Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
hs689	VISTA	9606	2:163024403-163625682
Gene	Transcript	Position	Biotype
ENSG00000182263 (FIGN) fidgetin	ENST00000333129 (FIGN-001)	163602611-163736007	protein_coding
ENST00000409634 (FIGN-004)	163593396-163736012	protein_coding
ENST00000482917 (FIGN-003)	163611354-163735984	processed_transcript
ENSG00000230282 (RPL7P61) ribosomal protein L7 pseudogene 61	ENST00000451721 (RPL7P61-001)	163152251-163153307	processed_pseudogene
ENSG00000274608 (AC104697.1)	ENST00000617160 (AC104697.1-201)	163090999-163091099	miRNA

Notice (8): Undefined index: CIL_0007R7_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007R7_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000182263' => 'fidgetin',
		'ENSG00000200902' => 'RNA, U6 small nuclear 627, pseudogene',
		'ENSG00000230282' => 'ribosomal protein L7 pseudogene 61',
		'ENSG00000274608' => null,
		'ENSMUSG00000065837' => 'predicted gene, 23503'
	),
	'gene_name_arr' => array(
		'ENSG00000182263' => 'FIGN',
		'ENSG00000200902' => 'RNU6-627P',
		'ENSG00000230282' => 'RPL7P61',
		'ENSG00000274608' => 'AC104697.1',
		'ENSMUSG00000065837' => 'Gm23503'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Brain',
		(int) 3 => 'Breast',
		(int) 4 => 'Heart',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Muscle',
		(int) 11 => 'Ovary',
		(int) 13 => 'Placenta',
		(int) 14 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 7,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000333129' => array(
			'start' => '163602611',
			'end' => '163736007',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FIGN-001'
		),
		'ENST00000409634' => array(
			'start' => '163593396',
			'end' => '163736012',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FIGN-004'
		),
		'ENST00000482917' => array(
			'start' => '163611354',
			'end' => '163735984',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'FIGN-003'
		),
		'ENST00000364032' => array(
			'start' => '163288995',
			'end' => '163289096',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-627P-201'
		),
		'ENST00000451721' => array(
			'start' => '163152251',
			'end' => '163153307',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RPL7P61-001'
		),
		'ENST00000617160' => array(
			'start' => '163090999',
			'end' => '163091099',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC104697.1-201'
		),
		'ENSMUST00000083903' => array(
			'start' => '63432088',
			'end' => '63432194',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'Gm23503-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007R7_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007R7_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182263' => array(
				[maximum depth reached]
			),
			'ENSG00000230282' => array(
				[maximum depth reached]
			),
			'ENSG00000274608' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Heart',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Lung',
			(int) 13 => 'Muscle',
			(int) 14 => 'Testis',
			(int) 15 => 'Ovary',
			(int) 16 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000182263' => 'fidgetin',
	'ENSG00000200902' => 'RNA, U6 small nuclear 627, pseudogene',
	'ENSG00000230282' => 'ribosomal protein L7 pseudogene 61',
	'ENSG00000274608' => null,
	'ENSMUSG00000065837' => 'predicted gene, 23503'
)
$gene_name_arr = array(
	'ENSG00000182263' => 'FIGN',
	'ENSG00000200902' => 'RNU6-627P',
	'ENSG00000230282' => 'RPL7P61',
	'ENSG00000274608' => 'AC104697.1',
	'ENSMUSG00000065837' => 'Gm23503'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007R7_0001',
			'tax_id' => '9606',
			'chromosome' => '2',
			'seq_start' => '163024403',
			'seq_end' => '163625682',
			'region_length' => '601279',
			'region_type' => 'VISTA',
			'el_id' => 'hs689'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007R7_0002',
			'tax_id' => '10090',
			'chromosome' => '2',
			'seq_start' => '63369378',
			'seq_end' => '63970651',
			'region_length' => '601273',
			'region_type' => 'VISTA',
			'el_id' => 'hs689'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Brain',
	(int) 3 => 'Breast',
	(int) 4 => 'Heart',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Muscle',
	(int) 11 => 'Ovary',
	(int) 13 => 'Placenta',
	(int) 14 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 7
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000333129' => array(
		'start' => '163602611',
		'end' => '163736007',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FIGN-001'
	),
	'ENST00000409634' => array(
		'start' => '163593396',
		'end' => '163736012',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FIGN-004'
	),
	'ENST00000482917' => array(
		'start' => '163611354',
		'end' => '163735984',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'FIGN-003'
	),
	'ENST00000364032' => array(
		'start' => '163288995',
		'end' => '163289096',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-627P-201'
	),
	'ENST00000451721' => array(
		'start' => '163152251',
		'end' => '163153307',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RPL7P61-001'
	),
	'ENST00000617160' => array(
		'start' => '163090999',
		'end' => '163091099',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC104697.1-201'
	),
	'ENSMUST00000083903' => array(
		'start' => '63432088',
		'end' => '63432194',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'Gm23503-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007R7_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182263' => array(
				[maximum depth reached]
			),
			'ENSG00000230282' => array(
				[maximum depth reached]
			),
			'ENSG00000274608' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Heart',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Lung',
			(int) 13 => 'Muscle',
			(int) 14 => 'Testis',
			(int) 15 => 'Ovary',
			(int) 16 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007R7_0002',
		'tax_id' => '10090',
		'chromosome' => '2',
		'seq_start' => '63369378',
		'seq_end' => '63970651',
		'region_length' => '601273',
		'region_type' => 'VISTA',
		'el_id' => 'hs689'
	)
)
$gene_el = array(
	'ENST00000617160' => array(
		'Ovary' => array(
			'average_FPKM' => '1.788',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '1.684',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000274608'
$is_first = false
$tran_el = array(
