C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007SB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm384 VISTA 9606 14:53193015-53794347
GeneTranscriptPositionBiotype
ENSG00000225680 (AL163953.2)
 ENST00000436530 (AL163953.2-001) 53599832-53614026 lincRNA
ENSG00000226132 (RPS3AP46)
ribosomal protein S3a pseudogene 46 		ENST00000448352 (RPS3AP46-001) 53612724-53613405 processed_pseudogene
ENSG00000235269 (AL162759.1)
 ENST00000418927 (AL162759.1-001) 53768942-53850882 lincRNA
ENSG00000237356 (AL163953.3)
 ENST00000425648 (AL163953.3-002) 53369381-53526242 lincRNA
ENST00000435322 (AL163953.3-003) 53217891-53369501 lincRNA
ENST00000454942 (AL163953.3-004) 53169054-53326711 lincRNA
ENST00000456100 (AL163953.3-001) 53217712-53687258 lincRNA
ENST00000612453 (AL163953.3-005) 53590943-53591374 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0007SB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm384 VISTA 10090 14:45643840-46245127
GeneTranscriptPositionBiotype
ENSMUSG00000037697 (Ddhd1)
DDHD domain containing 1 		ENSMUST00000051310 (Ddhd1-009) 45593174-45658143 protein_coding
ENSMUST00000087320 (Ddhd1-002) 45594651-45658098 protein_coding
ENSMUST00000111828 (Ddhd1-001) 45595417-45658142 protein_coding
ENSMUST00000126428 (Ddhd1-007) 45605004-45609342 retained_intron
ENSMUST00000129599 (Ddhd1-004) 45594722-45623190 retained_intron
ENSMUST00000141487 (Ddhd1-010) 45595327-45620786 nonsense_mediated_decay
ENSMUST00000147551 (Ddhd1-006) 45620712-45657401 processed_transcript
ENSMUST00000149286 (Ddhd1-003) 45594651-45658098 nonsense_mediated_decay
ENSMUST00000152110 (Ddhd1-011) 45593485-45621275 retained_intron
ENSMUST00000153547 (Ddhd1-008) 45628407-45657418 retained_intron
ENSMUST00000156758 (Ddhd1-005) 45594935-45602727 nonsense_mediated_decay
ENSMUSG00000044285 (Gm1821)
predicted gene 1821 		ENSMUST00000111388 (Gm1821-001) 46084126-46084815 processed_pseudogene
ENSMUSG00000081840 (Gm15220)
predicted gene 15220 		ENSMUST00000120730 (Gm15220-001) 45919087-45919465 processed_pseudogene
ENSMUSG00000082475 (Gm7206)
predicted pseudogene 7206 		ENSMUST00000117730 (Gm7206-001) 45713344-45713723 processed_pseudogene
ENSMUSG00000082662 (Gm15516)
predicted gene 15516 		ENSMUST00000117292 (Gm15516-001) 45713132-45713324 processed_pseudogene
ENSMUSG00000083169 (Gm6580)
predicted gene 6580 		ENSMUST00000117504 (Gm6580-001) 46027428-46028784 processed_pseudogene
ENSMUSG00000084276 (Gm8317)
predicted gene 8317 		ENSMUST00000121261 (Gm8317-001) 45858076-45858546 processed_pseudogene
ENSMUSG00000085866 (Gm15218)
predicted gene 15218 		ENSMUST00000131006 (Gm15218-001) 45754689-45993170 lincRNA
ENSMUSG00000086124 (A530076I17Rik)
RIKEN cDNA A530076I17 gene 		ENSMUST00000138379 (A530076I17Rik-001) 45666623-45668498 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SB_0001ENSG00000225680ENST00000436530ENSG00000226132ENST00000448352ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0007SB_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SB_0001ENSG00000225680ENST00000436530ENSG00000226132ENST00000448352ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0007SB_0002ENSMUSG00000037697ENSMUST00000051310ENSMUST00000087320ENSMUST00000111828ENSMUST00000126428ENSMUST00000129599ENSMUST00000141487ENSMUST00000147551ENSMUST00000149286ENSMUST00000152110ENSMUSG00000044285ENSMUST00000111388ENSMUSG00000081840ENSMUST00000120730ENSMUSG00000082475ENSMUST00000117730ENSMUSG00000082662ENSMUST00000117292ENSMUSG00000083169ENSMUST00000117504ENSMUSG00000084276ENSMUST00000121261ENSMUSG00000085866ENSMUST00000131006ENSMUSG00000086124ENSMUST00000138379
