C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00081G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2231 VISTA 9606 15:31003587-31608005
GeneTranscriptPositionBiotype
ENSG00000134160 (TRPM1)
transient receptor potential cation channel, subfamily M, member 1 		ENST00000256552 (TRPM1-004) 31001334-31101721 protein_coding
ENST00000397795 (TRPM1-001) 31001061-31101707 protein_coding
ENST00000542188 (TRPM1-201) 31001061-31161273 protein_coding
ENST00000557948 (TRPM1-010) 31028436-31033015 retained_intron
ENST00000558070 (TRPM1-009) 31060465-31062751 retained_intron
ENST00000558212 (TRPM1-011) 31026964-31031332 retained_intron
ENST00000558445 (TRPM1-008) 31002464-31160954 protein_coding
ENST00000558768 (TRPM1-007) 31001822-31068092 protein_coding
ENST00000559177 (TRPM1-002) 31002464-31160954 protein_coding
ENST00000559179 (TRPM1-003) 31069376-31101727 protein_coding
ENST00000560658 (TRPM1-005) 31060235-31101706 nonsense_mediated_decay
ENST00000560801 (TRPM1-006) 31001822-31068092 nonsense_mediated_decay
ENSG00000169918 (OTUD7A)
OTU deubiquitinase 7A 		ENST00000307050 (OTUD7A-001) 31475398-31655339 protein_coding
ENST00000558371 (OTUD7A-003) 31558183-31870578 retained_intron
ENST00000560536 (OTUD7A-002) 31555999-31870789 nonsense_mediated_decay
ENST00000560598 (OTUD7A-004) 31570018-31870677 protein_coding
ENSG00000169926 (KLF13)
Kruppel-like factor 13 		ENST00000307145 (KLF13-001) 31326855-31377899 protein_coding
ENST00000500533 (KLF13-007) 31392843-31404729 processed_transcript
ENST00000558225 (KLF13-005) 31393575-31435665 processed_transcript
ENST00000558673 (KLF13-006) 31376524-31377898 processed_transcript
ENST00000558844 (KLF13-002) 31366154-31372182 protein_coding
ENST00000558921 (KLF13-004) 31327567-31435586 processed_transcript
ENST00000560473 (KLF13-003) 31339933-31372443 protein_coding
ENST00000618680 (KLF13-201) 31327167-31372443 protein_coding
ENSG00000259179 (UBE2CP4)
ubiquitin-conjugating enzyme E2C pseudogene 4 		ENST00000561405 (UBE2CP4-001) 31420128-31420662 processed_pseudogene
ENSG00000259448 (RP11-16E12.1)
 ENST00000557928 (RP11-16E12.1-002) 31216021-31224445 lincRNA
ENST00000559292 (RP11-16E12.1-001) 31216020-31220720 lincRNA
ENSG00000259696 (RP11-126F18.2)
 ENST00000559109 (RP11-126F18.2-001) 31453201-31454139 processed_pseudogene
ENSG00000259720 (RP11-348B17.1)
 ENST00000558755 (RP11-348B17.1-002) 31026206-31035970 antisense
ENST00000561299 (RP11-348B17.1-001) 31002013-31042302 antisense
ENSG00000259772 (RP11-16E12.2)
 ENST00000558109 (RP11-16E12.2-003) 31222963-31229410 lincRNA
ENST00000558388 (RP11-16E12.2-001) 31222767-31230838 lincRNA
ENST00000559094 (RP11-16E12.2-002) 31222796-31230833 lincRNA
ENST00000559853 (RP11-16E12.2-004) 31222776-31229405 lincRNA
ENST00000560812 (RP11-16E12.2-005) 31221999-31229384 lincRNA
CIL_00081G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2231 VISTA 10090 7:63656077-64260826
GeneTranscriptPositionBiotype
ENSMUSG00000030523 (Trpm1)
transient receptor potential cation channel, subfamily M, member 1 		ENSMUST00000032737 (Trpm1-008) 64185555-64218735 protein_coding
ENSMUST00000085222 (Trpm1-003) 64153835-64269775 protein_coding
