| Source ID |
Type |
Tax ID |
Position |
| hs842 |
VISTA |
10090 |
5:42222949-42824031  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007YK_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000224569' => null,
'ENSG00000248360' => 'long intergenic non-protein coding RNA 504',
'ENSG00000248425' => null,
'ENSG00000248698' => 'long intergenic non-protein coding RNA 1085',
'ENSG00000249988' => null,
'ENSG00000250634' => 'long intergenic non-protein coding RNA 1182',
'ENSG00000251252' => 'MT-ND2 pseudogene 31',
'ENSG00000251317' => 'Kruppel-like factor 17 pseudogene 2',
'ENSG00000251412' => null,
'ENSG00000251679' => null
),
'gene_name_arr' => array(
'ENSG00000224569' => 'RP11-341G5.2',
'ENSG00000248360' => 'LINC00504',
'ENSG00000248425' => 'AC006296.2',
'ENSG00000248698' => 'LINC01085',
'ENSG00000249988' => 'RP11-669M16.1',
'ENSG00000250634' => 'LINC01182',
'ENSG00000251252' => 'MTND2P31',
'ENSG00000251317' => 'KLF17P2',
'ENSG00000251412' => 'AC006296.1',
'ENSG00000251679' => 'RP11-669M16.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 13 => 'Brain',
(int) 19 => 'Breast',
(int) 23 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 37 => 'Liver',
(int) 43 => 'Lung',
(int) 45 => 'Muscle',
(int) 48 => 'Ovary',
(int) 55 => 'Placenta',
(int) 58 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000509955' => array(
'start' => '13977166',
'end' => '13978028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-341G5.2-001'
),
'ENST00000505089' => array(
'start' => '14470465',
'end' => '14888169',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-003'
),
'ENST00000506292' => array(
'start' => '14628756',
'end' => '14716595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-004'
),
'ENST00000509654' => array(
'start' => '14474085',
'end' => '14888167',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-001'
),
'ENST00000515031' => array(
'start' => '14474087',
'end' => '14888168',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-002'
),
'ENST00000514401' => array(
'start' => '14390439',
'end' => '14393992',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.2-001'
),
'ENST00000502759' => array(
'start' => '14111968',
'end' => '14140052',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-004'
),
'ENST00000506739' => array(
'start' => '14112020',
'end' => '14139486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-003'
),
'ENST00000511200' => array(
'start' => '14111977',
'end' => '14127256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-002'
),
'ENST00000512754' => array(
'start' => '14111990',
'end' => '14138737',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-001'
),
'ENST00000505628' => array(
'start' => '14235249',
'end' => '14242812',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-002'
),
'ENST00000514863' => array(
'start' => '14164455',
'end' => '14242813',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-001'
),
'ENST00000503532' => array(
'start' => '13820110',
'end' => '13977075',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-001'
),
'ENST00000510907' => array(
'start' => '13655179',
'end' => '13931228',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-002'
),
'ENST00000512602' => array(
'start' => '14505865',
'end' => '14506480',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTND2P31-001'
),
'ENST00000511195' => array(
'start' => '14126339',
'end' => '14126664',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KLF17P2-001'
),
'ENST00000507932' => array(
'start' => '14383123',
'end' => '14409078',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.1-001'
),
'ENST00000514339' => array(
'start' => '14134936',
'end' => '14143592',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
'ENSG00000224569' => array(
[maximum depth reached]
),
'ENSG00000248360' => array(
[maximum depth reached]
),
'ENSG00000248425' => array(
[maximum depth reached]
),
'ENSG00000248698' => array(
[maximum depth reached]
),
'ENSG00000249988' => array(
[maximum depth reached]
),
'ENSG00000250634' => array(
[maximum depth reached]
),
'ENSG00000251252' => array(
[maximum depth reached]
),
'ENSG00000251317' => array(
[maximum depth reached]
),
'ENSG00000251679' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Liver',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Kidney',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Testis',
(int) 48 => 'Adrenal',
(int) 49 => 'Ovary',
(int) 50 => 'Adrenal',
(int) 51 => 'Heart',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Liver',
(int) 62 => 'Muscle',
(int) 63 => 'Testis',
(int) 64 => 'Testis',
(int) 65 => 'Adrenal',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000224569' => null,
'ENSG00000248360' => 'long intergenic non-protein coding RNA 504',
'ENSG00000248425' => null,
'ENSG00000248698' => 'long intergenic non-protein coding RNA 1085',
'ENSG00000249988' => null,
'ENSG00000250634' => 'long intergenic non-protein coding RNA 1182',
