C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00085M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs364 VISTA 9606 17:36678794-37279927
GeneTranscriptPositionBiotype
ENSG00000273706 (LHX1)
LIM homeobox 1 		ENST00000614239 (LHX1-001) 36937475-36944612 protein_coding
ENST00000616237 (LHX1-003) 36938460-36941394 retained_intron
ENST00000619297 (LHX1-005) 36936785-36937846 processed_transcript
ENST00000619939 (LHX1-002) 36937635-36941531 retained_intron
ENST00000621767 (LHX1-004) 36942298-36943685 protein_coding
ENSG00000274308 (RP11-19G24.1)
 ENST00000610837 (RP11-19G24.1-001) 37140611-37141424 processed_pseudogene
ENSG00000275029 (RP11-19G24.3)
 ENST00000611897 (RP11-19G24.3-002) 37144136-37144463 processed_transcript
ENST00000615653 (RP11-19G24.3-001) 37143607-37144291 transcribed_processed_pseudogene
ENSG00000275613 (CTD-3194G12.2)
 ENST00000610398 (CTD-3194G12.2-001) 36722583-36726340 lincRNA
ENSG00000276508 (CTD-3194G12.1)
 ENST00000616810 (CTD-3194G12.1-001) 36684754-36685129 lincRNA
ENSG00000276707 (RP11-445F12.2)
 ENST00000614759 (RP11-445F12.2-001) 36940049-36943456 antisense
ENSG00000276810 (RP11-19G24.2)
 ENST00000620102 (RP11-19G24.2-001) 37162616-37163139 processed_pseudogene
ENSG00000277268 (RP11-445F12.1)
 ENST00000612281 (RP11-445F12.1-002) 36907288-36936652 antisense
ENST00000614277 (RP11-445F12.1-003) 36906995-36936658 antisense
ENST00000616341 (RP11-445F12.1-004) 36861674-36936661 antisense
ENST00000621428 (RP11-445F12.1-001) 36932109-36936622 antisense
ENSG00000277579 (CTC-268N12.3)
 ENST00000615419 (CTC-268N12.3-001) 37034668-37043252 sense_intronic
ENSG00000277589 (RP11-333J10.3)
 ENST00000620689 (RP11-333J10.3-001) 36998598-37000034 sense_intronic
ENSG00000277911 (RP11-333J10.2)
 ENST00000613270 (RP11-333J10.2-001) 36980167-36980422 sense_intronic
ENSG00000278638 (CTC-268N12.2)
 ENST00000619606 (CTC-268N12.2-001) 37045462-37052775 antisense
CIL_00085M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs364 VISTA 10090 11:84181126-84782244
GeneTranscriptPositionBiotype
ENSMUSG00000018697 (Aatf)
apoptosis antagonizing transcription factor 		ENSMUST00000018841 (Aatf-001) 84422855-84513522 protein_coding
ENSMUST00000127042 (Aatf-004) 84422883-84491550 processed_transcript
ENSMUST00000141093 (Aatf-003) 84442509-84449533 retained_intron
ENSMUST00000148434 (Aatf-002) 84466905-84513522 retained_intron
ENSMUSG00000018698 (Lhx1)
LIM homeobox protein 1 		ENSMUST00000018842 (Lhx1-001) 84518284-84525535 protein_coding
ENSMUST00000092827 (Lhx1-002) 84521896-84522711 protein_coding
ENSMUST00000176503 (Lhx1-003) 84519706-84522067 retained_intron
ENSMUST00000184646 (Lhx1-004) 84519442-84522331 protein_coding
ENSMUSG00000020532 (Acaca)
acetyl-Coenzyme A carboxylase alpha 		ENSMUST00000020843 (Acaca-201) 84195438-84401645 protein_coding
ENSMUST00000103201 (Acaca-001) 84173122-84401651 protein_coding
ENSMUST00000130012 (Acaca-004) 84179831-84231692 protein_coding