ENSMUST00000107515 (Trpm1-009) 64185584-64218735 protein_coding
ENSMUST00000107516 (Trpm1-007) 64185550-64224764 retained_intron
ENSMUST00000107519 (Trpm1-005) 64185552-64269757 protein_coding
ENSMUST00000107525 (Trpm1-001) 64153845-64269132 protein_coding
ENSMUST00000107527 (Trpm1-004) 64153928-64269132 protein_coding
ENSMUST00000124597 (Trpm1-017) 64244811-64268140 retained_intron
ENSMUST00000137650 (Trpm1-014) 64185553-64201969 protein_coding
ENSMUST00000138074 (Trpm1-012) 64226581-64242578 retained_intron
ENSMUST00000138609 (Trpm1-015) 64226948-64231280 processed_transcript
ENSMUST00000140277 (Trpm1-011) 64210023-64220356 retained_intron
ENSMUST00000141574 (Trpm1-006) 64185381-64211427 retained_intron
ENSMUST00000144996 (Trpm1-010) 64185601-64201942 protein_coding
ENSMUST00000146313 (Trpm1-013) 64185459-64199283 processed_transcript
ENSMUST00000153421 (Trpm1-002) 64153845-64226739 nonsense_mediated_decay
ENSMUST00000155787 (Trpm1-016) 64245024-64268020 processed_transcript
ENSMUST00000176392 (Trpm1-018) 64203062-64210889 processed_transcript
ENSMUST00000176548 (Trpm1-022) 64203062-64208329 processed_transcript
ENSMUST00000176623 (Trpm1-021) 64210909-64223760 protein_coding
ENSMUST00000177102 (Trpm1-201) 64185459-64224836 protein_coding
ENSMUST00000177295 (Trpm1-019) 64199262-64202085 processed_transcript
ENSMUSG00000033510 (Otud7a)
OTU domain containing 7A 		ENSMUST00000058476 (Otud7a-001) 63444751-63759028 protein_coding
ENSMUST00000176734 (Otud7a-003) 63444777-63617900 processed_transcript
ENSMUST00000177511 (Otud7a-004) 63754712-63757925 protein_coding
ENSMUST00000177534 (Otud7a-002) 63650815-63757989 protein_coding
ENSMUSG00000052040 (Klf13)
Kruppel-like factor 13 		ENSMUST00000063694 (Klf13-001) 63886347-63938915 protein_coding
ENSMUST00000183817 (Klf13-002) 63891400-63924870 protein_coding
ENSMUST00000183907 (Klf13-004) 63935399-63936332 retained_intron
ENSMUST00000185175 (Klf13-003) 63891383-63936301 protein_coding
ENSMUSG00000093542 (Gm20670)
predicted gene 20670 		ENSMUST00000175664 (Gm20670-001) 64057602-64062958 processed_transcript
ENSMUSG00000095061 (E030018B13Rik)
RIKEN cDNA E030018B13 gene 		ENSMUST00000177638 (E030018B13Rik-201) 63916857-63920539 protein_coding
ENSMUSG00000098708 (Gm27252)
predicted gene 27252 		ENSMUST00000183782 (Gm27252-002) 63896533-63899698 antisense
ENSMUST00000184360 (Gm27252-001) 63897974-63899529 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00081G_0001ENSG00000134160ENST00000256552ENST00000397795ENST00000557948ENST00000558070ENST00000558445ENST00000559179ENST00000560658ENST00000560801ENSG00000169918ENST00000307050ENST00000558371ENST00000560536ENST00000560598ENSG00000169926ENST00000307145ENST00000558673ENSG00000259179ENST00000561405ENSG00000259448ENST00000557928ENST00000559292ENSG00000259696ENST00000559109ENSG00000259720ENST00000558755ENST00000561299ENSG00000259772ENST00000558109ENST00000558388ENST00000559094ENST00000559853ENST00000560812CIL_00081G_0002ENSMUSG00000030523ENSMUST00000032737ENSMUST00000085222ENSMUST00000107515ENSMUST00000107516ENSMUST00000107519ENSMUST00000107525ENSMUST00000107527ENSMUST00000124597ENSMUST00000137650ENSMUST00000138074ENSMUST00000138609ENSMUST00000141574ENSMUST00000144996ENSMUST00000177102ENSMUSG00000033510ENSMUST00000058476ENSMUST00000176734ENSMUST00000177511ENSMUST00000177534ENSMUSG00000052040ENSMUST00000063694ENSMUSG00000093542ENSMUST00000175664ENSMUSG00000095061ENSMUST00000177638ENSMUSG00000098708ENSMUST00000183782ENSMUST00000184360
