C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007YZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1013 VISTA 9606 18:54732639-55333995
GeneTranscriptPositionBiotype
ENSG00000041353 (RAB27B)
RAB27B, member RAS oncogene family 		ENST00000262094 (RAB27B-001) 54828199-54895516 protein_coding
ENST00000586570 (RAB27B-004) 54717860-54884355 protein_coding
ENST00000586594 (RAB27B-003) 54828481-54888113 processed_transcript
ENST00000592334 (RAB27B-002) 54884357-54893301 protein_coding
ENSG00000166510 (CCDC68)
coiled-coil domain containing 68 		ENST00000337363 (CCDC68-006) 54904081-54958048 protein_coding
ENST00000432185 (CCDC68-201) 54901511-54942950 protein_coding
ENST00000587148 (CCDC68-002) 54937602-54959461 retained_intron
ENST00000591504 (CCDC68-001) 54901509-54959508 protein_coding
ENST00000592040 (CCDC68-005) 54903320-54936905 protein_coding
ENST00000592294 (CCDC68-004) 54928876-54937277 retained_intron
ENSG00000196628 (TCF4)
transcription factor 4 		ENST00000354452 (TCF4-201) 55222331-55588629 protein_coding
ENST00000356073 (TCF4-002) 55222334-55588629 protein_coding
ENST00000398339 (TCF4-004) 55227936-55635954 protein_coding
ENST00000457482 (TCF4-015) 55227689-55322294 protein_coding
ENST00000537578 (TCF4-003) 55227752-55589814 protein_coding
ENST00000537856 (TCF4-013) 55227849-55401690 protein_coding
ENST00000540999 (TCF4-007) 55227690-55586105 protein_coding
ENST00000543082 (TCF4-009) 55227689-55510769 protein_coding
ENST00000544241 (TCF4-011) 55227855-55403995 protein_coding
ENST00000561831 (TCF4-016) 55227878-55302626 protein_coding
ENST00000561992 (TCF4-010) 55227864-55422492 protein_coding
ENST00000562030 (TCF4-014) 55350359-55401335 protein_coding
ENST00000562543 (TCF4-040) 55350955-55591170 protein_coding
ENST00000562607 (TCF4-035) 55275648-55351997 protein_coding
ENST00000562638 (TCF4-043) 55275662-55401712 protein_coding
ENST00000562680 (TCF4-018) 55227849-55401668 retained_intron
ENST00000562847 (TCF4-029) 55350967-55585966 protein_coding
ENST00000563686 (TCF4-017) 55264596-55464144 retained_intron
ENST00000563760 (TCF4-037) 55254504-55321805 processed_transcript
ENST00000563824 (TCF4-028) 55350364-55585437 protein_coding
ENST00000563888 (TCF4-025) 55350402-55586119 protein_coding
ENST00000564228 (TCF4-042) 55227911-55403714 protein_coding
ENST00000564343 (TCF4-023) 55350896-55591279 protein_coding
ENST00000564403 (TCF4-019) 55227936-55589803 protein_coding
ENST00000564999 (TCF4-006) 55227820-55588610 protein_coding
ENST00000565018 (TCF4-001) 55227884-55589520 protein_coding
ENST00000565124 (TCF4-020) 55585280-55635948 protein_coding
ENST00000565393 (TCF4-039) 55585317-55631362 protein_coding
ENST00000565580 (TCF4-030) 55403454-55546934 processed_transcript
ENST00000565908 (TCF4-024) 55275707-55588160 protein_coding
ENST00000566279 (TCF4-045) 55227911-55588617 protein_coding
ENST00000566286 (TCF4-041) 55227911-55588535 protein_coding
ENST00000566376 (TCF4-036) 55332067-55403506 processed_transcript
ENST00000566514 (TCF4-027) 55269884-55585769 protein_coding
ENST00000566777 (TCF4-032) 55275680-55422355 protein_coding
ENST00000567880 (TCF4-046) 55227911-55587116 protein_coding
ENST00000568147 (TCF4-026) 55350376-55585968 protein_coding
ENST00000568169 (TCF4-021) 55269924-55664787 protein_coding
ENST00000568186 (TCF4-033) 55275660-55403706 protein_coding
ENST00000568673 (TCF4-008) 55227674-55585908 protein_coding
ENST00000568740 (TCF4-005) 55227846-55589798 protein_coding
