C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007R5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2374 VISTA 9606 1:225466688-226068183
GeneTranscriptPositionBiotype
ENSG00000143742 (SRP9)
signal recognition particle 9kDa 		ENST00000304786 (SRP9-001) 225777829-225790466 protein_coding
ENST00000366838 (SRP9-003) 225777935-225789524 protein_coding
ENST00000366839 (SRP9-002) 225777837-225790466 protein_coding
ENST00000619790 (SRP9-201) 225777813-225786969 protein_coding
ENSG00000143751 (SDE2)
SDE2 telomere maintenance homolog (S. pombe) 		ENST00000272091 (SDE2-001) 225982702-225999331 protein_coding
ENSG00000143768 (LEFTY2)
left-right determination factor 2 		ENST00000366820 (LEFTY2-001) 225936604-225941489 protein_coding
ENST00000420304 (LEFTY2-201) 225936598-225941383 protein_coding
ENST00000474493 (LEFTY2-002) 225939432-225940101 processed_transcript
ENST00000616737 (LEFTY2-202) 225936628-225941173 protein_coding
ENSG00000143811 (PYCR2)
pyrroline-5-carboxylate reductase family, member 2 		ENST00000343818 (PYCR2-001) 225919878-225924259 protein_coding
ENST00000446534 (PYCR2-008) 225921222-225923079 retained_intron
ENST00000466127 (PYCR2-009) 225921216-225921934 retained_intron
ENST00000467298 (PYCR2-005) 225923140-225924000 retained_intron
ENST00000472798 (PYCR2-007) 225922029-225923891 protein_coding
ENST00000478402 (PYCR2-002) 225919878-225924278 retained_intron
ENST00000489681 (PYCR2-006) 225921604-225923993 protein_coding
ENST00000612039 (PYCR2-201) 225919877-225924340 protein_coding
ENST00000612651 (PYCR2-202) 225919877-225924110 protein_coding
ENSG00000143819 (EPHX1)
epoxide hydrolase 1, microsomal (xenobiotic) 		ENST00000272167 (EPHX1-201) 225810095-225845559 protein_coding
ENST00000366837 (EPHX1-001) 225825354-225845563 protein_coding
ENST00000445856 (EPHX1-002) 225810092-225838773 protein_coding
ENST00000448202 (EPHX1-003) 225810134-225838697 protein_coding
ENST00000467015 (EPHX1-004) 225828843-225832163 processed_transcript
ENST00000614058 (EPHX1-202) 225810412-225845559 protein_coding
ENSG00000196187 (TMEM63A)
transmembrane protein 63A 		ENST00000366835 (TMEM63A-001) 225845536-225882369 protein_coding
ENST00000436966 (TMEM63A-008) 225871092-225877679 protein_coding
ENST00000474478 (TMEM63A-002) 225859663-225866211 processed_transcript
ENST00000482753 (TMEM63A-004) 225847139-225848988 processed_transcript
ENST00000483779 (TMEM63A-006) 225862540-225866410 retained_intron
ENST00000487817 (TMEM63A-007) 225871574-225877494 processed_transcript
ENST00000487971 (TMEM63A-005) 225856704-225859541 processed_transcript
ENST00000496025 (TMEM63A-003) 225846576-225847465 processed_transcript
ENST00000537914 (TMEM63A-201) 225860724-225866748 protein_coding
ENSG00000226349 (RP11-145A3.2)
 ENST00000428148 (RP11-145A3.2-001) 225710968-225736274 sense_intronic
ENSG00000227496 (RP11-145A3.1)
 ENST00000448264 (RP11-145A3.1-001) 225700604-225752243 antisense
ENSG00000234112 (RP11-145A3.4)
 ENST00000434499 (RP11-145A3.4-001) 225803148-225803448 processed_pseudogene
ENSG00000243709 (LEFTY1)
left-right determination factor 1 		ENST00000272134 (LEFTY1-001) 225886282-225889146 protein_coding
ENST00000492457 (LEFTY1-002) 225887785-225911382 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007R5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2374 VISTA 10090 1:181809962-182412053
GeneTranscriptPositionBiotype
ENSMUSG00000004880 (Lbr)
lamin B receptor 		ENSMUST00000005003 (Lbr-201) 181815316-181842401 protein_coding
