C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00085Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1787 VISTA 9606 3:148067478-148670635
GeneTranscriptPositionBiotype
ENSG00000205412 (HNRNPA1P20)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 		ENST00000484852 (HNRNPA1P20-001) 148166344-148167298 processed_pseudogene
ENSG00000241131 (RP11-639B1.1)
 ENST00000490465 (RP11-639B1.1-001) 148078159-148088029 lincRNA
ENSG00000241792 (RP11-501O2.1)
 ENST00000476987 (RP11-501O2.1-001) 148093175-148127233 lincRNA
ENSG00000242440 (RP11-501O2.5)
 ENST00000469812 (RP11-501O2.5-001) 148280891-148312160 lincRNA
ENST00000481334 (RP11-501O2.5-002) 148312147-148399956 lincRNA
ENSG00000243347 (RP11-501O2.4)
 ENST00000460324 (RP11-501O2.4-001) 148195729-148280098 lincRNA
ENSG00000244650 (RP11-501O2.3)
 ENST00000470219 (RP11-501O2.3-001) 148191719-148226606 lincRNA
ENST00000477153 (RP11-501O2.3-002) 148160911-148226595 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00085Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1787 VISTA 10090 9:90013787-90616367
GeneTranscriptPositionBiotype
ENSMUSG00000032356 (Rasgrf1)
RAS protein-specific guanine nucleotide-releasing factor 1 		ENSMUST00000034909 (Rasgrf1-002) 89909909-89915834 protein_coding
ENSMUST00000034912 (Rasgrf1-001) 89909909-90026977 protein_coding
ENSMUST00000189545 (Rasgrf1-003) 89909908-89915847 protein_coding
ENSMUST00000190073 (Rasgrf1-004) 89909912-89926740 retained_intron
ENSMUSG00000032359 (Ctsh)
cathepsin H 		ENSMUST00000034915 (Ctsh-001) 90054267-90076089 protein_coding
ENSMUST00000123320 (Ctsh-003) 90054538-90076087 nonsense_mediated_decay
ENSMUST00000127842 (Ctsh-002) 90054506-90076087 retained_intron
ENSMUST00000132718 (Ctsh-004) 90054152-90065422 protein_coding
ENSMUST00000142750 (Ctsh-006) 90062522-90071885 retained_intron
ENSMUST00000143172 (Ctsh-005) 90054537-90064239 protein_coding
ENSMUST00000151219 (Ctsh-007) 90071696-90075749 retained_intron
ENSMUST00000185459 (Ctsh-011) 90054559-90075741 protein_coding
ENSMUST00000186126 (Ctsh-008) 90054521-90055338 retained_intron
ENSMUST00000187437 (Ctsh-009) 90060153-90061623 retained_intron
ENSMUST00000190338 (Ctsh-010) 90054554-90067344 retained_intron
ENSMUSG00000032363 (Adamts7)
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 		ENSMUST00000113059 (Adamts7-001) 90163069-90200100 protein_coding
ENSMUST00000113060 (Adamts7-003) 90163226-90200102 protein_coding
ENSMUST00000124441 (Adamts7-004) 90195128-90200097 retained_intron
ENSMUST00000134996 (Adamts7-002) 90163124-90200100 nonsense_mediated_decay
ENSMUST00000138227 (Adamts7-006) 90190984-90193487 processed_transcript
ENSMUST00000144943 (Adamts7-005) 90188654-90191565 retained_intron
ENSMUST00000147250 (Adamts7-010) 90163202-90199990 protein_coding
ENSMUST00000167122 (Adamts7-008) 90163078-90208071 protein_coding
ENSMUSG00000037410 (Tbc1d2b)
TBC1 domain family, member 2B 		ENSMUST00000041767 (Tbc1d2b-001) 90202027-90270769 protein_coding
ENSMUST00000128874 (Tbc1d2b-002) 90238280-90270771 protein_coding
ENSMUST00000144348 (Tbc1d2b-003) 90229053-90270804 nonsense_mediated_decay
ENSMUST00000144646 (Tbc1d2b-004) 90241163-90255927 processed_transcript
ENSMUSG00000062270 (Morf4l1)
mortality factor 4 like 1 		ENSMUST00000085248 (Morf4l1-002) 90091665-90114715 protein_coding
