C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007W1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1862 VISTA 9606 1:180851913-181454518
GeneTranscriptPositionBiotype
ENSG00000135823 (STX6)
syntaxin 6 		ENST00000258301 (STX6-001) 180972725-181022911 protein_coding
ENST00000469135 (STX6-002) 180973039-180989377 processed_transcript
ENST00000496476 (STX6-003) 180987725-180988301 processed_transcript
ENST00000542060 (STX6-201) 180972712-181023121 protein_coding
ENSG00000143324 (XPR1)
xenotropic and polytropic retrovirus receptor 1 		ENST00000367589 (XPR1-002) 180632032-180886126 protein_coding
ENST00000367590 (XPR1-001) 180632004-180890251 protein_coding
ENST00000464817 (XPR1-004) 180863764-180878290 processed_transcript
ENST00000467345 (XPR1-005) 180887572-180888448 processed_transcript
ENST00000498177 (XPR1-003) 180836652-180874055 processed_transcript
ENSG00000153029 (MR1)
major histocompatibility complex, class I-related 		ENST00000282990 (MR1-002) 181034003-181056553 protein_coding
ENST00000367578 (MR1-004) 181034022-181051273 retained_intron
ENST00000367579 (MR1-003) 181034003-181055523 protein_coding
ENST00000367580 (MR1-001) 181034003-181061938 protein_coding
ENST00000434571 (MR1-201) 181033425-181061938 protein_coding
ENST00000438435 (MR1-005) 181034010-181055284 processed_transcript
ENST00000486453 (MR1-006) 181033972-181049697 retained_intron
ENST00000614012 (MR1-202) 181033425-181061938 protein_coding
ENST00000617803 (MR1-203) 181033425-181061938 protein_coding
ENSG00000162783 (IER5)
immediate early response 5 		ENST00000367577 (IER5-001) 181088712-181092899 protein_coding
ENSG00000179452 (GM140)
uncharacterized LOC100287948 		ENST00000319701 (GM140-001) 181236388-181238604 lincRNA
ENSG00000198216 (CACNA1E)
calcium channel, voltage-dependent, R type, alpha 1E subunit 		ENST00000357570 (CACNA1E-201) 181483745-181798959 protein_coding
ENST00000358338 (CACNA1E-202) 181483745-181806778 protein_coding
ENST00000360108 (CACNA1E-006) 181483738-181798912 protein_coding
ENST00000367567 (CACNA1E-203) 181483745-181806778 protein_coding
ENST00000367570 (CACNA1E-001) 181483580-181801580 protein_coding
ENST00000367573 (CACNA1E-003) 181483745-181798959 protein_coding
ENST00000524607 (CACNA1E-004) 181413102-181716129 protein_coding
ENST00000533229 (CACNA1E-005) 181483311-181652094 retained_intron
ENST00000621551 (CACNA1E-204) 181483745-181806778 protein_coding
ENST00000621791 (CACNA1E-002) 181483580-181808084 protein_coding
ENSG00000225359 (RP11-540K16.2)
 ENST00000456771 (RP11-540K16.2-001) 181190471-181191149 lincRNA
ENSG00000225857 (RP11-46A10.2)
 ENST00000422858 (RP11-46A10.2-001) 180907801-180908942 lincRNA
ENST00000434447 (RP11-46A10.2-002) 180906651-180909166 lincRNA
ENSG00000237292 (RP11-540K16.1)
 ENST00000435023 (RP11-540K16.1-001) 181174484-181182208 lincRNA
ENST00000438428 (RP11-540K16.1-002) 181175337-181182207 lincRNA
ENSG00000251520 (RP11-46A10.6)
 ENST00000503142 (RP11-46A10.6-001) 180964511-180965909 unprocessed_pseudogene
ENSG00000270711 (RP11-46A10.8)