ENSMUSG00000022995 (Enah)
enabled homolog (Drosophila) 		ENSMUST00000078719 (Enah-201) 181904445-182019980 protein_coding
ENSMUST00000111024 (Enah-202) 181904445-182019980 protein_coding
ENSMUST00000111025 (Enah-203) 181904445-182019980 protein_coding
ENSMUST00000111030 (Enah-204) 181904445-182019980 protein_coding
ENSMUST00000177811 (Enah-205) 181904445-182019980 protein_coding
ENSMUSG00000026510 (Trp53bp2)
transformation related protein 53 binding protein 2 		ENSMUST00000117245 (Trp53bp2-001) 182409172-182462432 protein_coding
ENSMUSG00000026511 (Srp9)
signal recognition particle 9 		ENSMUST00000027792 (Srp9-001) 182124750-182132407 protein_coding
ENSMUST00000111018 (Srp9-002) 182124737-182131919 protein_coding
ENSMUSG00000038633 (Degs1)
degenerative spermatocyte homolog 1 (Drosophila) 		ENSMUST00000035295 (Degs1-001) 182275772-182282804 protein_coding
ENSMUST00000132551 (Degs1-002) 182278497-182282804 retained_intron
ENSMUST00000133052 (Degs1-003) 182279004-182282224 protein_coding
ENSMUSG00000047539 (Fbxo28)
F-box protein 28 		ENSMUST00000051431 (Fbxo28-201) 182313102-182341606 protein_coding
ENSMUSG00000056699 (Gm5533)
predicted gene 5533 		ENSMUST00000070987 (Gm5533-001) 181851574-181853189 lincRNA
ENSMUSG00000064970 (Gm23690)
predicted gene, 23690 		ENSMUST00000083036 (Gm23690-201) 181813607-181813700 snRNA
ENSMUSG00000073482 (Gm10517)
predicted gene 10517 		ENSMUST00000097444 (Gm10517-201) 182408619-182409020 protein_coding
ENSMUSG00000089429 (Gm26004)
predicted gene, 26004 		ENSMUST00000158804 (Gm26004-201) 181840453-181840568 rRNA
ENSMUSG00000091013 (Vmn1r1)
vomeronasal 1 receptor 1 		ENSMUST00000169123 (Vmn1r1-001) 182157144-182158319 protein_coding
ENSMUSG00000097260 (Gm5706)
predicted gene 5706 		ENSMUST00000181525 (Gm5706-001) 182392543-182393535 processed_pseudogene
ENSMUSG00000100147 (RP24-131B6.1)
RIKEN cDNA 1700047M11 gene 		ENSMUST00000185216 (RP24-131B6.1-002) 182300834-182303289 lincRNA
ENSMUST00000189594 (RP24-131B6.1-001) 182287990-182303325 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007R5_0001ENSG00000143742ENST00000304786ENST00000366838ENST00000366839ENST00000619790ENSG00000143751ENST00000272091ENSG00000143768ENST00000366820ENST00000420304ENST00000474493ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000466127ENST00000467298ENST00000472798ENST00000478402ENST00000489681ENST00000612039ENST00000612651ENSG00000143819ENST00000272167ENST00000366837ENST00000445856ENST00000448202ENST00000467015ENST00000614058ENSG00000196187ENST00000366835ENST00000436966ENST00000474478ENST00000482753ENST00000483779ENST00000487817ENST00000487971ENST00000496025ENST00000537914ENSG00000226349ENST00000428148ENSG00000227496ENST00000448264ENSG00000234112ENST00000434499ENSG00000243709ENST00000272134ENST00000492457CIL_0007R5_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007R5_0001ENSG00000143742ENST00000304786ENST00000366839ENST00000619790ENSG00000143751ENST00000272091ENSG00000143768ENST00000366820ENST00000420304ENST00000616737ENSG00000143811ENST00000343818ENST00000446534ENST00000467298ENST00000478402ENST00000489681ENST00000612039ENST00000612651ENSG00000143819ENST00000272167ENST00000366837ENST00000445856ENST00000614058ENSG00000196187ENST00000366835ENST00000474478ENST00000537914ENSG00000226349ENST00000428148ENSG00000227496ENST00000448264ENSG00000234112ENST00000434499ENSG00000243709ENST00000272134ENST00000492457CIL_0007R5_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143742 ENST00000304786 30.017±0.00 31.774±0.00 14.435±0.00 48.510±3.58 35.205±3.32 37.513±8.08 30.839±13.36 50.044±19.35 33.898±11.74 26.969±5.41 17.705±11.12 46.343±8.11 32.171±5.59 33.458±14.31