ENSMUST00000169860 (Morf4l1-001) 90091665-90114774 protein_coding
ENSMUST00000185433 (Morf4l1-003) 90107637-90114583 retained_intron
ENSMUST00000187771 (Morf4l1-013) 90092402-90114289 processed_transcript
ENSMUST00000188905 (Morf4l1-012) 90097886-90114529 processed_transcript
ENSMUST00000189089 (Morf4l1-005) 90094178-90095902 retained_intron
ENSMUST00000189241 (Morf4l1-010) 90101911-90114610 retained_intron
ENSMUST00000189420 (Morf4l1-006) 90096983-90097889 retained_intron
ENSMUST00000190345 (Morf4l1-008) 90097886-90114698 nonsense_mediated_decay
ENSMUST00000190377 (Morf4l1-004) 90091671-90114640 retained_intron
ENSMUST00000191189 (Morf4l1-014) 90092155-90114744 protein_coding
ENSMUST00000191353 (Morf4l1-009) 90097408-90114659 protein_coding
ENSMUSG00000081520 (Gm16200)
predicted gene 16200 		ENSMUST00000120385 (Gm16200-001) 90221295-90221625 processed_pseudogene
ENSMUSG00000088976 (Gm23759)
predicted gene, 23759 		ENSMUST00000158351 (Gm23759-201) 90031307-90031574 misc_RNA
ENSMUSG00000096647 (Gm6223)
predicted gene 6223 		ENSMUST00000178436 (Gm6223-001) 90118937-90119807 processed_pseudogene
ENSMUSG00000100060 (RP23-118J13.2)
predicted gene, 17944 		ENSMUST00000186351 (RP23-118J13.2-001) 90033243-90033885 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085Y_0001ENSG00000205412ENST00000484852ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000244650ENST00000470219ENST00000477153CIL_00085Y_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085Y_0001ENSG00000205412ENST00000484852ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000244650ENST00000470219ENST00000477153CIL_00085Y_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205412 ENST00000484852 0.039±0.00 0.097±0.00 N/A 0.028±0.00 0.014±0.00 0.013±0.00 N/A N/A N/A N/A 0.049±0.00 0.017±0.00 N/A 0.122±0.03
ENSG00000241131 ENST00000490465 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 6.451±3.50
ENSG00000241792 ENST00000476987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.02
ENSG00000242440 ENST00000469812 0.053±0.00 N/A N/A N/A N/A N/A 0.049±0.00 N/A 0.047±0.00 0.151±0.00 0.047±0.00 N/A 0.146±0.00 1.107±0.00
ENST00000481334 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 0.357±0.00
ENSG00000243347 ENST00000460324 N/A N/A N/A 0.055±0.00 N/A 0.018±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.492±0.27
ENSG00000244650 ENST00000470219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00
ENST00000477153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032356 ENSMUST00000034909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A
ENSMUST00000034912 0.180±0.20 1.897±0.63 0.164±0.00 60.495±84.99 2.395±0.41 0.032±0.01 0.015±0.00 0.010±0.00 0.012±0.01 0.192±0.12 0.010±0.00 0.212±0.11 0.352±0.24 0.444±0.22
ENSMUST00000189545 0.210±0.20 2.514±0.60 0.226±0.03 0.836±0.01 2.742±0.32 0.011±0.00 0.005±0.00 0.009±0.01 0.009±0.01 0.163±0.01 0.011±0.00 0.079±0.03 0.138±0.07 N/A
ENSMUST00000190073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032359 ENSMUST00000034915 26.450±5.40 17.588±4.88 51.111±5.19 N/A 23.507±3.30 10.572±4.43 6.194±2.38 23.200±0.00 37.684±23.83 34.489±1.64 0.715±0.14 10.642±4.39 99.204±28.15 2.559±0.71
ENSMUST00000123320 N/A N/A 18.735±0.00 2.641±0.00 33.950±0.00 N/A 6.343±0.00 N/A 15.860±0.00 N/A 0.727±0.00 29.584±6.57 3.598±1.43 0.246±0.00