 ENST00000604674 (RP11-46A10.8-001) 180970837-180971247 processed_pseudogene
CIL_0007W1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1862 VISTA 10090 1:154738612-155340657
GeneTranscriptPositionBiotype
ENSMUSG00000004110 (Cacna1e)
calcium channel, voltage-dependent, R type, alpha 1E subunit 		ENSMUST00000004214 (Cacna1e-201) 154392519-154725920 protein_coding
ENSMUST00000186256 (Cacna1e-005) 154882166-154884024 retained_intron
ENSMUST00000187541 (Cacna1e-001) 154390731-154726356 protein_coding
ENSMUST00000188321 (Cacna1e-003) 154699089-154884501 retained_intron
ENSMUST00000188384 (Cacna1e-004) 154469052-154476696 retained_intron
ENSMUST00000188965 (Cacna1e-002) 154481075-154816941 retained_intron
ENSMUSG00000026469 (Xpr1)
xenotropic and polytropic retrovirus receptor 1 		ENSMUST00000027741 (Xpr1-001) 155275701-155417309 protein_coding
ENSMUST00000111774 (Xpr1-002) 155282668-155417415 protein_coding
ENSMUST00000111775 (Xpr1-003) 155278982-155417407 protein_coding
ENSMUST00000129271 (Xpr1-004) 155322772-155417395 retained_intron
ENSMUST00000139925 (Xpr1-006) 155282183-155309642 retained_intron
ENSMUST00000143529 (Xpr1-005) 155384176-155384662 processed_transcript
ENSMUSG00000026470 (Stx6)
syntaxin 6 		ENSMUST00000027743 (Stx6-201) 155158703-155203517 protein_coding
ENSMUSG00000026471 (Mr1)
major histocompatibility complex, class I-related 		ENSMUST00000027744 (Mr1-001) 155127878-155146783 protein_coding
ENSMUSG00000033722 (BC034090)
cDNA sequence BC034090 		ENSMUST00000035914 (BC034090-009) 155212473-155232740 protein_coding
ENSMUST00000185937 (BC034090-006) 155212471-155213981 retained_intron
ENSMUST00000186082 (BC034090-002) 155224911-155240906 retained_intron
ENSMUST00000186156 (BC034090-001) 155212471-155244444 protein_coding
ENSMUST00000186551 (BC034090-005) 155218271-155225174 processed_transcript
ENSMUST00000187096 (BC034090-003) 155226040-155232911 protein_coding
ENSMUST00000187781 (BC034090-007) 155225690-155229894 processed_transcript
ENSMUST00000188492 (BC034090-008) 155229114-155231904 retained_intron
ENSMUST00000190976 (BC034090-004) 155217521-155225425 processed_transcript
ENSMUSG00000056708 (Ier5)
immediate early response 5 		ENSMUST00000055322 (Ier5-001) 155096361-155099636 protein_coding
ENSMUSG00000093286 (Gm22569)
predicted gene, 22569 		ENSMUST00000175545 (Gm22569-201) 155315966-155316089 miRNA
ENSMUSG00000096950 (Gm9530)
predicted gene 9530 		ENSMUST00000181160 (Gm9530-001) 155063447-155083266 lincRNA
ENSMUSG00000101880 (RP23-76L21.2)
predicted gene 29282 		ENSMUST00000190720 (RP23-76L21.2-001) 155011332-155057179 