C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000806_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs830 VISTA 9606 15:37567306-38168806
GeneTranscriptPositionBiotype
ENSG00000166069 (TMCO5A)
transmembrane and coiled-coil domains 5A 		ENST00000319669 (TMCO5A-001) 37935257-37951539 protein_coding
ENST00000558148 (TMCO5A-007) 37934640-37936949 protein_coding
ENST00000558158 (TMCO5A-004) 37934643-37944426 protein_coding
ENST00000558625 (TMCO5A-006) 37933253-37941194 protein_coding
ENST00000559502 (TMCO5A-005) 37934626-37967724 protein_coding
ENST00000559813 (TMCO5A-003) 37935257-37942387 retained_intron
ENST00000560653 (TMCO5A-008) 37934656-37951285 nonsense_mediated_decay
ENST00000560841 (TMCO5A-009) 37921939-37936918 protein_coding
ENSG00000236914 (RP11-1008C21.2)
 ENST00000434223 (RP11-1008C21.2-001) 38071627-38072683 lincRNA
ENST00000559232 (RP11-1008C21.2-004) 38069481-38071902 lincRNA
ENST00000560198 (RP11-1008C21.2-003) 38072018-38072959 lincRNA
ENST00000560819 (RP11-1008C21.2-002) 38071627-38072090 lincRNA
ENSG00000259225 (RP11-1008C21.1)
 ENST00000557883 (RP11-1008C21.1-002) 38004746-38025018 lincRNA
ENST00000558081 (RP11-1008C21.1-003) 37984766-38040987 lincRNA
ENST00000558897 (RP11-1008C21.1-004) 38040393-38062340 lincRNA
ENST00000559992 (RP11-1008C21.1-001) 37993409-38025018 lincRNA
CIL_000806_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs830 VISTA 10090 2:116507729-117109252
GeneTranscriptPositionBiotype
ENSMUSG00000027355 (Tmco5)
transmembrane and coiled-coil domains 5 		ENSMUST00000028834 (Tmco5-001) 116878708-116892494 protein_coding
ENSMUST00000123598 (Tmco5-004) 116878691-116892181 protein_coding
ENSMUST00000146144 (Tmco5-003) 116888207-116892494 processed_transcript
ENSMUST00000155470 (Tmco5-002) 116878694-116892137 protein_coding
ENSMUSG00000074930 (Gm13981)
predicted gene 13981 		ENSMUST00000122360 (Gm13981-001) 117055566-117056012 processed_pseudogene
ENSMUSG00000081787 (Gm13991)
predicted gene 13991 		ENSMUST00000120190 (Gm13991-001) 116527843-116528490 processed_pseudogene
ENSMUSG00000085316 (D330050G23Rik)
RIKEN cDNA D330050G23 gene 		ENSMUST00000126467 (D330050G23Rik-001) 116900152-116912791 lincRNA
ENSMUST00000128305 (D330050G23Rik-002) 116900175-116912628 lincRNA
ENSMUST00000155323 (D330050G23Rik-003) 116900194-116904557 lincRNA
ENSMUSG00000086462 (Gm13990)
predicted gene 13990 		ENSMUST00000151391 (Gm13990-001) 116848099-116877168 antisense
ENSMUSG00000099470 (RP23-326F22.4)
predicted gene 29340 		ENSMUST00000188763 (RP23-326F22.4-001) 116972575-116976428 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000806_0001ENSG00000166069ENST00000319669ENST00000558148ENST00000558158ENST00000558625ENST00000559502ENST00000559813ENST00000560653ENST00000560841ENSG00000236914ENST00000434223ENST00000559232ENST00000560198ENST00000560819ENSG00000259225ENST00000557883ENST00000558081ENST00000558897ENST00000559992CIL_000806_0002ENSMUSG00000027355ENSMUST00000028834ENSMUST00000123598ENSMUST00000146144ENSMUST00000155470ENSMUSG00000074930ENSMUST00000122360ENSMUSG00000081787ENSMUST00000120190ENSMUSG00000085316ENSMUST00000126467ENSMUST00000128305ENSMUST00000155323ENSMUSG00000086462ENSMUST00000151391ENSMUSG00000099470ENSMUST00000188763