'ENSG00000251252' => 'MT-ND2 pseudogene 31',
'ENSG00000251317' => 'Kruppel-like factor 17 pseudogene 2',
'ENSG00000251412' => null,
'ENSG00000251679' => null
)
$gene_name_arr = array(
'ENSG00000224569' => 'RP11-341G5.2',
'ENSG00000248360' => 'LINC00504',
'ENSG00000248425' => 'AC006296.2',
'ENSG00000248698' => 'LINC01085',
'ENSG00000249988' => 'RP11-669M16.1',
'ENSG00000250634' => 'LINC01182',
'ENSG00000251252' => 'MTND2P31',
'ENSG00000251317' => 'KLF17P2',
'ENSG00000251412' => 'AC006296.1',
'ENSG00000251679' => 'RP11-669M16.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '13967209',
'seq_end' => '14568300',
'region_length' => '601091',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '42222949',
'seq_end' => '42824031',
'region_length' => '601082',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 13 => 'Brain',
(int) 19 => 'Breast',
(int) 23 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 37 => 'Liver',
(int) 43 => 'Lung',
(int) 45 => 'Muscle',
(int) 48 => 'Ovary',
(int) 55 => 'Placenta',
(int) 58 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000509955' => array(
'start' => '13977166',
'end' => '13978028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-341G5.2-001'
),
'ENST00000505089' => array(
'start' => '14470465',
'end' => '14888169',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-003'
),
'ENST00000506292' => array(
'start' => '14628756',
'end' => '14716595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-004'
),
'ENST00000509654' => array(
'start' => '14474085',
'end' => '14888167',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-001'
),
'ENST00000515031' => array(
'start' => '14474087',
'end' => '14888168',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-002'
),
'ENST00000514401' => array(
'start' => '14390439',
'end' => '14393992',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.2-001'
),
'ENST00000502759' => array(
'start' => '14111968',
'end' => '14140052',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-004'
),
'ENST00000506739' => array(
'start' => '14112020',
'end' => '14139486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-003'
),
'ENST00000511200' => array(
'start' => '14111977',
'end' => '14127256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-002'
),
'ENST00000512754' => array(
'start' => '14111990',
'end' => '14138737',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-001'
),
'ENST00000505628' => array(
'start' => '14235249',
'end' => '14242812',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-002'
),
'ENST00000514863' => array(
'start' => '14164455',
'end' => '14242813',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-001'
),
'ENST00000503532' => array(
'start' => '13820110',
'end' => '13977075',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-001'
),
'ENST00000510907' => array(
'start' => '13655179',
'end' => '13931228',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-002'
),
'ENST00000512602' => array(
'start' => '14505865',
'end' => '14506480',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTND2P31-001'
),
'ENST00000511195' => array(
'start' => '14126339',
'end' => '14126664',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KLF17P2-001'
),
'ENST00000507932' => array(
'start' => '14383123',
'end' => '14409078',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.1-001'
),
'ENST00000514339' => array(
'start' => '14134936',
'end' => '14143592',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
'ENSG00000224569' => array(
[maximum depth reached]
),
'ENSG00000248360' => array(
[maximum depth reached]
),
'ENSG00000248425' => array(
[maximum depth reached]
),
'ENSG00000248698' => array(
[maximum depth reached]
),
'ENSG00000249988' => array(
[maximum depth reached]
),
'ENSG00000250634' => array(
[maximum depth reached]
),
'ENSG00000251252' => array(
[maximum depth reached]
),
'ENSG00000251317' => array(
[maximum depth reached]
),
'ENSG00000251679' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Liver',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Kidney',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Testis',
(int) 48 => 'Adrenal',
(int) 49 => 'Ovary',
(int) 50 => 'Adrenal',
(int) 51 => 'Heart',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Liver',
(int) 62 => 'Muscle',
(int) 63 => 'Testis',
(int) 64 => 'Testis',
(int) 65 => 'Adrenal',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '42222949',
'seq_end' => '42824031',
'region_length' => '601082',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
)
$gene_el = array(
'ENST00000514339' => array(
'Adrenal' => array(
'average_FPKM' => '0.387',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000251679'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.387',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000514339'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000224569' => null,
'ENSG00000248360' => 'long intergenic non-protein coding RNA 504',