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007W1_0001ENSG00000135823ENST00000258301ENST00000469135ENST00000496476ENST00000542060ENSG00000143324ENST00000367589ENST00000367590ENST00000464817ENST00000467345ENST00000498177ENSG00000153029ENST00000282990ENST00000367578ENST00000367579ENST00000367580ENST00000434571ENST00000438435ENST00000486453ENST00000614012ENST00000617803ENSG00000162783ENST00000367577ENSG00000179452ENST00000319701ENSG00000198216ENST00000357570ENST00000358338ENST00000360108ENST00000367567ENST00000367570ENST00000367573ENST00000524607ENST00000533229ENST00000621551ENST00000621791ENSG00000225359ENST00000456771ENSG00000225857ENST00000422858ENST00000434447ENSG00000237292ENST00000435023ENST00000438428ENSG00000251520ENST00000503142ENSG00000270711ENST00000604674CIL_0007W1_0002ENSMUSG00000004110ENSMUST00000004214ENSMUST00000186256ENSMUST00000187541ENSMUST00000188321ENSMUST00000188384ENSMUST00000188965ENSMUSG00000026469ENSMUST00000027741ENSMUST00000111774ENSMUST00000111775ENSMUST00000129271ENSMUST00000139925ENSMUST00000143529ENSMUSG00000026470ENSMUST00000027743ENSMUSG00000026471ENSMUST00000027744ENSMUSG00000033722ENSMUST00000035914ENSMUST00000185937ENSMUST00000186082ENSMUST00000186156ENSMUST00000186551ENSMUST00000187096ENSMUST00000187781ENSMUST00000188492ENSMUST00000190976ENSMUSG00000056708ENSMUST00000055322ENSMUSG00000093286ENSMUST00000175545ENSMUSG00000096950ENSMUST00000181160ENSMUSG00000101880ENSMUST00000190720
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007W1_0001ENSG00000135823ENST00000258301ENST00000469135ENST00000542060ENSG00000143324ENST00000367589ENST00000367590ENSG00000153029ENST00000282990ENST00000367578ENST00000367579ENST00000367580ENST00000434571ENST00000438435ENST00000614012ENST00000617803ENSG00000162783ENST00000367577ENSG00000179452ENST00000319701ENSG00000198216ENST00000357570ENST00000358338ENST00000360108ENST00000367567ENST00000367570ENST00000367573ENST00000524607ENST00000533229ENST00000621551ENST00000621791ENSG00000225359ENST00000456771ENSG00000225857ENST00000422858ENST00000434447ENSG00000237292ENST00000435023ENSG00000251520ENST00000503142ENSG00000270711ENST00000604674CIL_0007W1_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135823 ENST00000258301 8.576±0.00 6.265±0.00 1.052±0.00 7.827±0.74 5.640±2.85 4.807±1.74 1.431±0.82 2.684±2.21 1.879±1.04 5.332±1.78 2.010±0.00 7.050±2.15 5.951±0.96 5.171±0.11
ENST00000469135 N/A N/A 0.777±0.00 N/A 1.449±0.00 0.924±0.00 0.466±0.00 0.384±0.00 1.223±0.00 1.059±0.06 0.457±0.00 3.279±0.00 N/A N/A
ENST00000496476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542060 N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 1.008±0.00 N/A N/A N/A 1.770±0.00
ENSG00000143324 ENST00000367589 4.569±0.00 2.205±0.00 3.171±0.00 1.352±0.00 1.917±0.25 1.882±0.95 2.635±0.00 2.391±1.93 1.427±0.63 3.994±1.23 N/A 3.609±1.03 4.975±0.88 7.001±1.52
ENST00000367590 1.485±0.00 1.226±0.00 1.142±0.00 3.646±0.02 1.494±0.06 1.013±0.17 5.417±3.18 1.593±1.28 0.698±0.53 1.374±0.44 0.682±0.52 1.638±0.28 1.617±0.09 3.064±0.56
ENST00000464817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153029 ENST00000282990 1.116±0.00 N/A 0.595±0.00 0.674±0.00 1.202±0.16 1.405±0.00 0.456±0.10 1.417±0.75 1.218±0.73 2.309±0.49 0.362±0.00 2.618±0.70 5.238±0.82 1.164±0.00
ENST00000367578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00
ENST00000367579 N/A N/A N/A N/A N/A N/A N/A N/A 1.035±0.00 N/A N/A N/A 3.088±0.22 N/A
