C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007UQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs234 VISTA 9606 11:31363809-31965336
GeneTranscriptPositionBiotype
ENSG00000049449 (RCN1)
reticulocalbin 1, EF-hand calcium binding domain 		ENST00000054950 (RCN1-002) 32090904-32105755 protein_coding
ENST00000506388 (RCN1-011) 31816566-31887043 processed_transcript
ENST00000527337 (RCN1-007) 32100547-32104684 nonsense_mediated_decay
ENST00000528630 (RCN1-008) 32104386-32105532 protein_coding
ENST00000530146 (RCN1-012) 31885774-31917941 processed_transcript
ENST00000530348 (RCN1-013) 31812391-32100594 protein_coding
ENST00000531345 (RCN1-004) 32101995-32105531 retained_intron
ENST00000532474 (RCN1-006) 32100532-32104602 processed_transcript
ENST00000532721 (RCN1-005) 32091610-32098458 protein_coding
ENST00000532942 (RCN1-001) 31816384-32104665 protein_coding
ENST00000533898 (RCN1-003) 32096534-32105536 retained_intron
ENSG00000109911 (ELP4)
elongator acetyltransferase complex subunit 4 		ENST00000350638 (ELP4-001) 31509750-31783998 protein_coding
ENST00000379163 (ELP4-004) 31509770-31783771 protein_coding
ENST00000395934 (ELP4-003) 31509778-31783775 protein_coding
ENST00000474374 (ELP4-002) 31509771-31650221 nonsense_mediated_decay
ENSG00000170959 (DCDC1)
doublecortin domain containing 1 		ENST00000303697 (DCDC1-005) 30863603-30906705 nonsense_mediated_decay
ENST00000342355 (DCDC1-002) 30943202-31369810 nonsense_mediated_decay
ENST00000406071 (DCDC1-201) 30863604-30992686 protein_coding
ENST00000429306 (DCDC1-006) 30906315-30909104 retained_intron
ENST00000437348 (DCDC1-011) 30931771-31127665 processed_transcript
ENST00000444572 (DCDC1-008) 30830369-30925408 nonsense_mediated_decay
ENST00000452803 (DCDC1-001) 31262624-31369774 protein_coding
ENST00000483396 (DCDC1-009) 30864942-30992684 retained_intron
ENST00000534021 (DCDC1-004) 31155903-31241616 processed_transcript
ENST00000534722 (DCDC1-003) 31106894-31241758 processed_transcript
ENST00000597505 (DCDC1-010) 30878584-31328280 protein_coding
ENSG00000221338 (AC108456.1)
 ENST00000408411 (AC108456.1-201) 31435470-31435562 miRNA
ENSG00000228061 (Z83001.1)
 ENST00000429821 (Z83001.1-002) 31637328-31767953 antisense
ENST00000434742 (Z83001.1-001) 31727785-31767825 antisense
ENST00000454509 (Z83001.1-003) 31689182-31767825 antisense
CIL_0007UQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs234 VISTA 10090 2:105478530-106080039
GeneTranscriptPositionBiotype
ENSMUSG00000027166 (Dnajc24)
DnaJ (Hsp40) homolog, subfamily C, member 24 		ENSMUST00000102555 (Dnajc24-001) 105966709-106003549 protein_coding
ENSMUST00000124163 (Dnajc24-002) 105966784-106003263 processed_transcript
ENSMUST00000133569 (Dnajc24-003) 105970439-106002077 processed_transcript
ENSMUST00000151581 (Dnajc24-004) 105967012-106003202 processed_transcript
ENSMUST00000155811 (Dnajc24-005) 105966709-106002008 protein_coding
ENSMUSG00000027167 (Elp4)
elongation protein 4 homolog (S. cerevisiae) 		ENSMUST00000028588 (Elp4-003) 105731448-105865982 protein_coding
ENSMUST00000122965 (Elp4-001) 105701027-105904564 protein_coding
ENSMUST00000148441 (Elp4-002) 105866070-105904483 processed_transcript
ENSMUST00000152272 (Elp4-004) 105792079-105814322 retained_intron
ENSMUSG00000042670 (Immp1l)
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 		ENSMUST00000037499 (Immp1l-001) 105904638-105965558 protein_coding
ENSMUSG00000074981 (Dcdc5)
doublecortin domain containing 5 		ENSMUST00000037284 (Dcdc5-004) 106383687-106406151 retained_intron
ENSMUST00000122388 (Dcdc5-001) 106038218-106385623 unitary_pseudogene
ENSMUST00000126340 (Dcdc5-002) 106003336-106040626 processed_transcript
ENSMUST00000148101 (Dcdc5-005) 106226454-106336141 processed_transcript
ENSMUST00000152776 (Dcdc5-003) 106222057-106385623 processed_transcript
