C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000817_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2061 VISTA 9606 6:6863717-7465821
GeneTranscriptPositionBiotype
ENSG00000124782 (RREB1)
ras responsive element binding protein 1 		ENST00000334984 (RREB1-003) 7108031-7250012 protein_coding
ENST00000349384 (RREB1-002) 7108031-7251030 protein_coding
ENST00000379933 (RREB1-004) 7107597-7249274 protein_coding
ENST00000379938 (RREB1-001) 7107808-7251980 protein_coding
ENST00000467782 (RREB1-012) 7108026-7181923 protein_coding
ENST00000471433 (RREB1-011) 7107821-7210871 protein_coding
ENST00000475946 (RREB1-005) 7108632-7219091 retained_intron
ENST00000483150 (RREB1-008) 7139245-7230433 protein_coding
ENST00000491191 (RREB1-007) 7107799-7189306 protein_coding
ENST00000611109 (RREB1-201) 7230642-7250012 protein_coding
ENSG00000124783 (SSR1)
signal sequence receptor, alpha 		ENST00000244763 (SSR1-001) 7281143-7313207 protein_coding
ENST00000397511 (SSR1-002) 7287570-7313198 protein_coding
ENST00000462112 (SSR1-011) 7296883-7313188 protein_coding
ENST00000474597 (SSR1-003) 7268306-7313207 protein_coding
ENST00000475213 (SSR1-012) 7268938-7289850 processed_transcript
ENST00000479365 (SSR1-007) 7289676-7313182 protein_coding
ENST00000479485 (SSR1-010) 7295056-7301363 protein_coding
ENST00000483409 (SSR1-009) 7301390-7313231 processed_transcript
ENST00000488834 (SSR1-008) 7301333-7347446 processed_transcript
ENST00000489567 (SSR1-006) 7288682-7313174 protein_coding
ENSG00000124784 (RIOK1)
RIO kinase 1 		ENST00000264874 (RIOK1-002) 7396752-7418037 retained_intron
ENST00000379834 (RIOK1-001) 7389496-7418037 protein_coding
ENST00000475351 (RIOK1-003) 7389793-7402848 nonsense_mediated_decay
ENST00000484626 (RIOK1-004) 7403934-7405184 retained_intron
ENST00000493691 (RIOK1-005) 7410378-7411567 retained_intron
ENSG00000203498 (RP11-556O15.1)
 ENST00000423568 (RP11-556O15.1-001) 6993191-6995554 lincRNA
ENSG00000219375 (RP11-69L16.3)
 ENST00000404326 (RP11-69L16.3-001) 7331286-7331676 processed_pseudogene
ENSG00000220472 (RP11-69L16.5)
 ENST00000407940 (RP11-69L16.5-001) 7338839-7339568 processed_pseudogene
ENSG00000223342 (RP3-429O6.1)
 ENST00000422310 (RP3-429O6.1-001) 6901022-6918715 lincRNA
ENSG00000225092 (RP11-405O10.2)
 ENST00000451355 (RP11-405O10.2-001) 7183083-7185287 sense_intronic
ENSG00000230570 (RP11-69L16.6)
 ENST00000419672 (RP11-69L16.6-001) 7340854-7342056 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000817_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2061 VISTA 10090 13:37577817-38179534
GeneTranscriptPositionBiotype
ENSMUSG00000021427 (Ssr1)
signal sequence receptor, alpha 		ENSMUST00000021864 (Ssr1-201) 37971401-37994190 protein_coding
ENSMUSG00000021428 (Riok1)
RIO kinase 1 (yeast) 		ENSMUST00000021866 (Riok1-201) 38036989-38061433 protein_coding
ENSMUSG00000039087 (Rreb1)
ras responsive element binding protein 1 		ENSMUST00000037232 (Rreb1-201) 37888871-37951994 protein_coding
ENSMUST00000110237 (Rreb1-002) 37827393-37932693 protein_coding
ENSMUST00000110238 (Rreb1-001) 37826039-37935545 protein_coding
ENSMUST00000122842 (Rreb1-009) 37778400-37893849 protein_coding
ENSMUST00000124268 (Rreb1-004) 37888434-37952002 nonsense_mediated_decay
ENSMUST00000124373 (Rreb1-006) 37826932-37947024 nonsense_mediated_decay
ENSMUST00000128570 (Rreb1-005) 37826315-37952000 protein_coding
ENSMUST00000138043 (Rreb1-007) 37825975-37893826 protein_coding
ENSMUST00000138110 (Rreb1-008) 37857934-37893914 protein_coding
ENSMUST00000149745 (Rreb1-003) 37826932-37932691 protein_coding
ENSMUST00000162849 (Rreb1-010) 37947016-37949206 protein_coding
ENSMUSG00000044566 (Cage1)
cancer antigen 1 		ENSMUST00000074969 (Cage1-201) 38006054-38036937 protein_coding