ENSMUST00000133811 (Acaca-005) 84129672-84214290 protein_coding
ENSMUST00000136463 (Acaca-002) 84179858-84214184 protein_coding
ENSMUST00000137500 (Acaca-003) 84179831-84214195 protein_coding
ENSMUST00000183548 (Acaca-007) 84173354-84233808 retained_intron
ENSMUST00000183887 (Acaca-008) 84280455-84311401 protein_coding
ENSMUST00000184534 (Acaca-006) 84129700-84133111 processed_transcript
ENSMUSG00000085044 (1700109G15Rik)
RIKEN cDNA 1700109G15 gene 		ENSMUST00000150735 (1700109G15Rik-001) 84716976-84720432 lincRNA
ENSMUSG00000087211 (Lhx1os)
LIM homeobox 1, opposite strand 		ENSMUST00000126072 (Lhx1os-003) 84525669-84535831 lincRNA
ENSMUST00000128121 (Lhx1os-001) 84525684-84535830 lincRNA
ENSMUST00000134800 (Lhx1os-002) 84525660-84535831 lincRNA
ENSMUSG00000087407 (Gm11431)
predicted gene 11431 		ENSMUST00000155046 (Gm11431-001) 84763855-84777829 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085M_0001ENSG00000273706ENST00000614239ENST00000619297ENST00000619939ENST00000621767ENSG00000274308ENST00000610837ENSG00000275029ENST00000611897ENST00000615653ENSG00000275613ENST00000610398ENSG00000276508ENST00000616810ENSG00000276707ENST00000614759ENSG00000276810ENST00000620102ENSG00000277268ENST00000612281ENST00000614277ENST00000621428ENSG00000277579ENST00000615419ENSG00000277589ENST00000620689ENSG00000277911ENST00000613270ENSG00000278638ENST00000619606CIL_00085M_0002ENSMUSG00000018697ENSMUST00000018841ENSMUST00000127042ENSMUST00000148434ENSMUSG00000018698ENSMUST00000018842ENSMUST00000092827ENSMUST00000176503ENSMUST00000184646ENSMUSG00000020532ENSMUST00000020843ENSMUST00000103201ENSMUSG00000085044ENSMUST00000150735ENSMUSG00000087211ENSMUST00000126072ENSMUST00000128121ENSMUST00000134800ENSMUSG00000087407ENSMUST00000155046
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000273706 ENST00000614239 N/A N/A 0.843±0.00 0.022±0.00 N/A N/A N/A 4.362±0.00 N/A N/A N/A 0.531±0.00 0.016±0.00 0.152±0.05
ENST00000616237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000619939 N/A N/A N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621767 N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274308 ENST00000610837 0.069±0.00 0.196±0.00 N/A 0.055±0.00 0.326±0.27 N/A N/A 0.075±0.00 0.506±0.00 0.185±0.07 0.021±0.00 0.126±0.06 N/A 0.157±0.00
ENSG00000275029 ENST00000611897 N/A 0.095±0.00 N/A 0.131±0.00 1.860±0.00 1.162±0.00 0.090±0.04 0.109±0.00 1.211±0.00 0.155±0.00 N/A 2.717±2.31 N/A 0.392±0.11
ENST00000615653 0.018±0.00 0.061±0.00 0.218±0.00 0.129±0.01 0.293±0.16 0.070±0.00 N/A 0.694±0.64 0.752±0.00 0.368±0.00 0.504±0.00 0.288±0.15 0.146±0.00 0.211±0.08
ENSG00000275613 ENST00000610398 N/A N/A N/A 0.457±0.00 N/A N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A 0.642±0.13
ENSG00000276508 ENST00000616810 N/A 0.107±0.00 0.884±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.519±0.13
ENSG00000276707 ENST00000614759 N/A N/A N/A 0.086±0.00 N/A N/A N/A 7.457±0.00 N/A N/A N/A N/A 0.128±0.00 N/A
