C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007US_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1202 VISTA 9606 1:164334904-164936237
GeneTranscriptPositionBiotype
ENSG00000207082 (RNU6-171P)
RNA, U6 small nuclear 171, pseudogene 		ENST00000384354 (RNU6-171P-201) 164639565-164639671 snRNA
ENSG00000213070 (HMGB3P6)
high mobility group box 3 pseudogene 6 		ENST00000444896 (HMGB3P6-001) 164356767-164357364 processed_pseudogene
ENSG00000225487 (RP11-403P14.1)
 ENST00000440329 (RP11-403P14.1-001) 164921318-164921629 processed_pseudogene
ENSG00000233693 (RP11-506O24.1)
 ENST00000421530 (RP11-506O24.1-001) 164769116-164774641 antisense
ENSG00000269887 (RP11-477H21.2)
 ENST00000602747 (RP11-477H21.2-001) 164680085-164680799 sense_intronic
ENSG00000271917 (RP11-506O24.2)
 ENST00000607752 (RP11-506O24.2-001) 164828436-164829952 sense_intronic
ENSG00000274155 (AL391001.1)
 ENST00000611960 (AL391001.1-201) 164589509-164589579 miRNA
ENSG00000276359 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000619303 (Metazoa_SRP.1-367) 164703026-164703309 misc_RNA
ENSG00000277116 (AL391001.2)
 ENST00000613055 (AL391001.2-201) 164675324-164675424 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007US_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1202 VISTA 10090 1:168057093-168658535
GeneTranscriptPositionBiotype
ENSMUSG00000093538 (Gm20711)
predicted gene 20711 		ENSMUST00000177351 (Gm20711-001) 168115244-168122465 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007US_0001ENSG00000207082ENST00000384354ENSG00000213070ENST00000444896ENSG00000225487ENST00000440329ENSG00000233693ENST00000421530ENSG00000269887ENST00000602747ENSG00000271917ENST00000607752ENSG00000274155ENST00000611960ENSG00000276359ENST00000619303ENSG00000277116ENST00000613055CIL_0007US_0002ENSMUSG00000093538ENSMUST00000177351
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007US_0001ENSG00000207082ENST00000384354ENSG00000213070ENST00000444896ENSG00000225487ENST00000440329ENSG00000233693ENST00000421530ENSG00000269887ENST00000602747ENSG00000271917ENST00000607752ENSG00000274155ENST00000611960ENSG00000276359ENST00000619303ENSG00000277116ENST00000613055CIL_0007US_0002ENSMUSG00000093538ENSMUST00000177351
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000207082 ENST00000384354 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213070 ENST00000444896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.01 0.023±0.00
ENSG00000225487 ENST00000440329 0.049±0.00 N/A N/A N/A N/A 0.048±0.00 N/A 0.103±0.00 0.046±0.00 N/A N/A 1.798±0.00 N/A N/A
ENSG00000233693 ENST00000421530 N/A N/A 0.234±0.00 0.211±0.00 N/A 0.084±0.00 0.058±0.00 0.038±0.00 N/A N/A N/A 0.103±0.09 N/A 0.046±0.00
ENSG00000269887 ENST00000602747 0.341±0.00 0.308±0.00 2.905±0.00 0.587±0.41 1.804±1.31 1.746±1.33 0.711±0.49 0.910±0.77 1.588±1.47 0.681±0.38 0.225±0.00 1.226±1.43 0.248±0.02 1.413±0.80
ENSG00000271917 ENST00000607752 0.033±0.00 0.043±0.00 0.365±0.00 0.057±0.03 0.201±0.19 1.035±0.00 0.127±0.04 0.018±0.00 0.379±0.00 0.062±0.04 N/A 0.165±0.19 0.019±0.00 N/A
ENSG00000274155 ENST00000611960 N/A N/A N/A N/A N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000276359 ENST00000619303 N/A N/A N/A N/A N/A N/A N/A 0.807±0.34 N/A N/A 1.328±0.00 N/A N/A N/A
ENSG00000277116 ENST00000613055 N/A N/A N/A 0.433±0.00 N/A N/A 0.819±0.00 N/A N/A N/A 109.574±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000093538 ENSMUST00000177351 N/A N/A 0.301±0.00 0.069±0.00 N/A N/A N/A N/A 0.056±0.00 N/A 0.143±0.00 0.317±0.19 N/A 0.244±0.08

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