ENST00000367580 0.852±0.00 N/A 0.353±0.00 0.659±0.00 0.325±0.00 0.510±0.15 0.542±0.00 1.615±0.88 0.700±0.47 1.283±0.74 N/A 1.462±0.55 1.284±0.14 0.772±0.49
ENST00000434571 N/A 0.660±0.00 N/A 0.258±0.00 N/A N/A N/A N/A 0.262±0.00 0.655±0.00 0.161±0.00 N/A N/A 0.092±0.00
ENST00000438435 N/A N/A 2.573±0.00 0.838±0.00 3.269±0.00 2.352±0.00 0.523±0.00 N/A 4.278±0.00 3.857±0.00 N/A 5.150±0.00 N/A N/A
ENST00000486453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614012 N/A N/A N/A N/A 0.842±0.00 N/A N/A N/A N/A N/A N/A 1.116±0.00 N/A N/A
ENST00000617803 0.812±0.00 2.120±0.00 0.341±0.00 0.375±0.00 1.101±0.00 0.503±0.00 0.169±0.00 N/A N/A N/A 0.470±0.00 2.147±0.00 0.392±0.00 0.591±0.00
ENSG00000162783 ENST00000367577 1.821±0.00 7.743±0.00 0.540±0.00 2.435±0.09 3.387±0.18 2.463±0.33 3.161±2.32 1.287±0.90 1.086±0.37 8.236±4.03 10.223±7.30 6.146±4.97 10.683±0.94 3.465±0.12
ENSG00000179452 ENST00000319701 N/A 0.467±0.00 N/A 0.454±0.38 N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A 0.155±0.00
ENSG00000198216 ENST00000357570 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A
ENST00000358338 0.006±0.00 0.013±0.00 0.090±0.00 2.259±0.00 N/A 0.042±0.02 0.009±0.00 N/A N/A 0.008±0.00 N/A 0.007±0.00 N/A N/A
ENST00000360108 N/A N/A 0.165±0.00 N/A 0.141±0.00 N/A 0.073±0.00 N/A N/A N/A 0.005±0.00 0.064±0.05 0.007±0.00 N/A
ENST00000367567 0.001±0.00 N/A N/A 2.424±0.96 N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 N/A N/A
ENST00000367570 N/A N/A 0.095±0.00 N/A 0.054±0.05 N/A 0.025±0.00 0.335±0.00 N/A N/A N/A 0.014±0.01 N/A 0.248±0.02
ENST00000367573 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A
ENST00000524607 N/A 0.032±0.00 0.916±0.00 N/A 0.038±0.00 N/A N/A N/A N/A N/A 0.258±0.00 N/A 0.018±0.00 N/A
ENST00000533229 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A
ENST00000621551 N/A N/A N/A N/A N/A N/A 0.015±0.00 0.180±0.00 N/A N/A N/A N/A N/A 0.037±0.00
ENST00000621791 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A
ENSG00000225359 ENST00000456771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00
ENSG00000225857 ENST00000422858 N/A 0.044±0.00 N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A 0.076±0.00 N/A 0.095±0.00
ENST00000434447 N/A N/A N/A 0.301±0.00 N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A 0.264±0.12
ENSG00000237292 ENST00000435023 0.340±0.00 0.539±0.00 N/A 0.283±0.00 0.571±0.00 0.035±0.00 0.066±0.00 0.146±0.00 0.062±0.00 0.134±0.00 N/A 0.148±0.00 0.117±0.00 0.066±0.00
ENST00000438428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251520 ENST00000503142 N/A 0.127±0.00 N/A 0.171±0.00 0.892±0.83 0.062±0.03 0.216±0.10 N/A N/A 0.063±0.00 N/A 0.188±0.10 0.083±0.02 0.060±0.00
ENSG00000270711 ENST00000604674 N/A 0.195±0.00 N/A N/A N/A N/A 0.115±0.03 N/A 1.158±0.00 N/A N/A 0.194±0.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004110 ENSMUST00000004214 0.262±0.06 0.026±0.01 N/A N/A 0.169±0.03 0.175±0.05 0.023±0.00 0.055±0.00 0.018±0.01 0.066±0.00 0.005±0.00 0.232±0.07 0.015±0.01 0.075±0.04