ENST00000366838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366839 5.918±0.00 9.701±0.00 N/A 15.089±9.57 N/A 5.958±0.00 N/A 7.076±2.00 4.117±0.00 8.813±5.53 1.561±0.00 13.785±5.57 6.605±2.18 8.079±1.05
ENST00000619790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.882±0.00 N/A N/A N/A
ENSG00000143751 ENST00000272091 10.078±0.00 6.168±0.00 0.704±0.00 4.339±0.67 5.759±0.87 4.161±0.48 2.368±0.12 3.865±0.67 4.649±1.49 7.784±2.66 3.307±2.01 4.823±0.75 3.845±0.66 9.654±2.85
ENSG00000143768 ENST00000366820 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.682±0.00 N/A N/A N/A N/A
ENST00000420304 N/A N/A N/A 0.338±0.00 N/A 0.064±0.00 N/A N/A N/A N/A N/A 19.981±26.04 3.923±2.50 0.991±0.00
ENST00000474493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616737 N/A 0.347±0.00 N/A 0.028±0.00 0.432±0.04 0.284±0.25 0.151±0.11 0.787±0.00 0.044±0.00 0.980±0.81 0.051±0.00 31.542±24.41 4.849±2.35 2.159±1.64
ENSG00000143811 ENST00000343818 14.601±0.00 16.952±0.00 1.715±0.00 18.728±0.00 8.201±4.69 7.655±6.74 17.147±0.00 33.151±0.00 7.004±5.89 17.116±15.91 14.402±11.19 27.161±10.11 32.185±5.12 28.456±0.00
ENST00000446534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.405±0.00 N/A N/A
ENST00000466127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467298 N/A N/A N/A N/A N/A N/A N/A 1.587±0.00 N/A N/A N/A N/A N/A N/A
ENST00000472798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478402 N/A N/A N/A 1.226±0.00 0.692±0.00 N/A 0.320±0.00 N/A N/A N/A N/A 4.811±0.00 N/A 3.610±0.00
ENST00000489681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.668±0.00 N/A 15.907±0.00
ENST00000612039 3.460±0.00 8.776±0.00 1.257±0.00 6.169±0.33 3.084±0.80 2.482±0.00 3.344±0.00 N/A 1.892±0.00 1.480±0.00 5.117±0.00 16.073±11.03 N/A 19.723±0.00
ENST00000612651 N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 3.379±0.00 1.011±0.00 N/A N/A N/A N/A
ENSG00000143819 ENST00000272167 87.049±0.00 81.316±0.00 5.344±0.00 40.659±32.91 147.894±139.74 39.836±28.31 18.032±15.45 88.413±0.00 212.646±199.25 66.636±56.11 34.112±30.66 113.299±98.57 28.834±2.70 76.963±49.85
ENST00000366837 N/A N/A N/A N/A N/A N/A N/A 174.828±0.00 160.208±0.00 N/A N/A N/A N/A N/A
ENST00000445856 70.900±0.00 N/A N/A N/A 210.126±0.00 N/A N/A N/A N/A N/A N/A 191.548±0.00 N/A N/A
ENST00000448202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614058 N/A N/A 3.804±0.00 N/A N/A N/A 1.456±0.00 N/A N/A N/A 3.044±0.00 N/A N/A N/A
ENSG00000196187 ENST00000366835 6.708±0.00 11.121±0.00 2.298±0.00 15.836±0.00 4.685±0.00 5.991±1.13 3.332±2.46 15.709±0.00 2.922±0.00 13.328±0.00 0.840±0.00 13.280±4.84 8.663±3.75 3.274±0.00
ENST00000436966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474478 N/A N/A N/A N/A 2.259±0.00 1.719±0.00 N/A N/A N/A 1.592±0.00 N/A 1.393±0.00 N/A N/A
ENST00000482753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537914 N/A N/A N/A N/A 6.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226349 ENST00000428148 0.031±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A 0.163±0.00 0.168±0.00 N/A 0.079±0.02
ENSG00000227496 ENST00000448264 0.027±0.00 0.066±0.00 N/A 0.050±0.00 0.066±0.00 0.078±0.00 N/A 0.037±0.00 N/A 0.133±0.00 0.121±0.00 0.213±0.12 0.043±0.00 0.092±0.07
