C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00086N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1395 VISTA 9606 9:68507553-69110512
GeneTranscriptPositionBiotype
ENSG00000107242 (PIP5K1B)
phosphatidylinositol-4-phosphate 5-kinase, type I, beta 		ENST00000265382 (PIP5K1B-001) 68705700-69009175 protein_coding
ENST00000377284 (PIP5K1B-004) 68739834-68876787 protein_coding
ENST00000437200 (PIP5K1B-005) 68741584-68894354 protein_coding
ENST00000440050 (PIP5K1B-003) 68742255-68889133 protein_coding
ENST00000472907 (PIP5K1B-006) 68705985-68786160 processed_transcript
ENST00000474356 (PIP5K1B-007) 68705986-68708141 processed_transcript
ENST00000478500 (PIP5K1B-002) 68742255-69009176 nonsense_mediated_decay
ENST00000541509 (PIP5K1B-201) 68705414-69009174 protein_coding
ENSG00000165059 (PRKACG)
protein kinase, cAMP-dependent, catalytic, gamma 		ENST00000377276 (PRKACG-001) 69012505-69014113 protein_coding
ENSG00000165060 (FXN)
frataxin 		ENST00000377270 (FXN-001) 69035259-69074213 protein_coding
ENST00000396364 (FXN-201) 69035563-69100178 protein_coding
ENST00000396366 (FXN-004) 69035762-69073022 protein_coding
ENST00000484259 (FXN-005) 69046407-69072796 protein_coding
ENST00000498653 (FXN-003) 69036161-69073105 protein_coding
ENSG00000181778 (TMEM252)
transmembrane protein 252 		ENST00000377311 (TMEM252-001) 68536580-68540867 protein_coding
ENSG00000187866 (FAM122A)
family with sequence similarity 122A 		ENST00000394264 (FAM122A-001) 68780055-68784608 protein_coding
ENSG00000207000 (RNU6-820P)
RNA, U6 small nuclear 820, pseudogene 		ENST00000384273 (RNU6-820P-201) 68935873-68935979 snRNA
ENSG00000224025 (RP11-274B18.3)
 ENST00000436315 (RP11-274B18.3-001) 68609125-68611984 processed_pseudogene
ENSG00000226337 (RP11-274B18.4)
 ENST00000413269 (RP11-274B18.4-001) 68541036-68644442 lincRNA
ENSG00000234506 (LINC01506)
long intergenic non-protein coding RNA 1506 		ENST00000432148 (LINC01506-001) 68543541-68546116 lincRNA
ENST00000446290 (LINC01506-002) 68543541-68546589 lincRNA
ENSG00000236998 (RP11-203L2.3)
 ENST00000424795 (RP11-203L2.3-001) 68788307-68789670 processed_pseudogene
ENSG00000270236 (RP11-265B8.5)
 ENST00000605734 (RP11-265B8.5-001) 69107926-69108217 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00086N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1395 VISTA 10090 19:24151986-24754280
GeneTranscriptPositionBiotype
ENSMUSG00000024812 (Tjp2)
tight junction protein 2 		ENSMUST00000099558 (Tjp2-201) 24094523-24225026 protein_coding
ENSMUSG00000024867 (Pip5k1b)
phosphatidylinositol-4-phosphate 5-kinase, type 1 beta 		ENSMUST00000025800 (Pip5k1b-001) 24294794-24555872 protein_coding
ENSMUST00000112673 (Pip5k1b-002) 24294794-24555842 protein_coding
ENSMUST00000134360 (Pip5k1b-005) 24295397-24317342 processed_transcript
ENSMUST00000145829 (Pip5k1b-004) 24435386-24555789 processed_transcript
ENSMUST00000156814 (Pip5k1b-003) 24396161-24555838 retained_intron
ENSMUSG00000041731 (Pgm5)
phosphoglucomutase 5 		ENSMUST00000047666 (Pgm5-001) 24683016-24861855 protein_coding
ENSMUST00000129127 (Pgm5-003) 24816231-24861652 retained_intron
ENSMUST00000133692 (Pgm5-004) 24684551-24763078 processed_transcript
ENSMUST00000150339 (Pgm5-002) 24816130-24861687 retained_intron
ENSMUSG00000048572 (Tmem252)
transmembrane protein 252 		ENSMUST00000057243 (Tmem252-201) 24674008-24679661 protein_coding