'ENSG00000248425' => null,
'ENSG00000248698' => 'long intergenic non-protein coding RNA 1085',
'ENSG00000249988' => null,
'ENSG00000250634' => 'long intergenic non-protein coding RNA 1182',
'ENSG00000251252' => 'MT-ND2 pseudogene 31',
'ENSG00000251317' => 'Kruppel-like factor 17 pseudogene 2',
'ENSG00000251412' => null,
'ENSG00000251679' => null
),
'gene_name_arr' => array(
'ENSG00000224569' => 'RP11-341G5.2',
'ENSG00000248360' => 'LINC00504',
'ENSG00000248425' => 'AC006296.2',
'ENSG00000248698' => 'LINC01085',
'ENSG00000249988' => 'RP11-669M16.1',
'ENSG00000250634' => 'LINC01182',
'ENSG00000251252' => 'MTND2P31',
'ENSG00000251317' => 'KLF17P2',
'ENSG00000251412' => 'AC006296.1',
'ENSG00000251679' => 'RP11-669M16.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 13 => 'Brain',
(int) 19 => 'Breast',
(int) 23 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 37 => 'Liver',
(int) 43 => 'Lung',
(int) 45 => 'Muscle',
(int) 48 => 'Ovary',
(int) 55 => 'Placenta',
(int) 58 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000509955' => array(
'start' => '13977166',
'end' => '13978028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-341G5.2-001'
),
'ENST00000505089' => array(
'start' => '14470465',
'end' => '14888169',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-003'
),
'ENST00000506292' => array(
'start' => '14628756',
'end' => '14716595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-004'
),
'ENST00000509654' => array(
'start' => '14474085',
'end' => '14888167',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-001'
),
'ENST00000515031' => array(
'start' => '14474087',
'end' => '14888168',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-002'
),
'ENST00000514401' => array(
'start' => '14390439',
'end' => '14393992',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.2-001'
),
'ENST00000502759' => array(
'start' => '14111968',
'end' => '14140052',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-004'
),
'ENST00000506739' => array(
'start' => '14112020',
'end' => '14139486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-003'
),
'ENST00000511200' => array(
'start' => '14111977',
'end' => '14127256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-002'
),
'ENST00000512754' => array(
'start' => '14111990',
'end' => '14138737',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-001'
),
'ENST00000505628' => array(
'start' => '14235249',
'end' => '14242812',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-002'
),
'ENST00000514863' => array(
'start' => '14164455',
'end' => '14242813',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-001'
),
'ENST00000503532' => array(
'start' => '13820110',
'end' => '13977075',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-001'
),
'ENST00000510907' => array(
'start' => '13655179',
'end' => '13931228',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-002'
),
'ENST00000512602' => array(
'start' => '14505865',
'end' => '14506480',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTND2P31-001'
),
'ENST00000511195' => array(
'start' => '14126339',
'end' => '14126664',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KLF17P2-001'
),
'ENST00000507932' => array(
'start' => '14383123',
'end' => '14409078',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.1-001'
),
'ENST00000514339' => array(
'start' => '14134936',
'end' => '14143592',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
'ENSG00000224569' => array(
[maximum depth reached]
),
'ENSG00000248360' => array(
[maximum depth reached]
),
'ENSG00000248425' => array(
[maximum depth reached]
),
'ENSG00000248698' => array(
[maximum depth reached]
),
'ENSG00000249988' => array(
[maximum depth reached]
),
'ENSG00000250634' => array(
[maximum depth reached]
),
'ENSG00000251252' => array(
[maximum depth reached]
),
'ENSG00000251317' => array(
[maximum depth reached]
),
'ENSG00000251679' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Liver',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Kidney',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Testis',
(int) 48 => 'Adrenal',
(int) 49 => 'Ovary',
(int) 50 => 'Adrenal',
(int) 51 => 'Heart',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Liver',
(int) 62 => 'Muscle',
(int) 63 => 'Testis',
(int) 64 => 'Testis',
(int) 65 => 'Adrenal',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000224569' => null,
'ENSG00000248360' => 'long intergenic non-protein coding RNA 504',
'ENSG00000248425' => null,
'ENSG00000248698' => 'long intergenic non-protein coding RNA 1085',
'ENSG00000249988' => null,
'ENSG00000250634' => 'long intergenic non-protein coding RNA 1182',
'ENSG00000251252' => 'MT-ND2 pseudogene 31',
'ENSG00000251317' => 'Kruppel-like factor 17 pseudogene 2',
'ENSG00000251412' => null,
'ENSG00000251679' => null
)
$gene_name_arr = array(
'ENSG00000224569' => 'RP11-341G5.2',
'ENSG00000248360' => 'LINC00504',
'ENSG00000248425' => 'AC006296.2',
