C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007R5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2374 VISTA 9606 1:225466688-226068183
GeneTranscriptPositionBiotype
ENSG00000143742 (SRP9)
signal recognition particle 9kDa 		ENST00000304786 (SRP9-001) 225777829-225790466 protein_coding
ENST00000366838 (SRP9-003) 225777935-225789524 protein_coding
ENST00000366839 (SRP9-002) 225777837-225790466 protein_coding
ENST00000619790 (SRP9-201) 225777813-225786969 protein_coding
ENSG00000143751 (SDE2)
SDE2 telomere maintenance homolog (S. pombe) 		ENST00000272091 (SDE2-001) 225982702-225999331 protein_coding
ENSG00000143768 (LEFTY2)
left-right determination factor 2 		ENST00000366820 (LEFTY2-001) 225936604-225941489 protein_coding
ENST00000420304 (LEFTY2-201) 225936598-225941383 protein_coding
ENST00000474493 (LEFTY2-002) 225939432-225940101 processed_transcript
ENST00000616737 (LEFTY2-202) 225936628-225941173 protein_coding
ENSG00000143811 (PYCR2)
pyrroline-5-carboxylate reductase family, member 2 		ENST00000343818 (PYCR2-001) 225919878-225924259 protein_coding
ENST00000446534 (PYCR2-008) 225921222-225923079 retained_intron
ENST00000466127 (PYCR2-009) 225921216-225921934 retained_intron
ENST00000467298 (PYCR2-005) 225923140-225924000 retained_intron
ENST00000472798 (PYCR2-007) 225922029-225923891 protein_coding
ENST00000478402 (PYCR2-002) 225919878-225924278 retained_intron
ENST00000489681 (PYCR2-006) 225921604-225923993 protein_coding
ENST00000612039 (PYCR2-201) 225919877-225924340 protein_coding
ENST00000612651 (PYCR2-202) 225919877-225924110 protein_coding
ENSG00000143819 (EPHX1)
epoxide hydrolase 1, microsomal (xenobiotic) 		ENST00000272167 (EPHX1-201) 225810095-225845559 protein_coding
ENST00000366837 (EPHX1-001) 225825354-225845563 protein_coding
ENST00000445856 (EPHX1-002) 225810092-225838773 protein_coding
ENST00000448202 (EPHX1-003) 225810134-225838697 protein_coding
ENST00000467015 (EPHX1-004) 225828843-225832163 processed_transcript
ENST00000614058 (EPHX1-202) 225810412-225845559 protein_coding
ENSG00000196187 (TMEM63A)
transmembrane protein 63A 		ENST00000366835 (TMEM63A-001) 225845536-225882369 protein_coding
ENST00000436966 (TMEM63A-008) 225871092-225877679 protein_coding
ENST00000474478 (TMEM63A-002) 225859663-225866211 processed_transcript
ENST00000482753 (TMEM63A-004) 225847139-225848988 processed_transcript
ENST00000483779 (TMEM63A-006) 225862540-225866410 retained_intron
ENST00000487817 (TMEM63A-007) 225871574-225877494 processed_transcript
ENST00000487971 (TMEM63A-005) 225856704-225859541 processed_transcript
ENST00000496025 (TMEM63A-003) 225846576-225847465 processed_transcript
ENST00000537914 (TMEM63A-201) 225860724-225866748 protein_coding
ENSG00000226349 (RP11-145A3.2)
 ENST00000428148 (RP11-145A3.2-001) 225710968-225736274 sense_intronic
ENSG00000227496 (RP11-145A3.1)
 ENST00000448264 (RP11-145A3.1-001) 225700604-225752243 antisense
ENSG00000234112 (RP11-145A3.4)
 ENST00000434499 (RP11-145A3.4-001) 225803148-225803448 processed_pseudogene
ENSG00000243709 (LEFTY1)
left-right determination factor 1 		ENST00000272134 (LEFTY1-001) 225886282-225889146 protein_coding
ENST00000492457 (LEFTY1-002) 225887785-225911382 protein_coding
CIL_0007R5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2374 VISTA 10090 1:181809962-182412053
GeneTranscriptPositionBiotype
ENSMUSG00000004880 (Lbr)
lamin B receptor 		ENSMUST00000005003 (Lbr-201) 181815316-181842401 protein_coding