ENSMUST00000089840 (Cage1-003) 38020911-38037069 protein_coding
ENSMUST00000110233 (Cage1-001) 38006052-38036923 protein_coding
ENSMUST00000131066 (Cage1-002) 38023231-38036937 protein_coding
ENSMUSG00000054889 (Dsp)
desmoplakin 		ENSMUST00000124830 (Dsp-001) 38151348-38198577 protein_coding
ENSMUST00000127906 (Dsp-002) 38151328-38198577 protein_coding
ENSMUST00000145151 (Dsp-003) 38178367-38182234 processed_transcript
ENSMUSG00000098481 (Gm27387)
predicted gene, 27387 		ENSMUST00000184583 (Gm27387-201) 38086202-38086317 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000817_0001ENSG00000124782ENST00000334984ENST00000349384ENST00000379933ENST00000379938ENST00000467782ENST00000471433ENST00000475946ENST00000483150ENST00000491191ENST00000611109ENSG00000124783ENST00000244763ENST00000397511ENST00000462112ENST00000474597ENST00000475213ENST00000479365ENST00000479485ENST00000483409ENST00000488834ENST00000489567ENSG00000124784ENST00000264874ENST00000379834ENST00000475351ENST00000484626ENST00000493691ENSG00000203498ENST00000423568ENSG00000219375ENST00000404326ENSG00000220472ENST00000407940ENSG00000223342ENST00000422310ENSG00000225092ENST00000451355ENSG00000230570ENST00000419672CIL_000817_0002ENSMUSG00000021427ENSMUST00000021864ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000039087ENSMUST00000037232ENSMUST00000110237ENSMUST00000110238ENSMUST00000122842ENSMUST00000124268ENSMUST00000124373ENSMUST00000128570ENSMUST00000138043ENSMUST00000138110ENSMUST00000149745ENSMUST00000162849ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233ENSMUST00000131066ENSMUSG00000054889ENSMUST00000124830ENSMUST00000127906ENSMUST00000145151ENSMUSG00000098481ENSMUST00000184583
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000817_0001ENSG00000124782ENST00000334984ENST00000379933ENST00000379938ENST00000471433ENST00000475946ENST00000491191ENST00000611109ENSG00000124783ENST00000244763ENST00000397511ENST00000462112ENST00000479365ENSG00000124784ENST00000264874ENST00000379834ENSG00000203498ENST00000423568ENSG00000219375ENST00000404326ENSG00000220472ENST00000407940ENSG00000223342ENST00000422310ENSG00000225092ENST00000451355ENSG00000230570ENST00000419672CIL_000817_0002ENSMUSG00000021427ENSMUST00000021864ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000039087ENSMUST00000037232ENSMUST00000110238ENSMUST00000124268ENSMUST00000128570ENSMUST00000149745ENSMUST00000162849ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233ENSMUSG00000054889ENSMUST00000124830ENSMUST00000127906ENSMUSG00000098481ENSMUST00000184583
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124782 ENST00000334984 N/A N/A N/A N/A 1.398±0.00 N/A N/A N/A N/A N/A 0.731±0.00 N/A N/A N/A
ENST00000349384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379933 N/A 2.424±0.00 N/A N/A N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000379938 N/A 1.348±0.00 N/A 0.235±0.00 4.705±0.00 0.852±0.00 3.983±0.00 0.900±0.00 1.271±0.63 2.739±0.00 2.696±0.00 3.930±3.52 N/A 1.235±0.00
ENST00000467782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471433 N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A 6.977±0.00 N/A N/A N/A N/A N/A
ENST00000475946 N/A N/A N/A 0.053±0.00 1.846±0.00 N/A 0.270±0.00 N/A N/A N/A N/A 2.049±0.00 N/A N/A
ENST00000483150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.156±0.00 N/A N/A N/A
ENST00000611109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.00 N/A N/A N/A
ENSG00000124783 ENST00000244763 5.198±0.00 7.181±0.00 2.690±0.00 4.868±1.78 4.452±0.30 3.856±0.60 1.980±0.48 5.778±1.72 5.897±2.20 3.846±0.41 1.913±0.00 5.182±2.24 N/A 6.586±0.00
ENST00000397511 17.566±0.00 12.415±0.00 4.928±0.00 7.608±0.00 12.673±7.49 10.106±1.72 6.338±3.75 16.776±3.79 12.891±4.04 12.897±3.91 3.129±2.09 15.142±3.69 17.244±1.65 17.859±0.00