ENSG00000234112 ENST00000434499 0.173±0.00 N/A N/A 0.224±0.00 N/A 0.093±0.00 0.176±0.00 N/A N/A 0.797±0.00 N/A N/A N/A 0.154±0.07
ENSG00000243709 ENST00000272134 N/A N/A N/A N/A N/A 16.169±10.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492457 N/A N/A N/A N/A N/A N/A N/A 3.529±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004880 ENSMUST00000005003 11.068±3.62 7.080±0.38 12.382±0.15 5.483±4.01 14.429±6.10 16.336±1.97 5.297±0.93 4.891±2.11 26.554±26.38 15.588±5.87 5.154±0.52 10.077±3.40 12.090±8.81 5.672±2.99
ENSMUSG00000022995 ENSMUST00000078719 N/A N/A N/A N/A 0.300±0.08 0.519±0.00 N/A N/A N/A N/A N/A 1.628±0.00 N/A N/A
ENSMUST00000111024 1.217±0.10 0.748±0.35 N/A 7.939±0.00 0.310±0.03 0.906±0.22 3.128±0.00 0.775±0.00 0.005±0.00 0.934±0.00 1.169±0.09 3.234±0.90 2.166±0.64 2.204±0.44
ENSMUST00000111025 0.522±0.00 2.563±1.46 11.015±0.00 11.420±0.00 1.218±0.29 4.339±0.95 2.483±0.00 2.288±0.95 0.065±0.08 N/A N/A 14.209±10.24 10.810±9.35 22.296±26.98
ENSMUST00000111030 N/A 0.540±0.00 N/A N/A 0.342±0.01 1.133±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177811 N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000026510 ENSMUST00000117245 3.877±1.19 3.070±1.27 4.560±0.54 8.713±1.55 4.241±1.00 6.558±1.08 1.967±0.19 11.334±0.27 2.081±0.58 14.840±2.74 2.009±0.66 8.126±4.37 7.201±2.66 1.611±0.91
ENSMUSG00000026511 ENSMUST00000027792 26.882±3.27 46.454±3.07 37.328±4.04 25.774±7.28 25.960±4.64 32.699±1.90 19.983±2.60 37.988±2.32 39.867±4.71 28.068±0.97 26.471±1.45 30.117±6.19 42.118±21.60 49.013±16.25
ENSMUST00000111018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.730±0.00 16.512±1.03 N/A 21.986±6.57
ENSMUSG00000038633 ENSMUST00000035295 65.774±16.22 60.809±4.09 26.950±4.37 6.453±2.16 40.860±5.36 19.379±1.04 25.198±1.51 84.022±2.35 28.903±10.23 70.558±4.55 4.555±0.85 34.431±16.57 36.871±27.05 4.420±1.70
ENSMUST00000132551 N/A N/A N/A N/A N/A N/A N/A N/A 4.549±0.00 N/A N/A N/A N/A 1.876±1.17
ENSMUST00000133052 N/A N/A N/A N/A 37.082±0.00 N/A N/A N/A N/A N/A N/A 15.058±1.48 40.647±3.11 N/A
ENSMUSG00000047539 ENSMUST00000051431 7.481±0.80 8.101±3.69 5.653±0.13 6.372±1.59 5.852±1.14 5.008±1.18 2.886±0.44 4.108±0.28 2.168±0.81 5.514±0.51 3.480±0.24 9.619±2.22 5.446±1.40 2.927±0.67
ENSMUSG00000056699 ENSMUST00000070987 0.046±0.01 N/A 0.025±0.00 0.006±0.00 0.132±0.04 0.139±0.08 0.023±0.00 0.027±0.00 0.020±0.01 0.122±0.06 0.033±0.00 0.162±0.02 N/A 0.040±0.01
ENSMUSG00000064970 ENSMUST00000083036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4065.910±162.77
ENSMUSG00000073482 ENSMUST00000097444 0.310±0.18 0.715±0.07 0.196±0.03 0.671±0.35 0.586±0.30 0.647±0.35 0.143±0.00 0.658±0.39 0.156±0.07 0.324±0.17 N/A 0.485±0.19 0.134±0.09 1.237±0.32
ENSMUSG00000089429 ENSMUST00000158804 N/A N/A 38.961±0.00 N/A N/A N/A N/A N/A 12.318±2.73 N/A N/A 34.308±0.00 N/A N/A
ENSMUSG00000091013 ENSMUST00000169123 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.01
ENSMUSG00000097260 ENSMUST00000181525 0.033±0.00 N/A 0.055±0.00 N/A 0.093±0.02 N/A 0.039±0.01 0.033±0.00 N/A 0.465±0.09 N/A 0.047±0.00 0.075±0.04 0.054±0.02
ENSMUSG00000100147 ENSMUST00000185216 0.205±0.11 0.155±0.04 N/A 0.417±0.55 0.372±0.08 0.131±0.01 0.226±0.00 N/A 0.199±0.13 0.071±0.00 0.134±0.04 0.204±0.00 0.012±0.00 5.672±2.02
ENSMUST00000189594 0.183±0.08 0.114±0.07 0.315±0.02 0.244±0.33 0.122±0.05 0.068±0.04 0.126±0.07 0.067±0.01 0.723±1.09 0.088±0.04 0.052±0.03 0.056±0.01 0.027±0.02 0.208±0.04

Loading