ENSMUSG00000022995 (Enah)
enabled homolog (Drosophila) 		ENSMUST00000078719 (Enah-201) 181904445-182019980 protein_coding
ENSMUST00000111024 (Enah-202) 181904445-182019980 protein_coding
ENSMUST00000111025 (Enah-203) 181904445-182019980 protein_coding
ENSMUST00000111030 (Enah-204) 181904445-182019980 protein_coding
ENSMUST00000177811 (Enah-205) 181904445-182019980 protein_coding
ENSMUSG00000026510 (Trp53bp2)
transformation related protein 53 binding protein 2 		ENSMUST00000117245 (Trp53bp2-001) 182409172-182462432 protein_coding
ENSMUSG00000026511 (Srp9)
signal recognition particle 9 		ENSMUST00000027792 (Srp9-001) 182124750-182132407 protein_coding
ENSMUST00000111018 (Srp9-002) 182124737-182131919 protein_coding
ENSMUSG00000038633 (Degs1)
degenerative spermatocyte homolog 1 (Drosophila) 		ENSMUST00000035295 (Degs1-001) 182275772-182282804 protein_coding
ENSMUST00000132551 (Degs1-002) 182278497-182282804 retained_intron
ENSMUST00000133052 (Degs1-003) 182279004-182282224 protein_coding
ENSMUSG00000047539 (Fbxo28)
F-box protein 28 		ENSMUST00000051431 (Fbxo28-201) 182313102-182341606 protein_coding
ENSMUSG00000056699 (Gm5533)
predicted gene 5533 		ENSMUST00000070987 (Gm5533-001) 181851574-181853189 lincRNA
ENSMUSG00000064970 (Gm23690)
predicted gene, 23690 		ENSMUST00000083036 (Gm23690-201) 181813607-181813700 snRNA
ENSMUSG00000073482 (Gm10517)
predicted gene 10517 		ENSMUST00000097444 (Gm10517-201) 182408619-182409020 protein_coding
ENSMUSG00000089429 (Gm26004)
predicted gene, 26004 		ENSMUST00000158804 (Gm26004-201) 181840453-181840568 rRNA
ENSMUSG00000091013 (Vmn1r1)
vomeronasal 1 receptor 1 		ENSMUST00000169123 (Vmn1r1-001) 182157144-182158319 protein_coding
ENSMUSG00000097260 (Gm5706)
predicted gene 5706 		ENSMUST00000181525 (Gm5706-001) 182392543-182393535 processed_pseudogene
ENSMUSG00000100147 (RP24-131B6.1)
RIKEN cDNA 1700047M11 gene 		ENSMUST00000185216 (RP24-131B6.1-002) 182300834-182303289 lincRNA
ENSMUST00000189594 (RP24-131B6.1-001) 182287990-182303325 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007R5_0001ENSG00000143742ENST00000304786ENST00000366838ENST00000366839ENST00000619790ENSG00000143751ENST00000272091ENSG00000143768ENST00000366820ENST00000420304ENST00000474493ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000466127ENST00000467298ENST00000472798ENST00000478402ENST00000489681ENST00000612039ENST00000612651ENSG00000143819ENST00000272167ENST00000366837ENST00000445856ENST00000448202ENST00000467015ENST00000614058ENSG00000196187ENST00000366835ENST00000436966ENST00000474478ENST00000482753ENST00000483779ENST00000487817ENST00000487971ENST00000496025ENST00000537914ENSG00000226349ENST00000428148ENSG00000227496ENST00000448264ENSG00000234112ENST00000434499ENSG00000243709ENST00000272134ENST00000492457CIL_0007R5_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007R5_0001ENSG00000143742ENST00000304786ENST00000366839ENST00000619790ENSG00000143751ENST00000272091ENSG00000143768ENST00000366820ENST00000420304ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000467298ENST00000478402ENST00000489681ENST00000612039ENST00000612651ENSG00000143819ENST00000272167ENST00000366837ENST00000445856ENST00000614058ENSG00000196187ENST00000366835ENST00000474478ENST00000537914ENSG00000226349ENST00000428148ENSG00000227496ENST00000448264ENSG00000234112ENST00000434499ENSG00000243709ENST00000272134ENST00000492457CIL_0007R5_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143742 ENST00000304786 30.017±0.00 31.774±0.00 14.435±0.00 48.510±3.58 35.205±3.32 37.513±8.08 30.839±13.36 50.044±19.35 33.898±11.74 26.969±5.41 17.705±11.12 46.343±8.11 32.171±5.59 33.458±14.31