ENSMUST00000127842 2.578±0.38 1.655±0.00 N/A N/A 4.951±1.04 N/A 0.794±0.06 N/A N/A 6.266±0.89 N/A 2.401±0.00 N/A 0.049±0.00
ENSMUST00000132718 N/A 26.775±6.05 N/A N/A 51.225±4.99 26.460±5.34 N/A 39.423±3.63 43.488±0.00 64.753±9.44 N/A 21.018±3.00 N/A N/A
ENSMUST00000142750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.158±0.89 N/A N/A
ENSMUST00000143172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151219 N/A N/A N/A 5.805±0.00 N/A N/A N/A N/A N/A N/A N/A 31.762±0.00 22.164±18.28 5.745±0.00
ENSMUST00000185459 N/A N/A N/A N/A 14.750±0.00 N/A N/A N/A N/A N/A N/A 7.243±0.00 N/A N/A
ENSMUST00000186126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032363 ENSMUST00000113059 6.721±4.10 2.229±0.12 N/A 3.877±0.80 3.289±0.04 2.154±0.18 4.720±1.05 1.904±0.21 1.615±0.68 N/A N/A 5.303±0.74 0.803±0.00 0.421±0.09
ENSMUST00000113060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.17
ENSMUST00000124441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134996 N/A N/A N/A N/A N/A N/A 2.354±0.25 N/A N/A N/A 0.250±0.00 N/A N/A N/A
ENSMUST00000138227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147250 5.922±0.35 2.400±0.00 N/A 2.638±0.63 N/A N/A N/A N/A 1.978±0.42 N/A N/A 3.995±0.00 0.831±0.20 0.780±0.21
ENSMUST00000167122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037410 ENSMUST00000041767 17.957±5.18 14.190±2.45 17.259±3.40 3.437±2.13 19.672±7.01 11.489±1.22 3.330±0.98 7.370±2.27 6.385±1.45 25.490±4.62 0.909±0.36 19.857±4.21 2.691±0.99 0.844±0.22
ENSMUST00000128874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144348 N/A 22.237±0.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062270 ENSMUST00000085248 N/A 5.248±0.00 N/A N/A N/A 3.844±0.92 N/A N/A 6.409±0.00 N/A N/A 9.742±5.24 N/A N/A
ENSMUST00000169860 68.937±13.31 15.123±2.20 189.042±9.02 135.564±62.99 48.065±21.26 18.906±5.78 66.672±8.72 54.056±9.73 76.581±40.99 61.607±12.79 99.248±12.18 39.210±36.36 107.923±53.46 161.008±62.76
ENSMUST00000185433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187771 N/A N/A N/A 185.492±0.00 N/A N/A N/A N/A N/A N/A N/A 155.301±36.04 136.561±74.21 1119.810±0.00
ENSMUST00000188905 N/A N/A N/A 152.667±0.00 N/A N/A N/A N/A N/A N/A N/A 172.692±0.00 106.098±0.00 975.768±0.00
ENSMUST00000189089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190377 N/A 2.107±0.46 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.586±0.68 N/A N/A
ENSMUST00000191189 N/A 5.896±0.82 N/A N/A 13.641±0.71 8.506±2.74 N/A 11.829±1.36 N/A N/A N/A 12.084±3.43 N/A 193.959±5.27
ENSMUST00000191353 N/A N/A N/A 122.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 377.031±0.00
ENSMUSG00000081520 ENSMUST00000120385 0.263±0.00 N/A 0.265±0.21 0.054±0.00 0.352±0.00 N/A N/A 0.339±0.12 0.242±0.11 0.379±0.00 N/A 0.330±0.15 0.125±0.07 N/A
ENSMUSG00000088976 ENSMUST00000158351 0.742±0.25 N/A 0.155±0.00 N/A N/A N/A 0.811±0.00 N/A N/A 0.352±0.00 N/A N/A N/A N/A
ENSMUSG00000096647 ENSMUST00000178436 0.145±0.07 0.944±0.58 0.054±0.02 0.191±0.08 0.589±0.50 0.395±0.23 0.279±0.03 0.249±0.13 0.491±0.47 0.166±0.04 0.057±0.01 0.697±0.44 0.040±0.02 0.567±0.23
ENSMUSG00000100060 ENSMUST00000186351 0.172±0.12 N/A 0.081±0.04 N/A 0.283±0.12 0.139±0.05 N/A 0.058±0.00 0.112±0.06 0.102±0.04 N/A 0.279±0.12 0.024±0.00 N/A

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