C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000818_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2060 VISTA 9606 6:4058348-4659696
GeneTranscriptPositionBiotype
ENSG00000112739 (PRPF4B)
pre-mRNA processing factor 4B 		ENST00000337659 (PRPF4B-011) 4021326-4061907 protein_coding
ENST00000461612 (PRPF4B-009) 4062104-4064983 processed_transcript
ENST00000463634 (PRPF4B-002) 4040849-4064983 retained_intron
ENST00000466185 (PRPF4B-007) 4051982-4058890 processed_transcript
ENST00000480058 (PRPF4B-001) 4021267-4064982 nonsense_mediated_decay
ENST00000481109 (PRPF4B-003) 4037419-4064983 nonsense_mediated_decay
ENST00000490399 (PRPF4B-006) 4040848-4044226 processed_transcript
ENST00000490653 (PRPF4B-008) 4060982-4062069 processed_transcript
ENST00000494674 (PRPF4B-010) 4057160-4063556 processed_transcript
ENSG00000145975 (FAM217A)
family with sequence similarity 217, member A 		ENST00000274673 (FAM217A-001) 4068362-4079221 protein_coding
ENST00000380188 (FAM217A-003) 4068367-4087344 processed_transcript
ENST00000463904 (FAM217A-009) 4049434-4050518 processed_transcript
ENST00000469157 (FAM217A-008) 4050461-4087332 processed_transcript
ENST00000478714 (FAM217A-005) 4073458-4079221 processed_transcript
ENST00000492651 (FAM217A-007) 4073292-4079100 protein_coding
ENST00000498677 (FAM217A-006) 4069891-4079134 protein_coding
ENSG00000198721 (ECI2)
enoyl-CoA delta isomerase 2 		ENST00000361538 (ECI2-006) 4115706-4135597 protein_coding
ENST00000380118 (ECI2-003) 4115689-4135597 protein_coding
ENST00000380120 (ECI2-007) 4115702-4135590 nonsense_mediated_decay
ENST00000380125 (ECI2-001) 4115693-4135468 protein_coding
ENST00000464057 (ECI2-002) 4115706-4135575 retained_intron
ENST00000464583 (ECI2-004) 4115708-4133782 retained_intron
ENST00000465828 (ECI2-005) 4115707-4135557 protein_coding
ENST00000478266 (ECI2-010) 4115706-4135564 nonsense_mediated_decay
ENST00000489086 (ECI2-011) 4130318-4135573 retained_intron
ENST00000495548 (ECI2-009) 4127814-4135459 protein_coding
ENST00000496241 (ECI2-008) 4115700-4135591 nonsense_mediated_decay
ENSG00000205444 (KU-MEL-3)
uncharacterized LOC497048 		ENST00000380106 (KU-MEL-3-001) 4610656-4611304 lincRNA
ENSG00000216307 (RP3-400B16.2)
 ENST00000403917 (RP3-400B16.2-001) 4189116-4189806 processed_pseudogene
ENSG00000231811 (RP3-527G5.1)
 ENST00000437430 (RP3-527G5.1-001) 4345743-4347037 lincRNA
ENSG00000234817 (RP3-400B16.1)
 ENST00000427049 (RP3-400B16.1-001) 4136072-4157385 lincRNA
ENSG00000237716 (RP3-400B16.3)
 ENST00000427591 (RP3-400B16.3-001) 4186624-4188109 lincRNA
ENSG00000260239 (RP11-274H24.1)
 ENST00000563079 (RP11-274H24.1-002) 4491807-4495769 lincRNA
ENSG00000260673 (RP4-529N6.2)
 ENST00000568110 (RP4-529N6.2-001) 4599287-4602420 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000818_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2060 VISTA 10090 13:34912312-35513577
GeneTranscriptPositionBiotype
ENSMUSG00000021414 (Fam217a)
family with sequence similarity 217, member A 		ENSMUST00000021851 (Fam217a-201) 34909964-34919992 protein_coding