'ENSG00000248698' => 'LINC01085',
'ENSG00000249988' => 'RP11-669M16.1',
'ENSG00000250634' => 'LINC01182',
'ENSG00000251252' => 'MTND2P31',
'ENSG00000251317' => 'KLF17P2',
'ENSG00000251412' => 'AC006296.1',
'ENSG00000251679' => 'RP11-669M16.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '13967209',
'seq_end' => '14568300',
'region_length' => '601091',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '42222949',
'seq_end' => '42824031',
'region_length' => '601082',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 13 => 'Brain',
(int) 19 => 'Breast',
(int) 23 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 37 => 'Liver',
(int) 43 => 'Lung',
(int) 45 => 'Muscle',
(int) 48 => 'Ovary',
(int) 55 => 'Placenta',
(int) 58 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000509955' => array(
'start' => '13977166',
'end' => '13978028',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-341G5.2-001'
),
'ENST00000505089' => array(
'start' => '14470465',
'end' => '14888169',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-003'
),
'ENST00000506292' => array(
'start' => '14628756',
'end' => '14716595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-004'
),
'ENST00000509654' => array(
'start' => '14474085',
'end' => '14888167',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-001'
),
'ENST00000515031' => array(
'start' => '14474087',
'end' => '14888168',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00504-002'
),
'ENST00000514401' => array(
'start' => '14390439',
'end' => '14393992',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.2-001'
),
'ENST00000502759' => array(
'start' => '14111968',
'end' => '14140052',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-004'
),
'ENST00000506739' => array(
'start' => '14112020',
'end' => '14139486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-003'
),
'ENST00000511200' => array(
'start' => '14111977',
'end' => '14127256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-002'
),
'ENST00000512754' => array(
'start' => '14111990',
'end' => '14138737',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01085-001'
),
'ENST00000505628' => array(
'start' => '14235249',
'end' => '14242812',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-002'
),
'ENST00000514863' => array(
'start' => '14164455',
'end' => '14242813',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.1-001'
),
'ENST00000503532' => array(
'start' => '13820110',
'end' => '13977075',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-001'
),
'ENST00000510907' => array(
'start' => '13655179',
'end' => '13931228',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01182-002'
),
'ENST00000512602' => array(
'start' => '14505865',
'end' => '14506480',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTND2P31-001'
),
'ENST00000511195' => array(
'start' => '14126339',
'end' => '14126664',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'KLF17P2-001'
),
'ENST00000507932' => array(
'start' => '14383123',
'end' => '14409078',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC006296.1-001'
),
'ENST00000514339' => array(
'start' => '14134936',
'end' => '14143592',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-669M16.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007YK_0001' => array(
'genes_in_region' => array(
'ENSG00000224569' => array(
[maximum depth reached]
),
'ENSG00000248360' => array(
[maximum depth reached]
),
'ENSG00000248425' => array(
[maximum depth reached]
),
'ENSG00000248698' => array(
[maximum depth reached]
),
'ENSG00000249988' => array(
[maximum depth reached]
),
'ENSG00000250634' => array(
[maximum depth reached]
),
'ENSG00000251252' => array(
[maximum depth reached]
),
'ENSG00000251317' => array(
[maximum depth reached]
),
'ENSG00000251679' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Heart',
(int) 33 => 'Liver',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Kidney',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Brain',
(int) 43 => 'Heart',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Bladder',
(int) 47 => 'Testis',
(int) 48 => 'Adrenal',
(int) 49 => 'Ovary',
(int) 50 => 'Adrenal',
(int) 51 => 'Heart',
(int) 52 => 'Testis',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Liver',
(int) 62 => 'Muscle',
(int) 63 => 'Testis',
(int) 64 => 'Testis',
(int) 65 => 'Adrenal',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007YK_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '42222949',
'seq_end' => '42824031',
'region_length' => '601082',
'region_type' => 'VISTA',
'el_id' => 'hs842'
)
)
$gene_el = array(
'ENST00000514339' => array(
'Adrenal' => array(
'average_FPKM' => '0.387',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000251679'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.387',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000514339'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(RP11-341G5.2)