ENST00000366838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366839 5.918±0.00 9.701±0.00 N/A 15.089±9.57 N/A 5.958±0.00 N/A 7.076±2.00 4.117±0.00 8.813±5.53 1.561±0.00 13.785±5.57 6.605±2.18 8.079±1.05
ENST00000619790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.882±0.00 N/A N/A N/A
ENSG00000143751 ENST00000272091 10.078±0.00 6.168±0.00 0.704±0.00 4.339±0.67 5.759±0.87 4.161±0.48 2.368±0.12 3.865±0.67 4.649±1.49 7.784±2.66 3.307±2.01 4.823±0.75 3.845±0.66 9.654±2.85
ENSG00000143768 ENST00000366820 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.682±0.00 N/A N/A N/A N/A
ENST00000420304 N/A N/A N/A 0.338±0.00 N/A 0.064±0.00 N/A N/A N/A N/A N/A 19.981±26.04 3.923±2.50 0.991±0.00
ENST00000474493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616737 N/A 0.347±0.00 N/A 0.028±0.00 0.432±0.04 0.284±0.25 0.151±0.11 0.787±0.00 0.044±0.00 0.980±0.81 0.051±0.00 31.542±24.41 4.849±2.35 2.159±1.64
ENSG00000143811 ENST00000343818 14.601±0.00 16.952±0.00 1.715±0.00 18.728±0.00 8.201±4.69 7.655±6.74 17.147±0.00 33.151±0.00 7.004±5.89 17.116±15.91 14.402±11.19 27.161±10.11 32.185±5.12 28.456±0.00
ENST00000446534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.405±0.00 N/A N/A
ENST00000466127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467298 N/A N/A N/A N/A N/A N/A N/A 1.587±0.00 N/A N/A N/A N/A N/A N/A
ENST00000472798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478402 N/A N/A N/A 1.226±0.00 0.692±0.00 N/A 0.320±0.00 N/A N/A N/A N/A 4.811±0.00 N/A 3.610±0.00
ENST00000489681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.668±0.00 N/A 15.907±0.00
ENST00000612039 3.460±0.00 8.776±0.00 1.257±0.00 6.169±0.33 3.084±0.80 2.482±0.00 3.344±0.00 N/A 1.892±0.00 1.480±0.00 5.117±0.00 16.073±11.03 N/A 19.723±0.00
ENST00000612651 N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 3.379±0.00 1.011±0.00 N/A N/A N/A N/A
ENSG00000143819 ENST00000272167 87.049±0.00 81.316±0.00 5.344±0.00 40.659±32.91 147.894±139.74 39.836±28.31 18.032±15.45 88.413±0.00 212.646±199.25 66.636±56.11 34.112±30.66 113.299±98.57 28.834±2.70 76.963±49.85
ENST00000366837 N/A N/A N/A N/A N/A N/A N/A 174.828±0.00 160.208±0.00 N/A N/A N/A N/A N/A
ENST00000445856 70.900±0.00 N/A N/A N/A 210.126±0.00 N/A N/A N/A N/A N/A N/A 191.548±0.00 N/A N/A
ENST00000448202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614058 N/A N/A 3.804±0.00 N/A N/A N/A 1.456±0.00 N/A N/A N/A 3.044±0.00 N/A N/A N/A
ENSG00000196187 ENST00000366835 6.708±0.00 11.121±0.00 2.298±0.00 15.836±0.00 4.685±0.00 5.991±1.13 3.332±2.46 15.709±0.00 2.922±0.00 13.328±0.00 0.840±0.00 13.280±4.84 8.663±3.75 3.274±0.00
ENST00000436966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474478 N/A N/A N/A N/A 2.259±0.00 1.719±0.00 N/A N/A N/A 1.592±0.00 N/A 1.393±0.00 N/A N/A
ENST00000482753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537914 N/A N/A N/A N/A 6.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226349 ENST00000428148 0.031±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A 0.163±0.00 0.168±0.00 N/A 0.079±0.02
ENSG00000227496 ENST00000448264 0.027±0.00 0.066±0.00 N/A 0.050±0.00 0.066±0.00 0.078±0.00 N/A 0.037±0.00 N/A 0.133±0.00 0.121±0.00 0.213±0.12 0.043±0.00 0.092±0.07