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000225680 ENST00000436530 N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A 0.381±0.17 N/A 0.029±0.00
ENSG00000226132 ENST00000448352 N/A 0.034±0.00 N/A N/A 0.082±0.00 N/A N/A N/A 0.050±0.00 0.016±0.00 N/A 0.765±0.00 N/A 0.102±0.01
ENSG00000235269 ENST00000418927 N/A N/A 0.383±0.00 N/A N/A 0.082±0.00 N/A N/A 0.090±0.00 N/A N/A 0.212±0.00 0.070±0.00 N/A
ENSG00000237356 ENST00000425648 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A 0.157±0.00 N/A 0.070±0.00 0.096±0.00 N/A
ENST00000435322 N/A N/A N/A 0.063±0.00 N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.321±0.00 0.127±0.00 N/A
ENST00000454942 N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.242±0.00 0.238±0.00
ENST00000456100 N/A N/A N/A 0.270±0.00 0.051±0.00 0.821±0.22 0.145±0.00 0.234±0.00 N/A 0.221±0.13 N/A 0.892±0.18 0.125±0.00 0.840±0.51
ENST00000612453 0.085±0.00 0.088±0.00 N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.231±0.00 N/A 0.143±0.00 N/A 0.143±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037697 ENSMUST00000051310 2.429±0.51 1.418±0.22 2.017±0.33 5.297±1.86 2.683±0.47 1.202±0.33 0.635±0.00 1.404±0.46 2.296±0.71 2.709±0.90 0.236±0.02 3.202±0.92 1.435±0.56 10.311±1.52
ENSMUST00000087320 1.947±0.00 N/A 1.644±0.00 N/A 1.260±0.00 0.777±0.00 0.784±0.00 0.993±0.00 2.532±1.03 N/A 0.478±0.19 2.951±0.26 1.667±0.00 N/A
ENSMUST00000111828 4.448±0.93 7.454±2.00 N/A N/A 4.655±1.53 2.565±0.74 1.538±0.07 1.953±0.63 2.371±0.87 6.034±1.06 0.463±0.00 5.897±3.00 1.855±0.17 45.825±16.78
ENSMUST00000126428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.823±0.00 6.394±0.00 N/A
ENSMUST00000129599 2.047±0.37 N/A 3.885±0.11 5.530±0.03 2.423±0.80 N/A 0.953±0.14 1.454±0.36 6.393±2.50 N/A 0.438±0.07 4.586±0.14 3.320±0.85 N/A
ENSMUST00000141487 N/A N/A 3.325±0.00 11.844±0.00 N/A N/A N/A N/A N/A N/A N/A 9.470±2.48 5.162±1.23 34.806±13.80
ENSMUST00000147551 N/A N/A N/A 30.479±0.00 N/A N/A N/A N/A N/A N/A N/A 25.112±0.00 14.792±7.01 134.624±0.00
ENSMUST00000149286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.006±0.80 N/A N/A
ENSMUST00000152110 N/A N/A 1.290±0.06 N/A N/A 2.340±0.00 N/A N/A N/A N/A N/A 1.743±0.00 N/A N/A
ENSMUST00000153547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044285 ENSMUST00000111388 1.440±0.29 0.907±0.10 151.800±149.70 139.229±192.18 0.975±0.24 1.206±0.30 0.600±0.19 1.306±0.43 50.628±107.93 1.612±0.21 0.472±0.36 1.416±0.72 40.984±87.50 2.898±1.28
ENSMUSG00000081840 ENSMUST00000120730 0.160±0.00 N/A N/A 0.103±0.00 N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082475 ENSMUST00000117730 0.201±0.00 N/A 14.733±0.00 8.164±0.00 N/A N/A N/A N/A 14.654±15.12 N/A 0.103±0.00 0.170±0.00 0.058±0.01 N/A
ENSMUSG00000082662 ENSMUST00000117292 N/A N/A 0.479±0.12 N/A N/A N/A N/A N/A N/A N/A N/A 2.103±0.00 0.256±0.00 1.186±0.00
ENSMUSG00000083169 ENSMUST00000117504 0.040±0.01 N/A 0.100±0.02 0.061±0.00 0.048±0.00 0.067±0.03 0.022±0.00 N/A 0.105±0.09 0.043±0.01 0.030±0.01 0.052±0.02 0.042±0.01 0.060±0.00
ENSMUSG00000084276 ENSMUST00000121261 N/A N/A 0.024±0.00 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 0.322±0.21 N/A
ENSMUSG00000085866 ENSMUST00000131006 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A 0.137±0.00
ENSMUSG00000086124 ENSMUST00000138379 0.074±0.01 N/A 0.005±0.00 0.039±0.00 0.134±0.07 N/A 0.025±0.00 0.047±0.01 0.024±0.02 0.052±0.01 0.016±0.01 0.184±0.16 0.013±0.01 0.064±0.03

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