain family, member 1A pseudogene 18',
'ENSG00000254366' => null,
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'TUC338',
'ENSMUSG00000025255' => 'zinc finger homeodomain 4',
'ENSMUSG00000040374' => 'peroxisomal biogenesis factor 2',
'ENSMUSG00000069118' => 'RIKEN cDNA 1700008P02 gene',
'ENSMUSG00000069125' => 'ribosomal protein S24, pseudogene 2',
'ENSMUSG00000077995' => 'predicted gene, 23937',
'ENSMUSG00000086224' => 'RIKEN cDNA 2700069I18 gene',
'ENSMUSG00000089287' => 'predicted gene, 22944',
'ENSMUSG00000091223' => 'predicted gene 8775',
'ENSMUSG00000093557' => 'RIKEN cDNA 4930555M17 gene',
'ENSMUSG00000093835' => 'predicted gene, 23147',
'ENSMUSG00000094830' => 'nuclear encoded rRNA 5S 194',
'ENSMUSG00000095818' => 'predicted gene, 24954',
'ENSMUSG00000096130' => 'predicted gene, 25144',
'ENSMUSG00000096384' => 'predicted gene, 25352',
'ENSMUSG00000096480' => 'predicted gene, 23976',
'ENSMUSG00000096922' => 'predicted gene, 17308',
'ENSMUSG00000098226' => 'predicted gene 5272',
'ENSMUSG00000098659' => 'RIKEN cDNA 1110015O18 gene',
'ENSDARG00000062421' => 'peroxisomal biogenesis factor 2',
'ENSDARG00000075542' => 'zinc finger homeobox 4',
'ENSDARG00000084789' => '5S ribosomal RNA',
'ENSDARG00000084838' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000091656' => 'ZFHX4',
'ENSG00000221029' => 'AC016194.1',
'ENSG00000222231' => 'RNU2-54P',
'ENSG00000253661' => 'ZFHX4-AS1',
'ENSG00000253681' => 'RP11-115I9.1',
'ENSG00000254300' => 'LINC01111',
'ENSG00000254305' => 'MRPL9P1',
'ENSG00000270866' => 'RP11-706J10.2',
'ENSG00000271167' => 'LINC01109',
'ENSG00000164751' => 'PEX2',
'ENSG00000253416' => 'RP11-48D4.2',
'ENSG00000253952' => 'HIGD1AP18',
'ENSG00000254366' => 'RP11-38H17.1',
'ENSG00000266712' => 'hsa-mir-3149',
'ENSG00000276673' => 'uc_338',
'ENSMUSG00000025255' => 'Zfhx4',
'ENSMUSG00000040374' => 'Pex2',
'ENSMUSG00000069118' => '1700008P02Rik',
'ENSMUSG00000069125' => 'Rps24-ps2',
'ENSMUSG00000077995' => 'Gm23937',
'ENSMUSG00000086224' => '2700069I18Rik',
'ENSMUSG00000089287' => 'Gm22944',
'ENSMUSG00000091223' => 'Gm8775',
'ENSMUSG00000093557' => '4930555M17Rik',
'ENSMUSG00000093835' => 'Gm23147',
'ENSMUSG00000094830' => 'n-R5s194',
'ENSMUSG00000095818' => 'Gm24954',
'ENSMUSG00000096130' => 'Gm25144',
'ENSMUSG00000096384' => 'Gm25352',
'ENSMUSG00000096480' => 'Gm23976',
'ENSMUSG00000096922' => 'Gm17308',
'ENSMUSG00000098226' => 'Gm5272',
'ENSMUSG00000098659' => '1110015O18Rik',
'ENSDARG00000062421' => 'pex2',
'ENSDARG00000075542' => 'zfhx4',
'ENSDARG00000084789' => '5S_rRNA',
'ENSDARG00000084838' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '75659355',
'seq_end' => '76720446',
'region_length' => '1061091',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0002',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '76720446',
'seq_end' => '77719456',
'region_length' => '999010',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '77719457',
'seq_end' => '78095221',
'region_length' => '375764',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0004',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '3760514',
'seq_end' => '6887688',
'region_length' => '3127174',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0005',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '23501458',
'seq_end' => '24248521',
'region_length' => '747063',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 46 => 'Brain',
(int) 77 => 'Breast',
(int) 98 => 'Colon',
(int) 111 => 'Heart',
(int) 132 => 'Kidney',
(int) 150 => 'Liver',
(int) 172 => 'Lung',
(int) 187 => 'Muscle',
(int) 208 => 'Ovary',
(int) 233 => 'Placenta',
(int) 258 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 81
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000458716' => array(
'start' => '76681280',
'end' => '76708258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-003'
),
'ENST00000517585' => array(
'start' => '76693406',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-008'
),
'ENST00000517683' => array(
'start' => '76681239',
'end' => '76778439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZFHX4-001'
),
'ENST00000518282' => array(
'start' => '76704045',
'end' => '76865923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-005'
),
'ENST00000519536' => array(
'start' => '76778288',
'end' => '76849071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-013'
),
'ENST00000520307' => array(
'start' => '76682527',
'end' => '76704554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-007'
),
'ENST00000521891' => array(
'start' => '76681219',
'end' => '76867285',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-002'
),
'ENST00000522409' => array(
'start' => '76849800',
'end' => '76850945',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-012'
),
'ENST00000523625' => array(
'start' => '76778282',
'end' => '76849708',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZFHX4-011'
),
'ENST00000523809' => array(
'start' => '76693433',
'end' => '76704508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-009'
),
'ENST00000523885' => array(
'start' => '76683781',
'end' => '76704391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZFHX4-006'
),
'ENST00000524290' => array(
'start' => '76778288',
'end' => '76833626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZFHX4-010'
),
'ENST00000408102' => array(
'start' => '75786365',
'end' => '75786460',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC016194.1-201'
),
'ENST00000410299' => array(
'start' => '76265543',
'end' => '76265732',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU2-54P-201'
),
'ENST00000518143' => array(
'start' => '76610881',