ENSG00000234112 ENST00000434499 0.173±0.00 N/A N/A 0.224±0.00 N/A 0.093±0.00 0.176±0.00 N/A N/A 0.797±0.00 N/A N/A N/A 0.154±0.07
ENSG00000243709 ENST00000272134 N/A N/A N/A N/A N/A 16.169±10.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492457 N/A N/A N/A N/A N/A N/A N/A 3.529±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004880 ENSMUST00000005003 11.068±3.62 7.080±0.38 12.382±0.15 5.483±4.01 14.429±6.10 16.336±1.97 5.297±0.93 4.891±2.11 26.554±26.38 15.588±5.87 5.154±0.52 10.077±3.40 12.090±8.81 5.672±2.99
ENSMUSG00000022995 ENSMUST00000078719 N/A N/A N/A N/A 0.300±0.08 0.519±0.00 N/A N/A N/A N/A N/A 1.628±0.00 N/A N/A
ENSMUST00000111024 1.217±0.10 0.748±0.35 N/A 7.939±0.00 0.310±0.03 0.906±0.22 3.128±0.00 0.775±0.00 0.005±0.00 0.934±0.00 1.169±0.09 3.234±0.90 2.166±0.64 2.204±0.44
ENSMUST00000111025 0.522±0.00 2.563±1.46 11.015±0.00 11.420±0.00 1.218±0.29 4.339±0.95 2.483±0.00 2.288±0.95 0.065±0.08 N/A N/A 14.209±10.24 10.810±9.35 22.296±26.98
ENSMUST00000111030 N/A 0.540±0.00 N/A N/A 0.342±0.01 1.133±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177811 N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000026510 ENSMUST00000117245 3.877±1.19 3.070±1.27 4.560±0.54 8.713±1.55 4.241±1.00 6.558±1.08 1.967±0.19 11.334±0.27 2.081±0.58 14.840±2.74 2.009±0.66 8.126±4.37 7.201±2.66 1.611±0.91
ENSMUSG00000026511 ENSMUST00000027792 26.882±3.27 46.454±3.07 37.328±4.04 25.774±7.28 25.960±4.64 32.699±1.90 19.983±2.60 37.988±2.32 39.867±4.71 28.068±0.97 26.471±1.45 30.117±6.19 42.118±21.60 49.013±16.25
ENSMUST00000111018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.730±0.00 16.512±1.03 N/A 21.986±6.57
ENSMUSG00000038633 ENSMUST00000035295 65.774±16.22 60.809±4.09 26.950±4.37 6.453±2.16 40.860±5.36 19.379±1.04 25.198±1.51 84.022±2.35 28.903±10.23 70.558±4.55 4.555±0.85 34.431±16.57 36.871±27.05 4.420±1.70
ENSMUST00000132551 N/A N/A N/A N/A N/A N/A N/A N/A 4.549±0.00 N/A N/A N/A N/A 1.876±1.17
ENSMUST00000133052 N/A N/A N/A N/A 37.082±0.00 N/A N/A N/A N/A N/A N/A 15.058±1.48 40.647±3.11 N/A
ENSMUSG00000047539 ENSMUST00000051431 7.481±0.80 8.101±3.69 5.653±0.13 6.372±1.59 5.852±1.14 5.008±1.18 2.886±0.44 4.108±0.28 2.168±0.81 5.514±0.51 3.480±0.24 9.619±2.22 5.446±1.40 2.927±0.67
ENSMUSG00000056699 ENSMUST00000070987 0.046±0.01 N/A 0.025±0.00 0.006±0.00 0.132±0.04 0.139±0.08 0.023±0.00 0.027±0.00 0.020±0.01 0.122±0.06 0.033±0.00 0.162±0.02 N/A 0.040±0.01
ENSMUSG00000064970 ENSMUST00000083036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4065.910±162.77
ENSMUSG00000073482 ENSMUST00000097444 0.310±0.18 0.715±0.07 0.196±0.03 0.671±0.35 0.586±0.30 0.647±0.35 0.143±0.00 0.658±0.39 0.156±0.07 0.324±0.17 N/A 0.485±0.19 0.134±0.09 1.237±0.32
ENSMUSG00000089429 ENSMUST00000158804 N/A N/A 38.961±0.00 N/A N/A N/A N/A N/A 12.318±2.73 N/A N/A 34.308±0.00 N/A N/A
ENSMUSG00000091013 ENSMUST00000169123 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.01
ENSMUSG00000097260 ENSMUST00000181525 0.033±0.00 N/A 0.055±0.00 N/A 0.093±0.02 N/A 0.039±0.01 0.033±0.00 N/A 0.465±0.09 N/A 0.047±0.00 0.075±0.04 0.054±0.02
ENSMUSG00000100147 ENSMUST00000185216 0.205±0.11 0.155±0.04 N/A 0.417±0.55 0.372±0.08 0.131±0.01 0.226±0.00 N/A 0.199±0.13 0.071±0.00 0.134±0.04 0.204±0.00 0.012±0.00 5.672±2.02
ENSMUST00000189594 0.183±0.08 0.114±0.07 0.315±0.02 0.244±0.33 0.122±0.05 0.068±0.04 0.126±0.07 0.067±0.01 0.723±1.09 0.088±0.04 0.052±0.03 0.056±0.01 0.027±0.02 0.208±0.04

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