ENSMUSG00000021415 (4933417A18Rik)
RIKEN cDNA 4933417A18 gene 		ENSMUST00000160279 (4933417A18Rik-001) 34924409-34953197 protein_coding
ENSMUST00000160905 (4933417A18Rik-002) 34924409-34955875 nonsense_mediated_decay
ENSMUSG00000021416 (Eci3)
enoyl-Coenzyme A delta isomerase 3 		ENSMUST00000021853 (Eci3-001) 34946614-34963810 protein_coding
ENSMUST00000164155 (Eci3-002) 34948084-34963788 protein_coding
ENSMUSG00000021417 (Eci2)
enoyl-Coenzyme A delta isomerase 2 		ENSMUST00000021854 (Eci2-003) 34977749-34994127 protein_coding
ENSMUST00000084345 (Eci2-012) 34985896-34988356 retained_intron
ENSMUST00000110251 (Eci2-002) 34977757-34994132 protein_coding
ENSMUST00000163280 (Eci2-007) 34986106-35027094 protein_coding
ENSMUST00000164421 (Eci2-009) 34980252-34989565 processed_transcript
ENSMUST00000166109 (Eci2-011) 34978702-34988822 processed_transcript
ENSMUST00000167036 (Eci2-005) 34986157-34994132 protein_coding
ENSMUST00000169759 (Eci2-010) 34990218-34993462 protein_coding
ENSMUST00000170538 (Eci2-008) 34986067-35027094 protein_coding
ENSMUST00000170989 (Eci2-004) 34986148-34994123 protein_coding
ENSMUST00000171229 (Eci2-001) 34977748-34994144 protein_coding
ENSMUST00000171258 (Eci2-006) 34987525-34994122 protein_coding
ENSMUST00000178421 (Eci2-201) 34977750-34994144 protein_coding
ENSMUSG00000098209 (Gm8245)
predicted gene 8245 		ENSMUST00000182434 (Gm8245-001) 34940644-34941629 processed_pseudogene
ENSMUSG00000102099 (RP24-80P7.1)
RIKEN cDNA 1700011B04 gene 		ENSMUST00000189140 (RP24-80P7.1-001) 35181623-35188017 lincRNA
ENSMUST00000189905 (RP24-80P7.1-002) 35180267-35182749 retained_intron

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000818_0001ENSG00000112739ENST00000337659ENST00000461612ENST00000463634ENST00000466185ENST00000480058ENST00000481109ENST00000490399ENST00000490653ENST00000494674ENSG00000145975ENST00000274673ENST00000380188ENST00000463904ENST00000469157ENST00000478714ENST00000492651ENST00000498677ENSG00000198721ENST00000361538ENST00000380118ENST00000380120ENST00000380125ENST00000464057ENST00000464583ENST00000465828ENST00000478266ENST00000489086ENST00000495548ENST00000496241ENSG00000205444ENST00000380106ENSG00000216307ENST00000403917ENSG00000231811ENST00000437430ENSG00000234817ENST00000427049ENSG00000237716ENST00000427591ENSG00000260239ENST00000563079ENSG00000260673ENST00000568110CIL_000818_0002ENSMUSG00000021414ENSMUST00000021851ENSMUSG00000021415ENSMUST00000160279ENSMUST00000160905ENSMUSG00000021416ENSMUST00000021853ENSMUST00000164155ENSMUSG00000021417ENSMUST00000021854ENSMUST00000084345ENSMUST00000110251ENSMUST00000163280ENSMUST00000164421ENSMUST00000166109ENSMUST00000167036ENSMUST00000169759ENSMUST00000170538ENSMUST00000170989ENSMUST00000171229ENSMUST00000171258ENSMUST00000178421ENSMUSG00000098209ENSMUST00000182434ENSMUSG00000102099ENSMUST00000189140ENSMUST00000189905