ENSMUSG00000080859 (Rpl10-ps1)
ribosomal protein L10, pseudogene 1 		ENSMUST00000119438 (Rpl10-ps1-001) 105554201-105554845 transcribed_processed_pseudogene
ENSMUSG00000084870 (Gm13954)
predicted gene 13954 		ENSMUST00000123441 (Gm13954-001) 105708999-105710098 antisense
ENSMUSG00000086029 (Pax6os1)
paired box 6 opposite strand 1 		ENSMUST00000126948 (Pax6os1-002) 105536939-105670280 antisense
ENSMUST00000149133 (Pax6os1-001) 105536080-105670330 antisense
ENSMUSG00000093363 (Gm22002)
predicted gene, 22002 		ENSMUST00000175622 (Gm22002-201) 105992757-105992881 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UQ_0001ENSG00000049449ENST00000054950ENST00000506388ENST00000527337ENST00000528630ENST00000530146ENST00000530348ENST00000531345ENST00000532474ENST00000532721ENST00000532942ENST00000533898ENSG00000109911ENST00000350638ENST00000379163ENST00000395934ENST00000474374ENSG00000170959ENST00000303697ENST00000342355ENST00000406071ENST00000429306ENST00000437348ENST00000444572ENST00000452803ENST00000483396ENST00000534021ENST00000534722ENST00000597505ENSG00000221338ENST00000408411ENSG00000228061ENST00000429821ENST00000434742ENST00000454509CIL_0007UQ_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UQ_0001ENSG00000049449ENST00000054950ENST00000528630ENST00000530348ENST00000532721ENST00000532942ENST00000533898ENSG00000109911ENST00000350638ENST00000379163ENST00000395934ENST00000474374ENSG00000170959ENST00000303697ENST00000342355ENST00000406071ENST00000437348ENST00000444572ENST00000452803ENST00000483396ENST00000597505ENSG00000221338ENST00000408411ENSG00000228061ENST00000429821ENST00000434742ENST00000454509CIL_0007UQ_0002ENSMUSG00000027166ENSMUST00000102555ENSMUST00000124163ENSMUST00000133569ENSMUST00000151581ENSMUST00000155811ENSMUSG00000027167ENSMUST00000028588ENSMUST00000122965ENSMUST00000148441ENSMUST00000152272ENSMUSG00000042670ENSMUST00000037499ENSMUSG00000074981ENSMUST00000037284ENSMUST00000126340ENSMUST00000148101ENSMUST00000152776ENSMUSG00000080859ENSMUST00000119438ENSMUSG00000084870ENSMUST00000123441ENSMUSG00000086029ENSMUST00000126948ENSMUST00000149133ENSMUSG00000093363ENSMUST00000175622
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000049449 ENST00000054950 10.534±0.00 N/A 1.064±0.00 1.870±0.01 5.646±1.79 5.630±1.87 2.592±0.84 6.032±2.47 3.690±0.00 4.582±0.92 3.287±1.73 18.629±10.64 51.938±10.33 6.538±2.23
ENST00000506388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528630 N/A 37.880±0.00 N/A N/A 18.043±0.00 N/A N/A 25.432±0.00 14.500±0.00 22.129±0.00 8.510±0.00 N/A N/A 32.778±0.00
ENST00000530146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530348 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.232±0.00 N/A N/A N/A N/A
ENST00000531345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.767±0.00 N/A N/A N/A
ENST00000532942 N/A N/A 3.095±0.00 4.676±1.20 9.619±0.00 2.961±0.00 0.881±0.00 10.277±0.00 N/A 5.476±0.00 N/A 13.675±0.00 29.458±0.00 6.531±0.00
ENST00000533898 N/A N/A 0.485±0.00 N/A N/A N/A 0.423±0.00 N/A N/A 1.794±0.00 N/A N/A N/A N/A
ENSG00000109911 ENST00000350638 1.339±0.00 0.516±0.00 N/A 3.159±1.19 1.039±0.00 2.000±0.00 1.575±0.59 1.326±0.97 1.174±0.31 0.942±0.47 1.046±0.30 2.254±0.97 2.798±0.49 2.174±0.39
ENST00000379163 N/A N/A 0.401±0.00 N/A N/A N/A 0.494±0.03 2.157±0.00 1.452±0.00 N/A N/A 1.109±0.00 N/A 0.417±0.00
ENST00000395934 0.649±0.00 1.882±0.00 N/A N/A 0.979±0.00 0.649±0.00 N/A 1.064±0.00 N/A 0.849±0.00 0.483±0.00 0.345±0.00 0.521±0.00 0.733±0.12
ENST00000474374 N/A N/A 1.172±0.00 2.757±0.00 2.490±0.00 2.159±1.31 N/A 1.633±0.00 2.497±0.00 2.921±0.00 0.365±0.00 1.935±0.00 1.500±0.07 N/A
ENSG00000170959 ENST00000303697 N/A 0.056±0.00 N/A N/A N/A N/A 0.019±0.00 0.098±0.00 N/A 0.095±0.00 N/A 0.018±0.00 0.006±0.00 N/A
ENST00000342355 N/A N/A N/A N/A 0.030±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.974±0.00