'end' => '76683278',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-001'
),
'ENST00000521894' => array(
'start' => '76611376',
'end' => '76615321',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-003'
),
'ENST00000522357' => array(
'start' => '76611674',
'end' => '76615028',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-004'
),
'ENST00000522961' => array(
'start' => '76491200',
'end' => '76683156',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-005'
),
'ENST00000523977' => array(
'start' => '76615192',
'end' => '76616441',
'transcript_biotype' => 'antisense',
'transcript_name' => 'ZFHX4-AS1-002'
),
'ENST00000524269' => array(
'start' => '76576551',
'end' => '76579345',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-115I9.1-001'
),
'ENST00000518732' => array(
'start' => '76406654',
'end' => '76524356',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01111-001'
),
'ENST00000520744' => array(
'start' => '76603240',
'end' => '76603852',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'MRPL9P1-001'
),
'ENST00000603284' => array(
'start' => '76403998',
'end' => '76405091',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-706J10.2-001'
),
'ENST00000603837' => array(
'start' => '76404058',
'end' => '76407138',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01109-001'
),
'ENST00000357039' => array(
'start' => '76980258',
'end' => '77000226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-001'
),
'ENST00000518986' => array(
'start' => '76983640',
'end' => '76986527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-006'
),
'ENST00000519956' => array(
'start' => '76984170',
'end' => '77001044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-004'
),
'ENST00000520103' => array(
'start' => '76982934',
'end' => '77000947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-003'
),
'ENST00000520203' => array(
'start' => '76987892',
'end' => '77000230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PEX2-005'
),
'ENST00000522527' => array(
'start' => '76982957',
'end' => '77000267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PEX2-002'
),
'ENST00000519660' => array(
'start' => '76904591',
'end' => '76913399',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-48D4.2-001'
),
'ENST00000520730' => array(
'start' => '77013751',
'end' => '77014028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HIGD1AP18-001'
),
'ENST00000518706' => array(
'start' => '77399072',
'end' => '77537290',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-001'
),
'ENST00000524014' => array(
'start' => '77450697',
'end' => '77476381',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-38H17.1-002'
),
'ENST00000584629' => array(
'start' => '76966759',
'end' => '76966870',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'hsa-mir-3149.1-201'
),
'ENST00000615451' => array(
'start' => '76733302',
'end' => '76733476',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'uc_338.1-217'
),
'ENSMUST00000026284' => array(
'start' => '5218554',
'end' => '5415855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-201'
),
'ENSMUST00000175641' => array(
'start' => '5218546',
'end' => '5331246',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfhx4-004'
),
'ENSMUST00000175866' => array(
'start' => '5218526',
'end' => '5413165',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-002'
),
'ENSMUST00000176175' => array(
'start' => '5221505',
'end' => '5242018',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-005'
),
'ENSMUST00000176383' => array(
'start' => '5241672',
'end' => '5415857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfhx4-001'
),
'ENSMUST00000059021' => array(
'start' => '5560188',
'end' => '5576239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-201'
),
'ENSMUST00000071280' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-202'
),
'ENSMUST00000164828' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-203'
),
'ENSMUST00000165309' => array(
'start' => '5560188',
'end' => '5576150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pex2-204'
),
'ENSMUST00000091364' => array(
'start' => '6615418',
'end' => '6620443',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700008P02Rik-001'
),
'ENSMUST00000091375' => array(
'start' => '3791897',
'end' => '3792295',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps24-ps2-201'
),
'ENSMUST00000104802' => array(
'start' => '4355004',
'end' => '4355096',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23937-201'
),
'ENSMUST00000128815' => array(
'start' => '5177586',
'end' => '5220823',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-001'
),
'ENSMUST00000177440' => array(
'start' => '5178980',
'end' => '5220841',
'transcript_biotype' => 'antisense',
'transcript_name' => '2700069I18Rik-002'
),
'ENSMUST00000158662' => array(
'start' => '4567203',
'end' => '4567335',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22944-201'
),
'ENSMUST00000170943' => array(
'start' => '4211716',
'end' => '4212228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm8775-201'
),
'ENSMUST00000176666' => array(
'start' => '5512995',
'end' => '5515333',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930555M17Rik-001'
),
'ENSMUST00000178841' => array(
'start' => '6338882',
'end' => '6338991',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23147-201'
),
'ENSMUST00000104719' => array(
'start' => '4338998',
'end' => '4339116',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s194-201'
),
'ENSMUST00000178831' => array(
'start' => '6343449',
'end' => '6343558',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24954-201'
),
'ENSMUST00000179561' => array(