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000818_0001ENSG00000112739ENST00000337659ENST00000480058ENST00000481109ENSG00000145975ENST00000274673ENST00000380188ENSG00000198721ENST00000361538ENST00000380118ENST00000380120ENST00000464057ENST00000464583ENST00000478266ENST00000489086ENST00000496241ENSG00000205444ENST00000380106ENSG00000216307ENST00000403917ENSG00000231811ENST00000437430ENSG00000234817ENST00000427049ENSG00000237716ENST00000427591ENSG00000260239ENST00000563079ENSG00000260673ENST00000568110CIL_000818_0002ENSMUSG00000021414ENSMUST00000021851ENSMUSG00000021415ENSMUST00000160279ENSMUST00000160905ENSMUSG00000021416ENSMUST00000021853ENSMUST00000164155ENSMUSG00000021417ENSMUST00000021854ENSMUST00000110251ENSMUST00000164421ENSMUST00000166109ENSMUST00000167036ENSMUST00000170989ENSMUST00000171229ENSMUST00000178421ENSMUSG00000098209ENSMUST00000182434ENSMUSG00000102099ENSMUST00000189140ENSMUST00000189905
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112739 ENST00000337659 4.346±0.00 4.868±0.00 3.584±0.00 3.246±2.05 3.293±0.00 4.297±0.35 2.893±1.28 4.132±1.16 3.125±1.33 4.009±0.07 1.484±1.17 4.546±1.56 3.862±0.72 6.520±1.08
ENST00000461612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480058 N/A 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63
ENST00000481109 N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00 N/A
ENST00000490399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145975 ENST00000274673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.582±2.16
ENST00000380188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.371±0.00
ENST00000463904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198721 ENST00000361538 15.352±0.00 9.231±0.00 6.887±0.00 3.293±1.73 11.042±8.64 10.698±4.26 20.329±0.00 21.266±1.77 12.102±10.96 10.619±0.00 28.844±22.56 14.022±5.74 10.745±4.63 12.386±0.00
ENST00000380118 16.286±0.00 4.493±0.00 3.419±0.00 5.755±3.49 4.437±2.45 5.514±3.18 13.095±6.27 29.443±1.84 6.249±2.78 3.035±0.09 17.533±6.94 12.412±5.28 12.432±4.24 N/A
ENST00000380120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.551±6.44
ENST00000380125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464057 N/A N/A N/A N/A 1.171±0.00 N/A N/A N/A 0.964±0.00 1.648±0.00 N/A N/A N/A N/A
ENST00000464583 N/A N/A 1.342±0.00 0.826±0.47 0.462±0.00 0.726±0.00 N/A N/A N/A 0.705±0.00 N/A 1.154±0.56 N/A N/A
ENST00000465828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.728±0.00 16.039±0.00 N/A
ENST00000489086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.222±0.00 N/A N/A
ENST00000495548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.981±0.00
ENSG00000205444 ENST00000380106 0.039±0.00 0.082±0.00 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.072±0.00 0.145±0.01 N/A
ENSG00000216307 ENST00000403917 N/A N/A N/A N/A N/A 0.860±0.00 0.049±0.00 0.027±0.00 N/A N/A N/A 0.075±0.00 N/A 0.494±0.16
ENSG00000231811 ENST00000437430 0.284±0.00 N/A N/A N/A N/A 0.177±0.00 13.459±5.70 N/A N/A N/A N/A N/A 0.207±0.00 0.215±0.00