	'Ovary' => array(
		'average_FPKM' => '1.788',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '1.684',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000617160'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007R7_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000182263' => 'fidgetin',
		'ENSG00000200902' => 'RNA, U6 small nuclear 627, pseudogene',
		'ENSG00000230282' => 'ribosomal protein L7 pseudogene 61',
		'ENSG00000274608' => null,
		'ENSMUSG00000065837' => 'predicted gene, 23503'
	),
	'gene_name_arr' => array(
		'ENSG00000182263' => 'FIGN',
		'ENSG00000200902' => 'RNU6-627P',
		'ENSG00000230282' => 'RPL7P61',
		'ENSG00000274608' => 'AC104697.1',
		'ENSMUSG00000065837' => 'Gm23503'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Brain',
		(int) 3 => 'Breast',
		(int) 4 => 'Heart',
		(int) 5 => 'Kidney',
		(int) 6 => 'Liver',
		(int) 7 => 'Lung',
		(int) 9 => 'Muscle',
		(int) 11 => 'Ovary',
		(int) 13 => 'Placenta',
		(int) 14 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 7,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000333129' => array(
			'start' => '163602611',
			'end' => '163736007',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FIGN-001'
		),
		'ENST00000409634' => array(
			'start' => '163593396',
			'end' => '163736012',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FIGN-004'
		),
		'ENST00000482917' => array(
			'start' => '163611354',
			'end' => '163735984',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'FIGN-003'
		),
		'ENST00000364032' => array(
			'start' => '163288995',
			'end' => '163289096',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-627P-201'
		),
		'ENST00000451721' => array(
			'start' => '163152251',
			'end' => '163153307',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RPL7P61-001'
		),
		'ENST00000617160' => array(
			'start' => '163090999',
			'end' => '163091099',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC104697.1-201'
		),
		'ENSMUST00000083903' => array(
			'start' => '63432088',
			'end' => '63432194',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'Gm23503-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007R7_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007R7_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182263' => array(
				[maximum depth reached]
			),
			'ENSG00000230282' => array(
				[maximum depth reached]
			),
			'ENSG00000274608' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Heart',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Lung',
			(int) 13 => 'Muscle',
			(int) 14 => 'Testis',
			(int) 15 => 'Ovary',
			(int) 16 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000182263' => 'fidgetin',
	'ENSG00000200902' => 'RNA, U6 small nuclear 627, pseudogene',
	'ENSG00000230282' => 'ribosomal protein L7 pseudogene 61',
	'ENSG00000274608' => null,
	'ENSMUSG00000065837' => 'predicted gene, 23503'
)
$gene_name_arr = array(
	'ENSG00000182263' => 'FIGN',
	'ENSG00000200902' => 'RNU6-627P',
	'ENSG00000230282' => 'RPL7P61',
	'ENSG00000274608' => 'AC104697.1',
	'ENSMUSG00000065837' => 'Gm23503'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007R7_0001',
			'tax_id' => '9606',
			'chromosome' => '2',
			'seq_start' => '163024403',
			'seq_end' => '163625682',
			'region_length' => '601279',
			'region_type' => 'VISTA',
			'el_id' => 'hs689'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007R7_0002',
			'tax_id' => '10090',
			'chromosome' => '2',
			'seq_start' => '63369378',
			'seq_end' => '63970651',
			'region_length' => '601273',
			'region_type' => 'VISTA',
			'el_id' => 'hs689'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Brain',
	(int) 3 => 'Breast',
	(int) 4 => 'Heart',
	(int) 5 => 'Kidney',
	(int) 6 => 'Liver',
	(int) 7 => 'Lung',
	(int) 9 => 'Muscle',
	(int) 11 => 'Ovary',
	(int) 13 => 'Placenta',
	(int) 14 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 7
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000333129' => array(
		'start' => '163602611',
		'end' => '163736007',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FIGN-001'
	),
	'ENST00000409634' => array(
		'start' => '163593396',
		'end' => '163736012',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FIGN-004'
	),
	'ENST00000482917' => array(
		'start' => '163611354',
		'end' => '163735984',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'FIGN-003'
	),
	'ENST00000364032' => array(
		'start' => '163288995',
		'end' => '163289096',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-627P-201'
	),
	'ENST00000451721' => array(
		'start' => '163152251',
		'end' => '163153307',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RPL7P61-001'
	),
	'ENST00000617160' => array(
		'start' => '163090999',
		'end' => '163091099',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC104697.1-201'
	),
	'ENSMUST00000083903' => array(
		'start' => '63432088',
		'end' => '63432194',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'Gm23503-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007R7_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182263' => array(
				[maximum depth reached]
			),
			'ENSG00000230282' => array(
				[maximum depth reached]
			),
			'ENSG00000274608' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Breast',
			(int) 2 => 'Heart',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Lung',
			(int) 13 => 'Muscle',
			(int) 14 => 'Testis',
			(int) 15 => 'Ovary',
			(int) 16 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007R7_0002',
		'tax_id' => '10090',
		'chromosome' => '2',
		'seq_start' => '63369378',
		'seq_end' => '63970651',
		'region_length' => '601273',
		'region_type' => 'VISTA',
		'el_id' => 'hs689'
	)
)
$gene_el = array(
	'ENST00000617160' => array(
		'Ovary' => array(
			'average_FPKM' => '1.788',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '1.684',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000274608'
$is_first = false
$tran_el = array(
	'Ovary' => array(
		'average_FPKM' => '1.788',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '1.684',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000617160'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
hs689		VISTA	10090	2:63369378-63970651
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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