ENST00000569012 (TCF4-034) 55269875-55401551 protein_coding
ENST00000569357 (TCF4-022) 55403454-55635892 protein_coding
ENST00000570146 (TCF4-038) 55259621-55275671 protein_coding
ENST00000570177 (TCF4-012) 55227984-55402240 protein_coding
ENST00000570287 (TCF4-044) 55227911-55321986 protein_coding
ENST00000590810 (TCF4-047) 55350357-55401851 protein_coding
ENST00000616053 (TCF4-202) 55222331-55588629 protein_coding
ENSG00000264804 (AC098848.1)
 ENST00000579333 (AC098848.1-201) 55001296-55001398 miRNA
ENSG00000267013 (CTD-2171N6.1)
 ENST00000589125 (CTD-2171N6.1-001) 55105904-55124306 lincRNA
ENST00000592405 (CTD-2171N6.1-002) 55108311-55119598 lincRNA
ENSG00000267311 (RP11-99A1.2)
 ENST00000590604 (RP11-99A1.2-001) 54879457-54880809 lincRNA
ENSG00000267524 (RPSAP57)
ribosomal protein SA pseudogene 57 		ENST00000590033 (RPSAP57-001) 54744750-54745581 processed_pseudogene
ENSG00000267647 (MAP1LC3P)
microtubule-associated protein 1 light chain 3 pseudogene 		ENST00000588023 (MAP1LC3P-001) 54954403-54954732 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0007YZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1013 VISTA 10090 18:69544647-70146012
GeneTranscriptPositionBiotype
ENSMUSG00000024511 (Rab27b)
RAB27B, member RAS oncogene family 		ENSMUST00000069749 (Rab27b-004) 69983656-70053588 protein_coding
ENSMUST00000117692 (Rab27b-003) 69983656-70053588 protein_coding
ENSMUST00000121693 (Rab27b-001) 69979131-70141605 protein_coding
ENSMUST00000127217 (Rab27b-002) 70138164-70141574 retained_intron
ENSMUSG00000038903 (Ccdc68)
coiled-coil domain containing 68 		ENSMUST00000043929 (Ccdc68-001) 69925466-69969484 protein_coding
ENSMUST00000080050 (Ccdc68-002) 69925576-69969484 protein_coding
ENSMUST00000135428 (Ccdc68-004) 69925570-69938952 processed_transcript
ENSMUST00000151773 (Ccdc68-003) 69925426-69944044 processed_transcript
ENSMUSG00000084948 (1700061H18Rik)
RIKEN cDNA 1700061H18 gene 		ENSMUST00000139488 (1700061H18Rik-002) 69943320-69969609 antisense
ENSMUST00000147221 (1700061H18Rik-001) 69946938-69969596 antisense
ENSMUSG00000086824 (4930448D08Rik)
RIKEN cDNA 4930448D08 gene 		ENSMUST00000149958 (4930448D08Rik-001) 69969677-69972366 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YZ_0001ENSG00000041353ENST00000262094ENST00000586570ENST00000586594ENST00000592334ENSG00000166510ENST00000337363ENST00000591504ENST00000592040ENSG00000196628ENST00000354452ENST00000537856ENST00000562680ENST00000563686ENST00000570287ENST00000616053ENSG00000264804ENST00000579333ENSG00000267013ENST00000589125ENST00000592405ENSG00000267311ENST00000590604ENSG00000267524ENST00000590033ENSG00000267647ENST00000588023CIL_0007YZ_0002ENSMUSG00000024511ENSMUST00000069749ENSMUST00000117692ENSMUST00000121693ENSMUSG00000038903ENSMUST00000043929ENSMUST00000080050ENSMUST00000135428ENSMUST00000151773ENSMUSG00000084948ENSMUST00000139488ENSMUST00000147221ENSMUSG00000086824ENSMUST00000149958
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000041353 ENST00000262094 N/A N/A N/A N/A 0.259±0.00 1.045±0.00 0.015±0.00 N/A 1.149±0.00 N/A 0.008±0.00 0.931±0.40 0.401±0.18 0.289±0.00
ENST00000586570 N/A N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586594 0.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.095±0.00
ENSG00000166510 ENST00000337363 N/A N/A 0.245±0.00 N/A N/A 1.922±0.00 0.659±0.00 N/A N/A N/A N/A 1.006±0.00 N/A 2.682±0.00