ENST00000462112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.361±0.00 55.100±0.00 78.940±0.00
ENST00000474597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479365 27.163±0.00 N/A N/A N/A 26.575±0.00 15.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124784 ENST00000264874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A
ENST00000379834 N/A 9.723±0.00 N/A N/A N/A 6.568±0.00 N/A N/A N/A N/A 5.861±0.00 10.653±6.27 8.404±1.80 26.693±6.33
ENST00000475351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203498 ENST00000423568 0.087±0.00 0.121±0.00 N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A 0.071±0.01 0.058±0.00 1.364±0.95
ENSG00000219375 ENST00000404326 N/A N/A N/A 0.044±0.00 0.124±0.00 0.038±0.00 0.077±0.00 0.041±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000220472 ENST00000407940 0.138±0.00 0.394±0.00 N/A 0.080±0.00 0.311±0.00 0.117±0.00 0.068±0.00 0.152±0.00 0.023±0.00 0.149±0.00 0.216±0.00 0.495±0.23 0.227±0.15 0.270±0.04
ENSG00000223342 ENST00000422310 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A
ENSG00000225092 ENST00000451355 0.040±0.00 0.144±0.00 0.875±0.00 0.035±0.00 0.680±0.63 1.291±1.28 0.451±0.40 0.437±0.42 0.671±0.65 1.399±1.38 1.127±0.00 1.073±1.03 N/A 0.034±0.01
ENSG00000230570 ENST00000419672 N/A N/A N/A N/A N/A 0.049±0.00 0.056±0.00 N/A N/A N/A N/A 0.062±0.00 0.058±0.00 0.032±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021427 ENSMUST00000021864 6.849±1.70 7.500±0.84 10.324±0.18 8.294±2.10 5.053±0.36 6.680±0.61 2.925±0.13 5.692±0.65 8.305±3.01 9.703±0.73 1.898±0.82 9.991±3.02 20.755±5.00 6.168±0.33
ENSMUSG00000021428 ENSMUST00000021866 4.844±1.22 3.654±0.85 7.945±0.84 9.154±0.90 3.330±0.85 4.176±0.62 2.058±0.49 2.715±0.49 5.297±3.68 6.141±1.06 1.823±0.25 6.905±4.43 15.101±6.54 8.683±1.27
ENSMUSG00000039087 ENSMUST00000037232 3.831±1.18 3.223±1.08 N/A 0.706±0.51 1.976±0.95 3.598±1.06 2.769±0.47 2.299±0.14 1.660±0.57 3.723±1.91 1.786±0.94 3.225±1.30 4.779±1.16 0.892±0.00
ENSMUST00000110237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110238 N/A N/A N/A N/A N/A N/A 0.624±0.00 N/A 0.776±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124268 N/A N/A N/A 0.270±0.00 N/A 2.404±0.00 N/A N/A 0.645±0.17 N/A N/A 1.959±0.82 N/A N/A
ENSMUST00000124373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128570 1.636±0.00 N/A 5.347±0.81 0.435±0.20 1.235±0.04 3.914±0.00 N/A 1.036±0.00 2.153±0.97 4.824±0.00 2.696±1.40 1.867±0.00 6.462±1.66 N/A
ENSMUST00000138043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149745 N/A 3.953±0.65 N/A N/A 3.508±0.35 3.615±0.31 N/A N/A N/A N/A N/A 3.748±0.79 N/A 0.575±0.04
ENSMUST00000162849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.591±0.00
ENSMUSG00000044566 ENSMUST00000074969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.992±0.00
ENSMUST00000089840 N/A 0.662±0.05 N/A N/A N/A 0.584±0.00 0.201±0.00 N/A 0.292±0.11 N/A N/A 1.142±0.32 N/A N/A
ENSMUST00000110233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.584±6.54
ENSMUST00000131066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054889 ENSMUST00000124830 0.623±0.43 0.089±0.04 5.527±0.84 0.306±0.07 0.565±0.23 8.203±1.41 25.617±2.69 1.193±0.06 1.446±0.43 3.550±1.86 0.078±0.00 3.918±4.18 29.269±20.46 0.063±0.00
ENSMUST00000127906 0.970±0.92 0.384±0.18 3.066±0.29 0.364±0.23 1.932±0.73 19.123±1.94 24.306±1.07 1.201±0.52 1.331±0.79 4.751±1.76 0.050±0.06 3.387±2.07 19.093±11.91 0.211±0.03
ENSMUST00000145151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098481 ENSMUST00000184583 N/A N/A 37.516±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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