'start' => '5885595',
'end' => '5885704',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25144-201'
),
'ENSMUST00000179815' => array(
'start' => '5881041',
'end' => '5881150',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25352-201'
),
'ENSMUST00000175001' => array(
'start' => '4305193',
'end' => '4305293',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23976-201'
),
'ENSMUST00000181749' => array(
'start' => '5090276',
'end' => '5094776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm17308-201'
),
'ENSMUST00000182730' => array(
'start' => '6450607',
'end' => '6451588',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5272-001'
),
'ENSMUST00000183632' => array(
'start' => '4799493',
'end' => '4813975',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-002'
),
'ENSMUST00000183944' => array(
'start' => '4798708',
'end' => '4814911',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-001'
),
'ENSMUST00000184429' => array(
'start' => '4797558',
'end' => '4798821',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1110015O18Rik-003'
),
'ENSDART00000143862' => array(
'start' => '23810493',
'end' => '23822206',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pex2-001'
),
'ENSDART00000112256' => array(
'start' => '23850262',
'end' => '23912668',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-201'
),
'ENSDART00000135846' => array(
'start' => '23850262',
'end' => '23928171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'zfhx4-001'
),
'ENSDART00000120189' => array(
'start' => '23881190',
'end' => '23881307',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.828-201'
),
'ENSDART00000120238' => array(
'start' => '23796469',
'end' => '23796585',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.853-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P3_0001' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000253661' => array(
[maximum depth reached]
),
'ENSG00000254300' => array(
[maximum depth reached]
),
'ENSG00000254305' => array(
[maximum depth reached]
),
'ENSG00000270866' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Muscle',
(int) 38 => 'Ovary',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Brain',
(int) 54 => 'Colon',
(int) 55 => 'Muscle'
)
),
'CIL_0007P3_0002' => array(
'genes_in_region' => array(
'ENSG00000091656' => array(
[maximum depth reached]
),
'ENSG00000164751' => array(
[maximum depth reached]
),
'ENSG00000253416' => array(
[maximum depth reached]
),
'ENSG00000253952' => array(
[maximum depth reached]
),
'ENSG00000254366' => array(
[maximum depth reached]
),
'ENSG00000266712' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Placenta',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Placenta',
(int) 30 => 'Lung',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Heart',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Testis',
(int) 86 => 'Ovary',
(int) 87 => 'Adipose',
(int) 88 => 'Breast',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Testis'
)
),
'CIL_0007P3_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000025255' => array(
[maximum depth reached]
),
'ENSMUSG00000040374' => array(
[maximum depth reached]
),
'ENSMUSG00000069118' => array(
[maximum depth reached]
),
'ENSMUSG00000069125' => array(
[maximum depth reached]
),
'ENSMUSG00000077995' => array(
[maximum depth reached]
),
'ENSMUSG00000086224' => array(
[maximum depth reached]
),
'ENSMUSG00000091223' => array(
[maximum depth reached]
),
'ENSMUSG00000093557' => array(
[maximum depth reached]
),
'ENSMUSG00000093835' => array(
[maximum depth reached]
),
'ENSMUSG00000095818' => array(
[maximum depth reached]
),
'ENSMUSG00000096480' => array(
[maximum depth reached]
),
'ENSMUSG00000096922' => array(
[maximum depth reached]
),
'ENSMUSG00000098226' => array(
[maximum depth reached]
),
'ENSMUSG00000098659' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Heart',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Testis',
(int) 48 => 'Brain',
(int) 49 => 'Heart',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Placenta',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Breast',
(int) 74 => 'Liver',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Heart',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Testis',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Muscle',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Brain',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Testis',
(int) 109 => 'Brain',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Testis',
(int) 123 => 'Bladder',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Placenta'
)
),
'CIL_0007P3_0005' => array(
'genes_in_region' => array(
'ENSDARG00000062421' => array(
[maximum depth reached]
),
'ENSDARG00000075542' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P3_0003',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '77719457',
'seq_end' => '78095221',
'region_length' => '375764',
'region_type' => 'UCNEbase',
'el_id' => 'ZFHX4'
)
)
$gene_el = array(
'ENST00000584629' => array(
'Brain' => array(
'average_FPKM' => '0.897',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.486',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.461',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000266712'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.897',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.486',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.461',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000584629'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| ZFHX4 |
UCNEbase |
9606 |
8:77719457-78095221  |
| Gene | Transcript | Position | Biotype |
|---|
(ZFHX4)