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134160 ENST00000256552 0.007±0.00 N/A N/A N/A 0.020±0.00 0.002±0.00 0.005±0.00 N/A N/A N/A N/A N/A 0.039±0.00 N/A
ENST00000397795 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A
ENST00000542188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557948 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558070 N/A N/A N/A N/A 0.052±0.00 0.083±0.00 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A
ENST00000558212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A
ENST00000558768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A
ENST00000560658 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 0.016±0.00 N/A
ENST00000560801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A
ENSG00000169918 ENST00000307050 N/A N/A 0.110±0.00 2.865±0.00 0.127±0.07 0.074±0.03 0.051±0.03 0.116±0.03 0.045±0.02 0.026±0.00 0.044±0.00 0.117±0.07 0.053±0.02 0.549±0.04
ENST00000558371 N/A N/A N/A N/A 0.159±0.00 N/A 0.061±0.00 N/A N/A N/A 0.199±0.00 N/A N/A N/A
ENST00000560536 N/A N/A N/A N/A N/A N/A 0.023±0.00 0.058±0.00 0.027±0.00 N/A N/A 0.256±0.00 0.012±0.00 0.375±0.00
ENST00000560598 N/A N/A N/A N/A 0.696±0.00 N/A N/A N/A 0.933±0.00 N/A N/A N/A N/A N/A
ENSG00000169926 ENST00000307145 2.306±0.00 2.856±0.00 N/A 10.825±9.12 1.899±0.06 1.783±0.80 7.430±5.51 4.342±0.00 7.075±6.02 14.912±0.00 5.805±0.00 5.203±3.46 4.698±1.77 1.842±0.46
ENST00000500533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.630±0.00 12.044±0.00 5.623±0.00
ENST00000558844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259179 ENST00000561405 N/A 0.059±0.00 N/A 0.063±0.00 0.432±0.00 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A 0.160±0.00
ENSG00000259448 ENST00000557928 N/A 0.547±0.00 N/A 1.073±0.00 N/A N/A N/A N/A 0.092±0.00 0.439±0.00 N/A 0.161±0.00 0.226±0.00 0.046±0.00
ENST00000559292 0.087±0.00 N/A N/A 0.308±0.19 0.718±0.44 0.547±0.44 N/A 0.117±0.00 0.080±0.00 0.525±0.31 N/A 0.157±0.10 0.040±0.01 0.097±0.00
ENSG00000259696 ENST00000559109 N/A 0.091±0.00 N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A 0.041±0.00 0.051±0.00 N/A 0.023±0.00
ENSG00000259720 ENST00000558755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 0.109±0.00 2.285±0.00
ENST00000561299 0.177±0.00 N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259772 ENST00000558109 N/A 0.713±0.00 N/A 0.123±0.00 0.148±0.00 N/A N/A 0.183±0.00 N/A N/A N/A 0.273±0.14 0.124±0.00 N/A
ENST00000558388 0.053±0.00 1.745±0.00 N/A N/A 0.143±0.00 0.102±0.00 N/A 0.106±0.00 N/A 0.339±0.00 N/A 0.447±0.42 0.053±0.00 0.085±0.05
ENST00000559094 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559853 0.026±0.00 N/A N/A N/A N/A 0.155±0.00 N/A N/A 0.114±0.00 1.075±0.00 N/A 0.079±0.00 N/A N/A
ENST00000560812 0.143±0.00 N/A N/A N/A 0.042±0.00 N/A N/A 0.432±0.00 N/A N/A N/A 0.142±0.04 N/A 0.056±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030523 ENSMUST00000032737 N/A N/A N/A 0.055±0.02 0.253±0.17 N/A N/A N/A 0.091±0.07 N/A N/A 0.064±0.00 0.038±0.00 N/A