ENSG00000276810 ENST00000620102 N/A 0.034±0.00 N/A 0.249±0.18 0.469±0.00 0.540±0.00 N/A 0.034±0.00 0.587±0.00 N/A N/A 0.164±0.06 N/A 0.304±0.00
ENSG00000277268 ENST00000612281 N/A N/A 0.717±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00
ENST00000616341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621428 N/A N/A N/A N/A N/A N/A N/A 13.323±0.00 N/A N/A N/A 0.731±0.00 0.050±0.00 0.208±0.08
ENSG00000277579 ENST00000615419 0.027±0.00 0.259±0.00 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A 0.136±0.00 0.442±0.00 0.168±0.00 0.158±0.00
ENSG00000277589 ENST00000620689 0.045±0.00 0.427±0.00 N/A 0.059±0.00 0.241±0.09 0.351±0.00 0.084±0.00 0.216±0.00 0.098±0.05 0.043±0.01 0.212±0.00 0.188±0.23 0.107±0.00 0.121±0.05
ENSG00000277911 ENST00000613270 N/A 0.524±0.00 N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A 0.178±0.00 N/A N/A
ENSG00000278638 ENST00000619606 0.044±0.00 0.413±0.00 N/A 0.149±0.00 0.048±0.00 0.061±0.00 0.147±0.00 0.093±0.00 N/A N/A N/A 0.100±0.02 N/A 0.104±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018697 ENSMUST00000018841 2.472±1.04 3.732±1.70 3.068±0.81 3.670±1.23 2.933±1.85 4.184±1.26 1.140±0.45 4.055±0.91 3.932±2.00 2.559±0.33 3.600±0.33 7.220±5.17 11.521±6.67 19.515±29.01
ENSMUST00000127042 N/A N/A N/A N/A 2.260±0.00 N/A 0.346±0.00 5.108±0.27 2.170±0.30 N/A N/A N/A 8.672±0.00 5.458±0.84
ENSMUST00000141093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148434 N/A 1.026±0.25 N/A N/A 0.457±0.16 0.642±0.18 N/A N/A 0.569±0.14 0.530±0.17 N/A 1.593±0.89 0.757±0.08 N/A
ENSMUSG00000018698 ENSMUST00000018842 N/A 0.029±0.00 N/A 8.959±6.32 N/A N/A N/A 2.508±0.58 0.015±0.01 N/A N/A 0.041±0.02 0.048±0.01 0.190±0.04
ENSMUST00000092827 N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.02 N/A N/A N/A N/A N/A
ENSMUST00000176503 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A 0.164±0.08 N/A N/A
ENSMUST00000184646 N/A N/A N/A N/A 0.093±0.00 N/A 0.022±0.00 3.981±1.22 0.013±0.01 0.025±0.00 N/A 0.095±0.07 0.068±0.00 1.893±0.56
ENSMUSG00000020532 ENSMUST00000020843 120.182±39.53 56.883±25.01 6.088±0.49 10.220±3.50 158.072±23.54 3.682±1.73 3.163±1.26 12.394±4.26 6.013±3.49 14.199±1.82 1.009±0.42 14.142±5.39 3.889±2.15 4.076±0.85
ENSMUST00000103201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.185±0.00 N/A N/A
ENSMUST00000130012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085044 ENSMUST00000150735 0.190±0.00 N/A 0.036±0.00 0.103±0.03 N/A N/A N/A 0.195±0.00 0.067±0.05 N/A N/A N/A N/A 10.052±5.25
ENSMUSG00000087211 ENSMUST00000126072 N/A N/A N/A N/A N/A N/A N/A 0.859±0.00 N/A N/A N/A N/A 0.063±0.00 0.068±0.00
ENSMUST00000128121 N/A N/A N/A 0.280±0.00 N/A N/A N/A 1.842±0.00 N/A N/A N/A N/A 0.050±0.00 0.247±0.09
ENSMUST00000134800 N/A N/A N/A 0.711±0.00 N/A N/A N/A 5.824±1.15 N/A N/A N/A 0.264±0.01 0.132±0.03 0.397±0.00
ENSMUSG00000087407 ENSMUST00000155046 N/A N/A N/A 0.029±0.00 0.137±0.00 N/A 0.102±0.00 N/A N/A N/A N/A N/A 0.019±0.00 0.115±0.00

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