C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007Q1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs852 VISTA 9606 9:13450116-14051399
GeneTranscriptPositionBiotype
ENSG00000205636 (LINC00583)
long intergenic non-protein coding RNA 583 		ENST00000381010 (LINC00583-001) 13927971-13945610 lincRNA
ENSG00000223568 (RPL3P11)
ribosomal protein L3 pseudogene 11 		ENST00000434028 (RPL3P11-001) 14040716-14041861 processed_pseudogene
ENSG00000226197 (RP11-536O18.1)
 ENST00000428006 (RP11-536O18.1-001) 13446491-13487511 lincRNA
ENSG00000229268 (PES1P2)
pescadillo ribosomal biogenesis factor 1 pseudogene 2 		ENST00000449745 (PES1P2-001) 13986175-13987909 processed_pseudogene
ENSG00000235533 (RP11-284P20.3)
 ENST00000442260 (RP11-284P20.3-001) 14025971-14030115 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007Q1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs852 VISTA 10090 4:81660417-82261865
GeneTranscriptPositionBiotype
ENSMUSG00000085022 (Gm5860)
predicted gene 5860 		ENSMUST00000137810 (Gm5860-001) 82065431-82102808 lincRNA
ENSMUST00000151038 (Gm5860-003) 82065873-82067775 lincRNA
ENSMUST00000161588 (Gm5860-002) 82065957-82102673 lincRNA
ENSMUSG00000087110 (Gm11264)
predicted gene 11264 		ENSMUST00000143755 (Gm11264-001) 82033312-82065890 lincRNA
ENSMUSG00000087540 (Gm11412)
predicted gene 11412 		ENSMUST00000144875 (Gm11412-001) 81743146-81746701 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Q1_0001ENSG00000205636ENST00000381010ENSG00000223568ENST00000434028ENSG00000226197ENST00000428006ENSG00000229268ENST00000449745ENSG00000235533ENST00000442260CIL_0007Q1_0002ENSMUSG00000085022ENSMUST00000137810ENSMUST00000151038ENSMUST00000161588ENSMUSG00000087110ENSMUST00000143755ENSMUSG00000087540ENSMUST00000144875
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007Q1_0001ENSG00000205636ENST00000381010ENSG00000223568ENST00000434028ENSG00000226197ENST00000428006ENSG00000229268ENST00000449745ENSG00000235533ENST00000442260CIL_0007Q1_0002ENSMUSG00000085022ENSMUST00000137810ENSMUST00000151038ENSMUST00000161588ENSMUSG00000087110ENSMUST00000143755ENSMUSG00000087540ENSMUST00000144875
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205636 ENST00000381010 N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223568 ENST00000434028 N/A 0.028±0.00 N/A 0.014±0.00 N/A 0.039±0.00 N/A N/A 0.012±0.00 N/A 0.012±0.00 N/A N/A 0.025±0.00
ENSG00000226197 ENST00000428006 0.798±0.00 6.617±0.00 N/A N/A 1.918±1.70 1.210±0.00 1.094±0.00 0.094±0.00 N/A 0.355±0.00 0.337±0.00 0.250±0.17 2.197±0.65 0.857±0.00
ENSG00000229268 ENST00000449745 0.010±0.00 N/A 0.095±0.00 0.033±0.00 0.011±0.00 0.031±0.00 0.049±0.00 0.022±0.00 N/A N/A N/A N/A 0.027±0.00 0.065±0.03
ENSG00000235533 ENST00000442260 N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000085022 ENSMUST00000137810 0.043±0.00 0.163±0.06 0.024±0.01 0.124±0.10 0.230±0.11 N/A 0.594±0.05 0.044±0.00 0.040±0.02 0.056±0.00 2.957±0.72 0.128±0.09 0.095±0.12 0.591±0.29
ENSMUST00000151038 0.184±0.02 0.123±0.00 0.009±0.00 0.025±0.01 0.077±0.04 N/A 0.497±0.04 0.094±0.04 0.021±0.01 0.033±0.00 0.975±0.16 0.146±0.12 0.013±0.01 0.005±0.00
ENSMUST00000161588 N/A N/A N/A N/A N/A N/A N/A 0.257±0.04 N/A 0.373±0.00 N/A N/A N/A N/A
ENSMUSG00000087110 ENSMUST00000143755 N/A N/A 0.010±0.01 N/A N/A N/A 0.089±0.00 N/A 0.003±0.00 N/A N/A N/A N/A 0.053±0.04
ENSMUSG00000087540 ENSMUST00000144875 0.018±0.01 N/A 0.007±0.00 0.019±0.02 0.039±0.02 N/A N/A 0.014±0.00 0.008±0.00 0.023±0.00 N/A 0.026±0.03 0.002±0.00 N/A

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