ENSMUST00000085222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENSMUST00000107515 0.083±0.04 0.081±0.02 0.038±0.00 0.089±0.08 0.138±0.06 0.093±0.05 0.043±0.02 0.078±0.03 0.112±0.12 0.095±0.03 0.051±0.00 0.114±0.10 0.108±0.04 0.174±0.00
ENSMUST00000107516 N/A N/A N/A N/A 0.041±0.00 N/A 0.019±0.00 N/A N/A N/A 0.095±0.00 N/A 0.087±0.00 N/A
ENSMUST00000107519 0.028±0.00 N/A 0.006±0.00 0.020±0.00 0.019±0.00 N/A N/A 0.079±0.03 N/A 0.035±0.00 0.046±0.00 0.032±0.02 0.050±0.02 0.189±0.07
ENSMUST00000107525 0.013±0.00 N/A N/A N/A N/A N/A N/A 0.044±0.01 N/A 0.013±0.00 0.077±0.00 0.024±0.01 0.091±0.05 N/A
ENSMUST00000107527 N/A N/A 0.007±0.00 0.092±0.00 N/A 0.043±0.00 N/A 0.036±0.00 N/A 0.025±0.01 0.077±0.03 0.066±0.02 0.149±0.00 0.224±0.00
ENSMUST00000124597 N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A 0.028±0.00 0.125±0.00 0.127±0.05 0.232±0.10 0.134±0.00 N/A
ENSMUST00000137650 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A 0.108±0.00 N/A N/A
ENSMUST00000138074 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.021±0.00 N/A 0.046±0.02 N/A 0.173±0.02
ENSMUST00000138609 0.157±0.00 N/A N/A N/A N/A N/A N/A 0.729±0.00 N/A 0.234±0.13 N/A 0.276±0.00 N/A N/A
ENSMUST00000140277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141574 N/A 0.036±0.00 N/A N/A 0.061±0.01 0.070±0.00 N/A N/A 0.042±0.03 N/A 0.036±0.00 N/A N/A N/A
ENSMUST00000144996 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENSMUST00000146313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177102 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.097±0.00 N/A
ENSMUST00000177295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033510 ENSMUST00000058476 0.055±0.02 0.058±0.03 0.046±0.00 1.142±0.35 0.046±0.03 0.106±0.04 0.018±0.00 0.024±0.01 0.014±0.01 0.050±0.01 0.021±0.00 0.115±0.06 0.024±0.01 1.162±0.07
ENSMUST00000176734 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177511 0.054±0.00 N/A N/A N/A 0.157±0.00 N/A 0.082±0.00 N/A 0.038±0.00 0.186±0.00 0.122±0.01 0.210±0.05 0.030±0.00 8.040±0.00
ENSMUST00000177534 N/A N/A N/A 11.032±13.32 0.029±0.02 0.079±0.02 0.058±0.02 0.035±0.01 0.006±0.00 N/A 0.025±0.01 0.085±0.00 0.026±0.00 1.674±0.70
ENSMUSG00000052040 ENSMUST00000063694 16.412±1.48 24.227±2.15 5.212±1.39 6.027±1.13 29.353±9.39 19.216±0.98 6.545±2.14 11.009±0.61 5.459±2.48 37.544±4.27 1.526±0.40 18.421±5.63 5.802±1.40 0.681±0.40
ENSMUST00000183817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093542 ENSMUST00000175664 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A 0.109±0.00 1.557±0.00
ENSMUSG00000095061 ENSMUST00000177638 0.080±0.03 0.062±0.00 N/A 0.082±0.00 0.079±0.00 0.091±0.03 0.058±0.00 0.052±0.02 0.043±0.02 0.087±0.00 0.147±0.07 0.117±0.05 0.058±0.01 0.065±0.03
ENSMUSG00000098708 ENSMUST00000183782 0.528±0.00 0.521±0.04 0.546±0.05 0.308±0.00 N/A 0.131±0.00 1.309±0.28 0.256±0.00 0.233±0.15 0.791±0.00 0.460±0.14 0.795±0.40 0.149±0.08 4.803±3.24
ENSMUST00000184360 N/A 2.585±0.00 N/A N/A N/A 0.208±0.00 N/A N/A 0.360±0.00 N/A N/A 0.923±0.34 0.098±0.00 N/A

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