C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007XO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1244 VISTA 9606 2:66524969-67125769
GeneTranscriptPositionBiotype
ENSG00000143995 (MEIS1)
Meis homeobox 1 		ENST00000272369 (MEIS1-001) 66435400-66573869 protein_coding
ENST00000398506 (MEIS1-003) 66437393-66573329 protein_coding
ENST00000409517 (MEIS1-013) 66461798-66572454 processed_transcript
ENST00000409622 (MEIS1-010) 66440097-66512191 processed_transcript
ENST00000437869 (MEIS1-006) 66440678-66464220 protein_coding
ENST00000450027 (MEIS1-014) 66508927-66568745 processed_transcript
ENST00000466811 (MEIS1-011) 66440707-66454735 processed_transcript
ENST00000475239 (MEIS1-012) 66445193-66567500 processed_transcript
ENST00000488550 (MEIS1-002) 66435558-66572454 protein_coding
ENST00000490726 (MEIS1-005) 66436917-66441440 processed_transcript
ENST00000491706 (MEIS1-008) 66435169-66443772 retained_intron
ENST00000495021 (MEIS1-016) 66439321-66572759 protein_coding
ENST00000496248 (MEIS1-009) 66433452-66439967 processed_transcript
ENST00000498705 (MEIS1-007) 66442775-66512294 retained_intron
ENST00000542964 (MEIS1-015) 66496026-66571251 processed_transcript
ENST00000560281 (MEIS1-019) 66435133-66568536 protein_coding
ENST00000606455 (MEIS1-018) 66442965-66568714 processed_transcript
ENSG00000223859 (AC007403.3)
 ENST00000427579 (AC007403.3-001) 67040546-67041966 lincRNA
ENSG00000224071 (AC009474.1)
 ENST00000455096 (AC009474.1-001) 66820684-66822570 processed_pseudogene
ENSG00000230355 (AC009474.2)
 ENST00000451383 (AC009474.2-001) 66881087-66881222 processed_pseudogene
ENSG00000230525 (AC007403.2)
 ENST00000411701 (AC007403.2-001) 66921694-66958920 lincRNA
ENST00000426260 (AC007403.2-002) 66904436-66971462 lincRNA
ENSG00000232046 (AC007392.3)
 ENST00000412944 (AC007392.3-006) 66691446-66730157 lincRNA
ENST00000423168 (AC007392.3-002) 66689868-66695581 lincRNA
ENST00000428590 (AC007392.3-003) 66691438-66715630 lincRNA
ENST00000433396 (AC007392.3-001) 66574030-66695505 lincRNA
ENST00000435389 (AC007392.3-005) 66691435-66695583 lincRNA
ENSG00000232688 (AC007403.1)
 ENST00000444266 (AC007403.1-001) 66921510-66922457 lincRNA
ENSG00000235885 (AC023115.2)
 ENST00000445514 (AC023115.2-006) 67213408-67244574 lincRNA
ENST00000450294 (AC023115.2-001) 67260803-67289394 lincRNA
ENST00000452716 (AC023115.2-002) 67086446-67296075 lincRNA
ENST00000593336 (AC023115.2-004) 67261066-67289370 lincRNA
ENST00000594329 (AC023115.2-005) 67087013-67257966 lincRNA
ENST00000598583 (AC023115.2-003) 67261066-67289238 lincRNA
ENST00000618608 (AC023115.2-007) 67252618-67261170 lincRNA
ENSG00000236780 (AC078941.1)
 ENST00000414404 (AC078941.1-002) 67175423-67215277 lincRNA
ENST00000433133 (AC078941.1-001) 67123357-67215319 lincRNA
ENST00000447453 (AC078941.1-003) 67124670-67177992 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007XO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1244 VISTA 10090 11:18304266-18905268