ENSMUST00000186256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187541 0.602±0.00 0.039±0.00 0.015±0.00 4.260±2.05 0.459±0.00 N/A 0.015±0.00 0.050±0.03 0.023±0.01 0.161±0.04 0.008±0.00 0.193±0.09 0.013±0.00 N/A
ENSMUST00000188321 0.273±0.00 0.155±0.05 N/A N/A 0.751±0.00 N/A 0.084±0.01 0.155±0.05 0.124±0.06 N/A 0.021±0.00 0.434±0.00 0.017±0.00 N/A
ENSMUST00000188384 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A 0.212±0.00
ENSMUST00000188965 N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000026469 ENSMUST00000027741 3.191±0.60 4.527±1.83 5.011±0.61 17.372±8.14 3.291±1.92 8.078±2.31 4.521±0.27 10.091±1.77 2.160±0.96 3.967±1.33 12.538±1.02 4.201±1.95 3.395±1.38 3.914±1.57
ENSMUST00000111774 2.330±0.56 3.691±1.12 N/A N/A 2.644±0.29 5.546±0.00 N/A 3.928±0.00 1.872±0.75 2.755±0.30 N/A 4.113±0.70 N/A 10.940±0.50
ENSMUST00000111775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.432±0.00 3.278±1.63
ENSMUST00000129271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026470 ENSMUST00000027743 21.484±5.14 31.250±2.48 15.842±4.07 41.197±9.41 22.651±8.09 17.087±1.01 5.648±1.10 15.159±1.82 4.944±1.23 30.564±1.17 3.528±0.32 31.912±6.79 19.453±9.96 6.884±0.24
ENSMUSG00000026471 ENSMUST00000027744 5.090±0.43 5.161±0.94 4.700±0.42 0.332±0.12 3.610±1.68 0.987±0.17 1.496±0.21 1.326±0.38 0.631±0.38 4.750±1.91 4.159±0.73 5.050±1.32 0.629±0.39 0.464±0.19
ENSMUSG00000033722 ENSMUST00000035914 1.138±0.35 2.560±0.65 1.333±0.04 1.432±0.10 0.566±0.17 0.639±0.00 2.854±0.77 7.002±2.37 0.073±0.04 1.012±0.34 0.056±0.02 4.356±1.66 2.364±0.77 0.769±0.55
ENSMUST00000185937 N/A N/A N/A 0.996±0.14 N/A 1.384±0.08 3.629±0.47 13.119±1.63 0.146±0.03 N/A 0.147±0.05 3.119±0.94 0.348±0.00 0.127±0.00
ENSMUST00000186082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186156 1.238±0.88 4.276±3.97 2.683±0.08 0.692±0.21 1.310±0.45 1.246±0.43 3.504±0.13 12.129±3.07 0.073±0.03 1.104±0.52 0.102±0.06 3.504±1.34 2.422±0.86 0.170±0.08
ENSMUST00000186551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A
ENSMUST00000187096 N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.288±0.03 N/A N/A N/A
ENSMUST00000187781 N/A N/A N/A N/A N/A N/A N/A N/A 0.163±0.11 N/A 0.108±0.00 N/A N/A 0.899±0.38
ENSMUST00000188492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.508±0.42
ENSMUST00000190976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENSMUSG00000056708 ENSMUST00000055322 10.831±5.62 10.236±2.56 17.620±5.22 13.249±5.61 24.098±13.61 22.104±3.18 6.107±0.54 6.096±0.42 3.444±2.38 26.356±1.78 2.565±0.42 12.324±5.04 6.368±0.97 0.784±0.00
ENSMUSG00000093286 ENSMUST00000175545 N/A N/A 51.673±0.00 6.142±0.00 N/A N/A N/A N/A 21.789±7.88 N/A N/A 9.400±0.00 N/A N/A
ENSMUSG00000096950 ENSMUST00000181160 0.041±0.03 0.213±0.13 0.135±0.03 0.057±0.02 0.108±0.04 0.134±0.03 0.016±0.01 0.057±0.03 0.071±0.03 0.180±0.03 0.027±0.01 0.265±0.14 0.152±0.12 0.693±0.34
ENSMUSG00000101880 ENSMUST00000190720 N/A N/A 0.050±0.00 0.299±0.00 0.314±0.00 0.661±0.00 N/A 0.107±0.00 N/A 0.129±0.00 N/A N/A 0.177±0.00 0.162±0.06

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