ENSMUSG00000059363 (Fxn)
frataxin 		ENSMUST00000081333 (Fxn-001) 24261453-24280605 protein_coding
ENSMUST00000123684 (Fxn-002) 24261501-24280568 nonsense_mediated_decay
ENSMUST00000132688 (Fxn-003) 24261862-24278171 retained_intron
ENSMUSG00000074922 (Fam122a)
family with sequence similarity 122, member A 		ENSMUST00000099556 (Fam122a-201) 24476502-24477356 protein_coding
ENSMUSG00000082107 (Gm16216)
predicted gene 16216 		ENSMUST00000118970 (Gm16216-001) 24289716-24290826 processed_pseudogene
ENSMUSG00000085003 (Pip5k1bos)
phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, opposite strand 		ENSMUST00000126936 (Pip5k1bos-001) 24416009-24430329 antisense
ENSMUSG00000097950 (Gm17800)
predicted gene, 17800 		ENSMUST00000182466 (Gm17800-001) 24692400-24693370 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086N_0001ENSG00000107242ENST00000265382ENST00000377284ENST00000478500ENST00000541509ENSG00000165059ENST00000377276ENSG00000165060ENST00000377270ENST00000396366ENST00000484259ENST00000498653ENSG00000181778ENST00000377311ENSG00000187866ENST00000394264ENSG00000207000ENST00000384273ENSG00000224025ENST00000436315ENSG00000226337ENST00000413269ENSG00000234506ENST00000432148ENST00000446290ENSG00000236998ENST00000424795ENSG00000270236ENST00000605734CIL_00086N_0002ENSMUSG00000024812ENSMUST00000099558ENSMUSG00000024867ENSMUST00000025800ENSMUST00000112673ENSMUST00000134360ENSMUSG00000041731ENSMUST00000047666ENSMUST00000129127ENSMUST00000133692ENSMUST00000150339ENSMUSG00000048572ENSMUST00000057243ENSMUSG00000059363ENSMUST00000081333ENSMUST00000123684ENSMUST00000132688ENSMUSG00000074922ENSMUST00000099556ENSMUSG00000082107ENSMUST00000118970ENSMUSG00000085003ENSMUST00000126936ENSMUSG00000097950ENSMUST00000182466
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107242 ENST00000265382 0.960±0.00 0.314±0.00 N/A 3.435±0.00 0.706±0.13 1.931±1.04 6.319±4.85 3.279±0.00 N/A 1.697±0.71 0.195±0.00 1.664±0.69 2.914±0.69 7.179±5.63
ENST00000377284 N/A N/A 0.929±0.00 N/A 2.988±0.00 N/A 4.547±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000437200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A
ENST00000541509 N/A N/A N/A 1.435±0.00 N/A N/A N/A N/A 0.069±0.00 1.327±0.82 0.117±0.00 1.184±0.74 0.904±0.22 N/A
ENSG00000165059 ENST00000377276 N/A 0.043±0.00 N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A 15.944±1.59
ENSG00000165060 ENST00000377270 0.234±0.00 N/A N/A N/A 0.067±0.00 0.061±0.00 N/A 0.252±0.00 0.896±0.00 N/A 0.347±0.00 1.826±0.00 N/A 0.495±0.00
ENST00000396364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396366 0.795±0.00 2.703±0.00 N/A 0.318±0.00 1.197±0.38 1.109±0.00 4.832±0.00 2.364±0.00 3.463±2.95 1.028±0.17 2.450±0.78 5.687±3.07 2.065±0.38 3.684±0.00
ENST00000484259 N/A 5.073±0.00 N/A N/A 4.802±0.00 N/A N/A N/A N/A 1.470±0.00 N/A 0.864±0.00 N/A N/A
ENST00000498653 1.240±0.00 1.604±0.00 0.299±0.00 1.625±0.53 1.957±0.00 2.282±0.00 4.809±0.00 2.367±0.24 4.945±4.68 1.287±0.00 1.021±0.00 6.786±3.93 5.813±1.44 5.073±0.71
ENSG00000181778 ENST00000377311 0.559±0.00 1.400±0.00 2.546±0.00 0.028±0.00 0.318±0.06 0.698±0.00 0.047±0.00 N/A 1.058±0.97 0.066±0.00 0.399±0.00 0.237±0.16 0.303±0.27 0.038±0.00
ENSG00000187866 ENST00000394264 3.385±0.00 2.644±0.00 3.207±0.00 2.604±0.16 3.898±0.00 3.587±0.36 2.023±0.94 2.780±1.29 2.007±0.05 3.234±1.44 1.909±0.85 3.150±1.69 4.395±0.88 3.157±1.08
