C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007VH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs307 VISTA 9606 9:16410538-17011186
GeneTranscriptPositionBiotype
ENSG00000230694 (RP11-62F24.1)
 ENST00000439447 (RP11-62F24.1-001) 16625676-16626390 antisense
ENSG00000231756 (RP11-183I6.2)
 ENST00000430640 (RP11-183I6.2-001) 16473188-16476237 antisense
ENSG00000233551 (LSM1P1)
LSM1, U6 small nuclear RNA associated pseudogene 1 		ENST00000438629 (LSM1P1-001) 16775573-16775845 processed_pseudogene
ENSG00000234779 (RP11-62F24.2)
 ENST00000450445 (RP11-62F24.2-001) 16726814-16727524 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007VH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs307 VISTA 10090 4:84229017-84829746
GeneTranscriptPositionBiotype
ENSMUSG00000028487 (Bnc2)
basonuclin 2 		ENSMUST00000102820 (Bnc2-002) 84275095-84675034 protein_coding
ENSMUST00000107198 (Bnc2-007) 84275229-84675067 protein_coding
ENSMUST00000123276 (Bnc2-003) 84388683-84674999 retained_intron
ENSMUST00000175756 (Bnc2-013) 84391052-84675078 protein_coding
ENSMUST00000175757 (Bnc2-022) 84293238-84507739 processed_transcript
ENSMUST00000175800 (Bnc2-005) 84293214-84674996 protein_coding
ENSMUST00000175969 (Bnc2-017) 84293604-84674997 protein_coding
ENSMUST00000176264 (Bnc2-021) 84411179-84523693 processed_transcript
ENSMUST00000176346 (Bnc2-015) 84390927-84674997 nonsense_mediated_decay
ENSMUST00000176370 (Bnc2-014) 84546212-84674999 protein_coding
ENSMUST00000176418 (Bnc2-006) 84293214-84674996 protein_coding
ENSMUST00000176476 (Bnc2-019) 84293635-84533396 processed_transcript
ENSMUST00000176601 (Bnc2-009) 84276444-84291868 protein_coding
ENSMUST00000176612 (Bnc2-004) 84275352-84675275 protein_coding
ENSMUST00000176691 (Bnc2-001) 84275610-84675086 protein_coding
ENSMUST00000176702 (Bnc2-011) 84276245-84292146 protein_coding
ENSMUST00000176947 (Bnc2-016) 84293577-84675027 protein_coding
ENSMUST00000176971 (Bnc2-012) 84275380-84291757 protein_coding
ENSMUST00000176998 (Bnc2-008) 84276444-84291868 protein_coding
ENSMUST00000177040 (Bnc2-020) 84411154-84546290 protein_coding
ENSMUST00000177256 (Bnc2-018) 84390959-84546619 processed_transcript
ENSMUST00000177277 (Bnc2-010) 84276159-84291930 protein_coding
ENSMUSG00000081775 (Gm12420)
predicted gene 12420 		ENSMUST00000119869 (Gm12420-001) 84697863-84698910 processed_pseudogene
ENSMUSG00000083743 (Gm12421)
predicted gene 12421 		ENSMUST00000119071 (Gm12421-001) 84428818-84429124 processed_pseudogene
ENSMUSG00000086413 (Gm12415)
predicted gene 12415 		ENSMUST00000141637 (Gm12415-001) 84741475-84742291 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VH_0001ENSG00000230694ENST00000439447ENSG00000231756ENST00000430640ENSG00000233551ENST00000438629ENSG00000234779ENST00000450445CIL_0007VH_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VH_0001ENSG00000230694ENST00000439447ENSG00000231756ENST00000430640ENSG00000233551ENST00000438629ENSG00000234779ENST00000450445CIL_0007VH_0002ENSMUSG00000028487ENSMUST00000102820ENSMUST00000107198ENSMUST00000175756ENSMUST00000175757ENSMUST00000175800ENSMUST00000175969ENSMUST00000176346ENSMUST00000176418ENSMUST00000176476ENSMUST00000176612ENSMUST00000176691ENSMUST00000176702ENSMUST00000176947ENSMUST00000176971ENSMUST00000177256ENSMUSG00000081775ENSMUST00000119869ENSMUSG00000083743ENSMUST00000119071ENSMUSG00000086413ENSMUST00000141637