GeneTranscriptPositionBiotype
ENSMUSG00000020160 (Meis1)
Meis homeobox 1 		ENSMUST00000068264 (Meis1-001) 18880662-19018958 protein_coding
ENSMUST00000102878 (Meis1-004) 18880428-19018714 nonsense_mediated_decay
ENSMUST00000118661 (Meis1-006) 18880668-19012002 processed_transcript
ENSMUST00000125722 (Meis1-002) 18986774-19018922 retained_intron
ENSMUST00000137300 (Meis1-003) 19009784-19018922 retained_intron
ENSMUST00000144988 (Meis1-005) 18879817-19018985 protein_coding
ENSMUST00000177357 (Meis1-007) 18881360-19016289 nonsense_mediated_decay
ENSMUST00000177417 (Meis1-008) 18880675-19018714 protein_coding
ENSMUST00000185131 (Meis1-201) 18880428-19018969 protein_coding
ENSMUSG00000081101 (Gm12024)
predicted gene 12024 		ENSMUST00000118819 (Gm12024-001) 18577227-18578479 processed_pseudogene
ENSMUSG00000081302 (Gm12020)
predicted gene 12020 		ENSMUST00000119030 (Gm12020-001) 18325630-18327671 processed_pseudogene
ENSMUSG00000082852 (Gm12021)
predicted gene 12021 		ENSMUST00000121061 (Gm12021-001) 18508037-18509940 processed_pseudogene
ENSMUSG00000085675 (Gm12022)
predicted gene 12022 		ENSMUST00000143311 (Gm12022-001) 18467479-18493255 lincRNA
ENSMUSG00000085743 (8430419K02Rik)
RIKEN cDNA 8430419K02 gene 		ENSMUST00000128654 (8430419K02Rik-001) 18845851-18872155 lincRNA
ENSMUST00000133948 (8430419K02Rik-003) 18854043-18874309 processed_transcript
ENSMUST00000156831 (8430419K02Rik-002) 18853939-18860115 processed_transcript
ENSMUSG00000085806 (Gm12023)
predicted gene 12023 		ENSMUST00000145182 (Gm12023-001) 18595248-18710222 lincRNA
ENSMUSG00000099449 (RP23-18O23.1)
predicted gene 28401 		ENSMUST00000188856 (RP23-18O23.1-002) 18752653-18756757 lincRNA
ENSMUST00000190769 (RP23-18O23.1-001) 18752558-18756738 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XO_0001ENSG00000143995ENST00000272369ENST00000398506ENST00000409517ENST00000437869ENST00000488550ENST00000491706ENST00000495021ENST00000560281ENSG00000223859ENST00000427579ENSG00000224071ENST00000455096ENSG00000230355ENST00000451383ENSG00000230525ENST00000411701ENST00000426260ENSG00000232046ENST00000412944ENST00000423168ENST00000428590ENST00000433396ENST00000435389ENSG00000232688ENST00000444266ENSG00000235885ENST00000445514ENST00000450294ENST00000452716ENST00000593336ENST00000594329ENST00000598583ENST00000618608ENSG00000236780ENST00000414404ENST00000433133ENST00000447453CIL_0007XO_0002ENSMUSG00000020160ENSMUST00000068264ENSMUST00000102878ENSMUST00000118661ENSMUST00000144988ENSMUST00000177357ENSMUST00000177417ENSMUST00000185131ENSMUSG00000081101ENSMUST00000118819ENSMUSG00000081302ENSMUST00000119030ENSMUSG00000082852ENSMUST00000121061ENSMUSG00000085675ENSMUST00000143311ENSMUSG00000085743ENSMUST00000128654ENSMUST00000133948ENSMUST00000156831ENSMUSG00000085806ENSMUST00000145182ENSMUSG00000099449ENSMUST00000188856ENSMUST00000190769
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143995 ENST00000272369 N/A N/A N/A N/A N/A N/A 0.590±0.00 0.551±0.00 N/A N/A N/A N/A N/A N/A