ENSG00000234817 ENST00000427049 0.137±0.00 0.068±0.00 0.020±0.00 0.070±0.00 0.100±0.00 0.070±0.05 0.102±0.06 0.079±0.00 0.032±0.01 0.063±0.01 0.045±0.00 0.086±0.03 0.039±0.02 0.376±0.05
ENSG00000237716 ENST00000427591 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A 5.759±4.57
ENSG00000260239 ENST00000563079 0.043±0.00 0.103±0.00 N/A 0.061±0.00 0.117±0.00 0.024±0.00 0.029±0.00 0.071±0.00 N/A 0.053±0.00 0.006±0.00 0.019±0.01 0.175±0.04 0.103±0.03
ENSG00000260673 ENST00000568110 N/A 0.045±0.00 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.095±0.00 0.075±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021414 ENSMUST00000021851 0.084±0.01 0.166±0.09 N/A 0.080±0.00 0.131±0.11 0.051±0.02 0.087±0.03 0.172±0.03 0.045±0.03 0.040±0.03 0.012±0.00 0.262±0.17 0.158±0.15 56.374±48.21
ENSMUSG00000021415 ENSMUST00000160279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A 50.861±10.93
ENSMUST00000160905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.827±0.00
ENSMUSG00000021416 ENSMUST00000021853 2.375±1.58 0.213±0.03 0.259±0.04 0.102±0.06 1.654±0.65 1.738±0.52 0.149±0.00 64.729±5.08 1.190±1.24 0.052±0.00 0.086±0.03 0.457±0.42 1.013±0.89 N/A
ENSMUST00000164155 1.320±0.66 0.379±0.16 N/A 1.070±0.00 1.227±0.39 0.577±0.15 0.064±0.02 13.056±1.53 0.609±0.47 0.076±0.00 0.094±0.04 0.216±0.02 0.363±0.12 N/A
ENSMUSG00000021417 ENSMUST00000021854 10.103±0.69 7.118±1.71 6.934±0.51 8.104±2.50 7.785±0.98 3.973±0.96 8.293±0.00 9.831±1.22 11.804±5.51 5.618±1.02 6.025±1.03 6.659±2.56 6.531±2.76 0.814±0.04
ENSMUST00000084345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110251 10.581±2.07 N/A 9.519±2.38 7.612±0.02 12.791±3.31 4.651±0.00 18.633±4.00 9.982±1.82 8.426±2.16 6.241±0.21 9.614±2.02 12.776±4.87 6.491±1.34 1.027±0.00
ENSMUST00000163280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164421 N/A N/A N/A N/A 61.618±0.00 N/A N/A N/A 52.392±4.41 N/A N/A N/A 19.125±0.00 N/A
ENSMUST00000166109 N/A N/A N/A N/A N/A 3.453±0.00 N/A N/A N/A N/A N/A 7.562±0.00 N/A 1.060±0.00
ENSMUST00000167036 N/A N/A N/A N/A 8.699±0.01 N/A N/A N/A 7.888±0.00 N/A N/A 7.136±0.00 N/A 1.267±0.16
ENSMUST00000169759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170989 N/A 24.320±1.32 N/A N/A 9.841±0.00 5.896±0.89 N/A N/A 20.535±4.41 5.497±0.00 N/A 8.700±3.73 N/A 1.332±0.00
ENSMUST00000171229 17.324±3.80 6.923±1.05 18.767±0.30 8.458±4.71 12.594±5.98 6.150±1.75 37.931±5.16 17.760±2.28 20.481±6.21 9.504±2.26 11.678±2.12 9.870±4.98 11.489±3.88 2.189±1.36
ENSMUST00000171258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178421 N/A N/A 8.994±0.00 N/A N/A 1.725±0.00 N/A N/A N/A N/A 4.771±0.60 6.059±1.17 6.105±0.00 0.886±0.15
ENSMUSG00000098209 ENSMUST00000182434 0.029±0.00 0.070±0.00 N/A 0.007±0.00 0.055±0.02 0.064±0.00 N/A 0.214±0.05 N/A N/A N/A 0.046±0.00 0.029±0.02 0.158±0.09
ENSMUSG00000102099 ENSMUST00000189140 N/A N/A N/A N/A 0.111±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A 3.896±1.63
ENSMUST00000189905 N/A N/A N/A N/A N/A 0.064±0.00 0.036±0.00 N/A N/A N/A N/A N/A N/A 0.062±0.00

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