ENST00000406071 0.002±0.00 0.018±0.00 N/A 0.273±0.00 0.009±0.00 0.013±0.00 N/A 0.434±0.00 0.104±0.00 N/A 0.004±0.00 0.208±0.11 N/A N/A
ENST00000429306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437348 0.008±0.00 N/A N/A 0.178±0.00 0.028±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444572 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A 0.114±0.00 N/A N/A
ENST00000452803 N/A N/A 0.575±0.00 0.172±0.00 N/A 0.268±0.00 0.014±0.00 0.054±0.00 0.045±0.00 1.040±0.79 N/A N/A N/A N/A
ENST00000483396 N/A N/A 0.231±0.00 N/A N/A N/A N/A 0.273±0.00 0.020±0.00 N/A N/A N/A N/A N/A
ENST00000534021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597505 N/A N/A N/A 0.088±0.04 N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A
ENSG00000221338 ENST00000408411 N/A N/A N/A N/A N/A N/A N/A 1.173±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000228061 ENST00000429821 N/A N/A N/A 0.238±0.05 3.039±0.00 0.492±0.00 0.141±0.00 N/A 0.594±0.00 0.225±0.00 N/A N/A N/A N/A
ENST00000434742 N/A N/A N/A 0.111±0.00 N/A N/A 0.121±0.00 N/A 0.087±0.00 N/A 1.358±0.00 N/A N/A 0.044±0.00
ENST00000454509 N/A 0.215±0.00 0.100±0.00 0.433±0.12 0.041±0.00 0.097±0.00 0.040±0.00 N/A 0.555±0.00 N/A N/A 0.345±0.00 0.111±0.00 0.081±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027166 ENSMUST00000102555 0.951±0.47 N/A 5.265±1.04 3.747±1.25 1.034±0.33 0.625±0.00 0.929±0.37 1.089±0.17 4.245±3.74 1.118±0.07 1.485±0.35 3.362±2.92 5.331±1.15 2.666±0.81
ENSMUST00000124163 7.797±0.96 9.258±1.25 3.253±0.72 3.664±1.93 6.728±2.09 6.480±0.66 3.017±0.92 6.842±0.69 4.167±1.09 8.071±3.23 0.581±0.00 8.370±2.06 3.456±0.49 3.561±0.71
ENSMUST00000133569 N/A N/A N/A 1.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.729±0.00 4.222±0.00
ENSMUST00000151581 N/A N/A N/A 5.787±0.00 N/A N/A N/A N/A 1.992±0.00 N/A 1.328±0.00 N/A N/A N/A
ENSMUST00000155811 N/A N/A N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A 0.526±0.03 N/A 2.975±0.00 N/A
ENSMUSG00000027167 ENSMUST00000028588 N/A N/A 1.877±0.00 N/A 1.985±0.00 N/A N/A N/A N/A N/A 1.053±0.25 2.863±0.13 1.926±0.82 N/A
ENSMUST00000122965 3.092±0.56 2.818±1.00 2.415±0.16 3.448±2.28 2.484±1.02 2.565±0.48 1.451±0.31 2.134±0.24 3.300±0.99 2.421±0.27 0.682±0.23 3.480±1.88 1.245±0.64 1.946±0.86
ENSMUST00000148441 N/A 9.826±0.00 N/A 13.705±0.00 4.418±1.50 3.004±0.36 N/A N/A 4.268±0.97 3.194±0.00 N/A 8.239±3.90 N/A 10.865±0.00
ENSMUST00000152272 N/A N/A 2.390±0.00 N/A N/A N/A 1.574±0.00 N/A 4.964±0.76 N/A N/A N/A N/A 1.441±0.84
ENSMUSG00000042670 ENSMUST00000037499 13.427±1.69 4.087±0.79 26.047±3.04 15.733±7.23 10.835±3.90 6.258±1.05 20.123±5.03 13.122±2.79 16.172±6.21 7.122±1.14 30.488±8.98 7.748±6.70 11.379±3.94 36.491±11.04
ENSMUSG00000074981 ENSMUST00000037284 N/A N/A N/A 0.388±0.03 N/A N/A N/A N/A N/A N/A N/A 0.803±0.29 N/A N/A
ENSMUST00000122388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.068±4.11
ENSMUST00000148101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.053±0.00 N/A N/A
ENSMUST00000152776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.070±0.06 N/A N/A
ENSMUSG00000080859 ENSMUST00000119438 N/A N/A N/A 21.190±0.00 N/A N/A N/A N/A 60.645±0.58 N/A N/A N/A N/A N/A
ENSMUSG00000084870 ENSMUST00000123441 N/A N/A 0.058±0.00 0.059±0.02 0.148±0.02 N/A N/A N/A 0.124±0.04 N/A 0.109±0.00 0.072±0.00 0.090±0.03 0.239±0.20
ENSMUSG00000086029 ENSMUST00000126948 N/A N/A 0.015±0.00 0.062±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.090±0.00
ENSMUST00000149133 N/A N/A N/A 0.043±0.03 N/A 0.067±0.00 N/A N/A 0.010±0.00 N/A N/A N/A N/A 0.044±0.02
ENSMUSG00000093363 ENSMUST00000175622 3318.700±0.00 2507.880±0.00 62.965±21.46 33.157±24.51 N/A N/A N/A 908.488±3.65 12.915±5.00 836.204±0.00 N/A 1373.724±1118.62 20.337±6.08 975.234±55.95

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