ENST00000398506 N/A N/A N/A N/A N/A N/A N/A 0.399±0.00 N/A N/A N/A 5.419±0.00 0.572±0.03 N/A
ENST00000409517 0.519±0.00 2.229±0.00 N/A 1.159±0.08 1.504±0.00 9.132±0.00 2.554±0.00 2.737±0.00 0.525±0.00 3.120±0.00 0.869±0.00 1.221±0.00 2.366±1.18 3.875±2.75
ENST00000409622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437869 N/A N/A N/A N/A N/A N/A N/A 2.809±0.00 N/A N/A 1.583±0.00 N/A N/A N/A
ENST00000450027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488550 0.276±0.00 0.703±0.00 1.230±0.00 0.518±0.11 1.948±1.34 1.867±0.18 0.639±0.00 N/A 4.734±0.00 1.976±1.24 0.170±0.00 2.888±1.94 0.468±0.18 0.745±0.38
ENST00000490726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491706 N/A N/A 1.529±0.00 0.790±0.00 N/A N/A N/A N/A 11.898±0.00 N/A 0.666±0.00 3.572±0.00 5.442±0.00 N/A
ENST00000495021 0.809±0.00 1.208±0.00 N/A 1.289±0.00 1.714±0.57 5.831±2.03 1.683±0.68 N/A 2.744±2.22 2.213±0.44 0.234±0.00 10.526±9.49 2.166±0.35 3.321±2.00
ENST00000496248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560281 0.337±0.00 0.582±0.00 1.967±0.00 0.886±0.24 3.285±0.00 N/A 1.670±0.00 0.363±0.00 8.280±0.00 4.305±0.00 0.551±0.00 3.819±2.19 N/A 0.548±0.00
ENST00000606455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223859 ENST00000427579 N/A N/A N/A 0.040±0.00 N/A 0.034±0.00 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224071 ENST00000455096 N/A N/A N/A N/A N/A 0.239±0.00 N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A
ENSG00000230355 ENST00000451383 0.330±0.00 1.119±0.00 N/A 0.194±0.00 1.321±0.00 0.175±0.00 0.329±0.00 0.187±0.00 0.165±0.00 0.195±0.00 N/A 0.365±0.00 N/A N/A
ENSG00000230525 ENST00000411701 N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A 0.374±0.00 N/A 0.150±0.00 N/A 0.099±0.03
ENST00000426260 N/A N/A N/A N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A 0.125±0.12 N/A 0.216±0.00
ENSG00000232046 ENST00000412944 N/A N/A N/A 0.066±0.00 N/A N/A N/A 0.081±0.00 0.798±0.00 N/A N/A N/A N/A 0.178±0.00
ENST00000423168 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.591±0.00 N/A 0.391±0.00 N/A 0.602±0.00
ENST00000428590 0.087±0.00 N/A N/A 0.061±0.00 0.350±0.00 N/A N/A 0.132±0.00 0.055±0.00 0.125±0.00 0.133±0.00 0.133±0.00 N/A N/A
ENST00000433396 N/A N/A N/A N/A 0.220±0.00 0.264±0.00 0.069±0.00 0.083±0.00 0.073±0.00 N/A N/A 0.356±0.00 N/A 0.419±0.29
ENST00000435389 N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A 0.788±0.00 N/A N/A 0.428±0.12 N/A 0.275±0.00
ENSG00000232688 ENST00000444266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.526±0.00
ENSG00000235885 ENST00000445514 N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A
ENST00000450294 N/A 0.115±0.00 N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A
ENST00000452716 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593336 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENST00000594329 0.014±0.00 0.134±0.00 N/A 0.076±0.00 0.074±0.00 0.217±0.00 0.148±0.00 0.089±0.00 0.078±0.00 0.192±0.00 0.130±0.00 0.016±0.00 N/A 0.080±0.00