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000230694 ENST00000439447 N/A N/A N/A N/A N/A N/A N/A 0.294±0.00 N/A 0.340±0.00 N/A N/A N/A N/A
ENSG00000231756 ENST00000430640 N/A 0.184±0.00 N/A N/A N/A 0.549±0.00 N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENSG00000233551 ENST00000438629 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A N/A N/A 0.232±0.16 N/A N/A
ENSG00000234779 ENST00000450445 0.837±0.00 0.173±0.00 N/A 0.329±0.00 1.143±0.12 0.548±0.00 N/A 1.109±0.00 1.063±0.00 0.734±0.00 0.052±0.00 0.357±0.00 0.663±0.22 1.660±1.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028487 ENSMUST00000102820 N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A 0.045±0.00 N/A 0.103±0.00 N/A N/A N/A
ENSMUST00000107198 2.360±1.13 N/A 1.768±0.29 0.666±0.00 N/A N/A N/A 1.630±0.17 0.048±0.00 N/A N/A 3.079±1.51 0.276±0.00 0.635±0.00
ENSMUST00000123276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175756 N/A N/A N/A N/A N/A 2.739±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175757 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A 0.124±0.00 N/A N/A N/A
ENSMUST00000175800 N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A 0.058±0.00 N/A N/A 15.205±0.00 N/A N/A
ENSMUST00000175969 N/A 0.722±0.00 N/A 0.380±0.00 N/A 2.023±0.40 0.167±0.00 N/A N/A N/A N/A 23.172±1.42 0.095±0.00 N/A
ENSMUST00000176264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176346 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.273±0.00 N/A N/A N/A
ENSMUST00000176370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176418 N/A N/A N/A N/A N/A 0.720±0.03 N/A N/A 0.049±0.01 N/A N/A N/A 0.213±0.05 N/A
ENSMUST00000176476 N/A 1.840±0.72 N/A N/A 3.669±0.00 4.006±0.58 N/A N/A 0.479±0.00 N/A N/A 29.905±5.43 N/A N/A
ENSMUST00000176601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176612 N/A N/A N/A N/A N/A 0.170±0.00 0.069±0.00 N/A N/A 0.352±0.00 N/A 1.714±0.10 N/A N/A
ENSMUST00000176691 2.143±0.66 0.203±0.03 N/A N/A 1.100±0.37 0.576±0.13 0.144±0.05 4.686±0.80 0.036±0.02 0.831±0.14 0.123±0.06 4.932±1.27 N/A N/A
ENSMUST00000176702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.19 N/A
ENSMUST00000176947 N/A 0.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.419±4.43 N/A N/A
ENSMUST00000176971 5.334±2.33 1.197±0.34 N/A N/A 1.773±0.23 1.026±0.19 0.187±0.00 5.533±0.96 0.038±0.00 1.312±0.18 0.099±0.00 14.789±4.00 0.069±0.00 1.855±0.18
ENSMUST00000176998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177256 N/A 0.852±0.00 N/A N/A N/A N/A 0.442±0.00 N/A 0.247±0.00 N/A N/A N/A 0.696±0.00 N/A
ENSMUST00000177277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081775 ENSMUST00000119869 N/A N/A 0.032±0.00 N/A N/A 0.062±0.00 N/A N/A 0.026±0.00 0.035±0.00 N/A N/A N/A 0.016±0.00
ENSMUSG00000083743 ENSMUST00000119071 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A 0.442±0.00 0.262±0.00 0.221±0.00
ENSMUSG00000086413 ENSMUST00000141637 N/A N/A N/A N/A 0.255±0.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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