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000806_0001ENSG00000166069ENST00000319669ENST00000558158ENST00000559813ENST00000560653ENST00000560841ENSG00000236914ENST00000434223ENST00000560198ENST00000560819ENSG00000259225ENST00000557883ENST00000558081ENST00000558897ENST00000559992CIL_000806_0002ENSMUSG00000027355ENSMUST00000028834ENSMUST00000123598ENSMUST00000146144ENSMUST00000155470ENSMUSG00000074930ENSMUST00000122360ENSMUSG00000081787ENSMUST00000120190ENSMUSG00000085316ENSMUST00000126467ENSMUST00000128305ENSMUST00000155323ENSMUSG00000086462ENSMUST00000151391ENSMUSG00000099470ENSMUST00000188763
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166069 ENST00000319669 N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A 0.104±0.00 N/A 0.086±0.00 N/A 46.210±0.00
ENST00000558148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558158 N/A N/A N/A 0.035±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000558625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559813 N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A
ENST00000560653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.278±0.00
ENST00000560841 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236914 ENST00000434223 0.336±0.00 0.483±0.00 N/A 0.090±0.00 0.493±0.45 N/A N/A N/A 0.124±0.00 0.217±0.00 N/A 0.461±0.17 N/A 0.489±0.02
ENST00000559232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560198 0.245±0.00 0.264±0.00 0.496±0.00 0.323±0.00 0.867±0.00 0.301±0.04 0.068±0.00 0.213±0.00 N/A 0.449±0.21 N/A 0.460±0.36 0.484±0.17 0.390±0.19
ENST00000560819 N/A N/A 0.361±0.00 0.276±0.03 0.925±0.00 0.270±0.21 0.384±0.00 0.102±0.00 N/A N/A N/A 0.522±0.00 0.973±0.56 0.415±0.00
ENSG00000259225 ENST00000557883 N/A N/A 0.144±0.00 N/A N/A 0.076±0.00 0.073±0.00 N/A N/A N/A N/A N/A 0.023±0.00 0.133±0.03
ENST00000558081 0.062±0.00 N/A 0.084±0.00 0.065±0.02 0.102±0.00 0.085±0.07 N/A N/A N/A 0.615±0.33 N/A 0.077±0.00 0.084±0.00 0.128±0.07
ENST00000558897 N/A N/A N/A 0.692±0.00 N/A N/A N/A N/A 0.160±0.00 1.141±0.00 N/A 0.070±0.01 N/A 0.124±0.00
ENST00000559992 N/A 0.056±0.00 N/A 0.602±0.44 0.087±0.00 N/A 0.055±0.00 N/A 0.097±0.00 N/A N/A N/A N/A 0.265±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027355 ENSMUST00000028834 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A 42.707±12.85
ENSMUST00000123598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 344.243±0.00
ENSMUST00000146144 0.094±0.00 0.237±0.00 N/A 0.060±0.00 0.201±0.00 N/A N/A 0.217±0.02 N/A N/A N/A 0.079±0.00 N/A 115.315±3.98
ENSMUST00000155470 N/A N/A N/A 1.578±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 682.579±0.00
ENSMUSG00000074930 ENSMUST00000122360 N/A N/A N/A 0.008±0.00 0.370±0.00 N/A N/A N/A 0.036±0.00 N/A 0.125±0.00 N/A N/A 0.098±0.00
ENSMUSG00000081787 ENSMUST00000120190 2.506±0.89 0.252±0.14 0.264±0.13 0.466±0.25 0.649±0.23 0.134±0.00 0.556±0.43 0.580±0.36 0.379±0.22 0.840±0.31 0.129±0.05 2.639±1.76 0.086±0.05 0.235±0.12
ENSMUSG00000085316 ENSMUST00000126467 0.206±0.04 0.900±0.55 0.147±0.04 0.085±0.00 0.168±0.03 0.105±0.00 0.079±0.00 0.087±0.02 0.017±0.01 0.069±0.01 N/A 0.365±0.11 0.045±0.02 0.069±0.00
ENSMUST00000128305 0.184±0.06 N/A N/A 0.135±0.05 0.141±0.03 0.130±0.05 0.061±0.02 N/A 0.009±0.00 0.145±0.07 0.032±0.01 0.304±0.26 N/A 0.031±0.01
ENSMUST00000155323 N/A 0.548±0.00 N/A N/A 0.210±0.00 N/A 0.071±0.00 N/A 0.041±0.01 N/A N/A 0.541±0.14 N/A 0.179±0.08
ENSMUSG00000086462 ENSMUST00000151391 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A 0.143±0.06 N/A 0.153±0.07
ENSMUSG00000099470 ENSMUST00000188763 0.050±0.02 0.522±0.17 0.065±0.02 0.045±0.02 0.063±0.04 0.038±0.02 0.038±0.01 0.046±0.01 0.018±0.01 0.090±0.04 0.012±0.00 0.141±0.04 0.018±0.01 0.109±0.05

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