ENST00000598583 0.146±0.00 0.056±0.00 N/A 0.039±0.00 N/A 0.061±0.00 N/A 0.073±0.00 N/A 0.145±0.00 N/A N/A 0.090±0.00 0.051±0.00
ENST00000618608 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A 0.024±0.00 0.044±0.00
ENSG00000236780 ENST00000414404 N/A N/A 0.380±0.00 0.108±0.00 0.337±0.22 1.312±0.47 N/A N/A N/A 0.257±0.00 N/A 0.203±0.00 0.067±0.01 0.131±0.00
ENST00000433133 N/A N/A 0.074±0.00 N/A N/A 0.035±0.00 N/A N/A N/A 0.021±0.00 N/A 0.060±0.05 N/A 0.004±0.00
ENST00000447453 N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020160 ENSMUST00000068264 6.023±4.37 6.703±1.19 39.127±2.56 9.189±7.26 1.979±0.55 2.639±0.49 3.094±0.18 1.591±0.42 1.459±0.68 9.113±1.88 0.599±0.21 7.711±3.81 1.756±0.94 0.629±0.32
ENSMUST00000102878 N/A 6.838±0.75 N/A N/A 1.341±0.11 1.208±0.22 N/A N/A 0.454±0.00 N/A N/A 4.107±0.00 N/A N/A
ENSMUST00000118661 6.417±4.11 13.055±3.00 27.636±7.37 10.730±4.27 1.727±0.39 2.760±0.49 1.816±0.09 1.704±0.78 1.847±0.94 6.827±1.73 0.449±0.00 12.855±5.09 1.996±0.94 0.474±0.05
ENSMUST00000125722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144988 N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A 0.200±0.00 N/A
ENSMUST00000177357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A
ENSMUST00000177417 1.762±1.25 N/A 6.507±0.65 1.505±1.24 0.451±0.07 N/A N/A 0.391±0.08 0.374±0.15 2.017±0.01 0.158±0.06 1.733±0.07 0.352±0.20 N/A
ENSMUST00000185131 4.191±2.08 N/A N/A N/A 0.979±0.67 0.973±0.15 N/A 0.954±0.28 N/A 4.770±1.07 N/A 7.748±2.91 0.242±0.00 0.188±0.00
ENSMUSG00000081101 ENSMUST00000118819 N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.027±0.01 N/A N/A N/A 0.142±0.05 N/A 0.042±0.00
ENSMUSG00000081302 ENSMUST00000119030 N/A N/A 0.003±0.00 0.011±0.00 N/A N/A N/A N/A 0.025±0.01 N/A N/A 0.012±0.00 0.014±0.01 0.622±0.98
ENSMUSG00000082852 ENSMUST00000121061 0.014±0.00 0.033±0.00 0.034±0.01 N/A N/A 0.030±0.00 0.012±0.00 0.014±0.00 0.005±0.00 0.029±0.01 N/A 0.182±0.13 N/A 0.002±0.00
ENSMUSG00000085675 ENSMUST00000143311 0.485±0.20 0.231±0.03 0.111±0.00 N/A N/A N/A N/A 0.042±0.00 N/A 0.151±0.06 N/A 0.405±0.29 0.045±0.00 N/A
ENSMUSG00000085743 ENSMUST00000128654 0.171±0.10 0.313±0.13 1.070±0.15 0.104±0.00 N/A 0.075±0.00 0.023±0.00 0.060±0.02 0.026±0.02 0.082±0.05 0.017±0.00 0.413±0.30 0.039±0.00 0.050±0.00
ENSMUST00000133948 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.144±0.04 N/A 0.434±0.15 N/A N/A
ENSMUST00000156831 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085806 ENSMUST00000145182 N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.096±0.00 N/A N/A
ENSMUSG00000099449 ENSMUST00000188856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.07 N/A
ENSMUST00000190769 N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.084±0.00 0.024±0.00 N/A N/A 0.075±0.00 N/A 0.046±0.00

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