ENST00000432185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591504 0.717±0.00 0.576±0.00 0.081±0.00 0.455±0.01 0.557±0.00 1.808±1.15 0.523±0.00 0.951±0.00 0.387±0.22 2.867±0.47 0.032±0.00 0.694±0.17 2.718±0.62 0.824±0.15
ENST00000592040 N/A N/A 0.527±0.00 N/A 2.323±0.00 N/A N/A N/A N/A N/A N/A 1.901±0.00 N/A N/A
ENST00000592294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196628 ENST00000354452 N/A 1.835±0.00 0.424±0.00 4.754±0.00 N/A 2.393±0.00 N/A N/A 8.074±0.00 N/A 0.564±0.00 3.739±1.86 N/A N/A
ENST00000356073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.314±0.00 25.078±0.00 33.153±0.00
ENST00000540999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562680 N/A N/A N/A N/A N/A N/A 3.132±0.00 1.025±0.00 N/A 6.480±0.00 N/A 6.657±0.00 N/A N/A
ENST00000562847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563686 N/A N/A 0.745±0.00 N/A 3.612±0.00 2.276±0.00 2.306±0.00 N/A 5.998±0.00 6.536±0.00 1.156±0.00 N/A N/A N/A
ENST00000563760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570287 N/A N/A 2.153±0.00 N/A N/A N/A N/A N/A N/A N/A 2.780±0.00 N/A N/A N/A
ENST00000590810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616053 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.169±0.00 N/A N/A N/A N/A
ENSG00000264804 ENST00000579333 N/A 0.801±0.00 N/A 0.312±0.00 0.149±0.00 N/A 0.333±0.00 0.301±0.00 N/A 0.149±0.00 N/A N/A N/A N/A
ENSG00000267013 ENST00000589125 0.028±0.00 N/A N/A 0.055±0.00 N/A N/A 0.051±0.00 N/A N/A N/A N/A 0.015±0.01 0.100±0.01 0.011±0.00
ENST00000592405 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.222±0.00 N/A 0.133±0.00 N/A 0.030±0.00
ENSG00000267311 ENST00000590604 N/A 0.035±0.00 N/A 0.018±0.00 0.367±0.00 0.181±0.00 N/A N/A 0.057±0.00 0.302±0.27 0.088±0.00 1.493±0.00 N/A 0.247±0.07
ENSG00000267524 ENST00000590033 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267647 ENST00000588023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 0.175±0.00 0.095±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024511 ENSMUST00000069749 0.873±0.31 0.692±0.30 37.897±1.84 1.045±0.43 3.298±2.24 49.198±4.60 0.314±0.16 1.091±0.27 1.672±1.58 10.074±1.11 0.080±0.03 2.856±1.55 0.801±0.17 0.039±0.02
ENSMUST00000117692 0.184±0.00 N/A N/A N/A N/A N/A 0.153±0.00 0.155±0.00 N/A N/A 0.087±0.00 0.640±0.34 0.086±0.00 N/A
ENSMUST00000121693 0.123±0.02 0.063±0.02 7.442±0.00 0.797±0.80 0.285±0.15 N/A 0.077±0.03 0.142±0.03 0.120±0.15 1.370±0.18 0.036±0.01 0.238±0.09 0.077±0.03 0.019±0.01
ENSMUST00000127217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038903 ENSMUST00000043929 0.146±0.10 0.267±0.13 2.543±0.02 0.048±0.00 0.195±0.07 2.503±1.79 0.348±0.11 1.085±0.35 0.509±0.33 1.435±0.29 0.083±0.04 1.605±1.77 14.713±5.12 N/A
ENSMUST00000080050 N/A N/A N/A 0.058±0.00 0.325±0.00 N/A N/A 0.496±0.00 N/A N/A 0.165±0.06 N/A N/A N/A
ENSMUST00000135428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A
ENSMUST00000151773 0.207±0.00 0.301±0.09 N/A 0.033±0.00 0.173±0.04 N/A N/A N/A 0.185±0.09 0.467±0.00 N/A 0.528±0.25 N/A N/A
ENSMUSG00000084948 ENSMUST00000139488 N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A 1.144±0.25
ENSMUST00000147221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 3.893±0.00 20.924±6.64 0.488±0.12
ENSMUSG00000086824 ENSMUST00000149958 0.063±0.00 N/A 0.074±0.02 0.007±0.00 N/A 0.163±0.00 0.029±0.00 0.096±0.04 0.077±0.09 0.117±0.01 0.046±0.00 0.047±0.02 0.122±0.10 0.962±0.28

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