ENSG00000207000 ENST00000384273 N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224025 ENST00000436315 0.005±0.00 N/A 0.166±0.00 N/A N/A 0.137±0.00 N/A 0.024±0.00 N/A N/A N/A 0.008±0.00 N/A 0.009±0.00
ENSG00000226337 ENST00000413269 N/A 0.083±0.00 0.330±0.00 N/A N/A N/A N/A 0.289±0.00 N/A 0.073±0.02 N/A N/A N/A 0.080±0.04
ENSG00000234506 ENST00000432148 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.503±0.00 N/A N/A N/A 0.056±0.00
ENST00000446290 0.222±0.00 0.045±0.00 N/A N/A N/A 0.041±0.00 0.083±0.00 0.089±0.00 N/A 1.013±0.00 N/A 0.117±0.01 0.760±0.26 0.124±0.00
ENSG00000236998 ENST00000424795 0.039±0.00 0.060±0.00 0.279±0.00 0.306±0.00 0.146±0.09 1.315±0.00 0.311±0.25 N/A 0.045±0.00 0.284±0.20 0.206±0.00 0.216±0.28 0.199±0.00 0.038±0.01
ENSG00000270236 ENST00000605734 N/A 0.053±0.00 N/A 0.056±0.00 0.428±0.00 N/A 0.049±0.00 N/A N/A N/A N/A 0.430±0.34 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024812 ENSMUST00000099558 1.964±1.14 2.319±0.05 9.345±0.00 7.627±0.00 1.530±0.95 5.456±0.53 N/A N/A 0.628±0.34 5.866±0.00 0.960±0.25 3.290±1.51 11.283±8.50 0.712±0.00
ENSMUSG00000024867 ENSMUST00000025800 1.208±1.09 4.363±0.89 0.706±0.06 1.468±0.82 0.513±0.24 18.134±1.73 6.784±1.63 2.072±0.53 5.805±3.56 5.945±0.65 0.099±0.01 4.995±1.75 5.513±2.31 2.798±1.01
ENSMUST00000112673 0.113±0.00 N/A N/A 2.488±0.00 0.183±0.00 N/A N/A N/A 0.020±0.00 N/A 0.135±0.00 3.230±0.00 1.575±0.57 0.174±0.00
ENSMUST00000134360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.079±0.00
ENSMUST00000145829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041731 ENSMUST00000047666 22.863±18.42 7.059±2.81 98.137±1.99 1.383±0.80 2.467±0.87 40.953±7.22 19.339±2.01 4.047±0.71 0.262±0.16 13.565±2.59 2.910±0.79 29.308±14.97 1.617±2.57 1.287±1.10
ENSMUST00000129127 N/A N/A N/A N/A 0.875±0.00 N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A
ENSMUST00000133692 N/A N/A N/A N/A 3.128±1.28 N/A N/A N/A 0.356±0.00 N/A N/A N/A 0.527±0.00 N/A
ENSMUST00000150339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 0.194±0.00
ENSMUSG00000048572 ENSMUST00000057243 2.269±0.20 0.799±0.19 67.724±14.44 0.313±0.01 0.905±0.45 2.626±0.00 N/A 11.426±4.42 0.130±0.08 2.422±1.06 1.305±0.24 2.576±0.77 2.161±2.91 0.317±0.27
ENSMUSG00000059363 ENSMUST00000081333 5.838±1.40 26.797±1.94 4.131±0.52 6.249±2.06 5.519±1.43 5.706±1.64 7.160±2.94 10.119±3.21 10.626±2.52 2.649±0.09 9.493±1.58 8.146±1.98 5.204±2.63 1.807±0.77
ENSMUST00000123684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.306±0.30 N/A
ENSMUST00000132688 N/A N/A N/A N/A 0.440±0.00 N/A N/A N/A N/A 0.458±0.07 N/A 0.817±0.19 N/A N/A
ENSMUSG00000074922 ENSMUST00000099556 14.160±0.37 37.962±7.64 8.512±0.00 4.341±1.01 16.028±6.41 12.202±1.03 11.098±1.24 15.253±1.41 10.271±3.57 15.307±2.34 6.999±0.75 18.870±6.66 7.934±4.24 9.501±3.05
ENSMUSG00000082107 ENSMUST00000118970 0.022±0.00 N/A 0.043±0.03 0.063±0.03 0.044±0.01 N/A N/A 0.021±0.00 0.113±0.15 0.027±0.00 0.026±0.00 0.056±0.01 0.040±0.02 0.014±0.00
ENSMUSG00000085003 ENSMUST00000126936 N/A 0.258±0.00 N/A N/A N/A 0.277±0.10 0.154±0.09 N/A 0.027±0.01 0.273±0.00 N/A 0.432±0.23 N/A 4.050±0.41
ENSMUSG00000097950 ENSMUST00000182466 0.242±0.08 N/A 0.262±0.08 0.021±0.01 0.084±0.04 0.120±0.05 0.046±0.02 0.031±0.00 N/A 0.178±0.08 N/A 0.084±0.04 0.042±0.00 0.028±0.00

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