C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00086T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1256 VISTA 9606 5:174433171-175034831
GeneTranscriptPositionBiotype
ENSG00000120149 (MSX2)
msh homeobox 2 		ENST00000239243 (MSX2-001) 174724533-174730893 protein_coding
ENST00000507785 (MSX2-002) 174724602-174729880 protein_coding
ENSG00000204754 (FLJ16171)
FLJ16171 protein 		ENST00000377300 (FLJ16171-001) 174919082-174995513 lincRNA
ENSG00000213376 (GAPDHP71)
glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 		ENST00000511530 (GAPDHP71-001) 174513305-174514307 processed_pseudogene
ENSG00000248293 (CTC-281M20.3)
 ENST00000511864 (CTC-281M20.3-001) 174926541-174926717 unprocessed_pseudogene
ENSG00000248929 (HIGD1AP3)
HIG1 hypoxia inducible domain family, member 1A pseudogene 3 		ENST00000515857 (HIGD1AP3-001) 174632932-174633209 processed_pseudogene
ENSG00000249031 (SUMO2P6)
SUMO2 pseudogene 6 		ENST00000505273 (SUMO2P6-001) 174561776-174562063 processed_pseudogene
ENSG00000249306 (LINC01411)
long intergenic non-protein coding RNA 1411 		ENST00000504512 (LINC01411-004) 174503683-174526380 lincRNA
ENST00000506862 (LINC01411-006) 174517759-174532457 lincRNA
ENST00000507361 (LINC01411-001) 174336354-174528715 lincRNA
ENST00000510234 (LINC01411-002) 174336495-174527045 lincRNA
ENST00000511707 (LINC01411-005) 174503815-174520665 lincRNA
ENST00000515513 (LINC01411-003) 174336295-174526454 lincRNA
ENSG00000250256 (RP11-267A15.3)
 ENST00000505567 (RP11-267A15.3-001) 174618164-174625775 lincRNA
ENSG00000251144 (CTD-2532K18.2)
 ENST00000510150 (CTD-2532K18.2-001) 174820027-174826324 lincRNA
ENSG00000251670 (CTD-2532K18.1)
 ENST00000502684 (CTD-2532K18.1-001) 174751304-174850725 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00086T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1256 VISTA 10090 13:53163203-53764849
GeneTranscriptPositionBiotype
ENSMUSG00000021464 (Ror2)
receptor tyrosine kinase-like orphan receptor 2 		ENSMUST00000021918 (Ror2-001) 53109317-53286124 protein_coding
ENSMUST00000130235 (Ror2-002) 53109312-53285549 protein_coding
ENSMUST00000149299 (Ror2-003) 53131960-53275658 processed_transcript
ENSMUSG00000021468 (Sptlc1)
serine palmitoyltransferase, long chain base subunit 1 		ENSMUST00000021920 (Sptlc1-201) 53332716-53377365 protein_coding
ENSMUSG00000021469 (Msx2)
msh homeobox 2 		ENSMUST00000021922 (Msx2-001) 53466884-53473074 protein_coding
ENSMUST00000188606 (Msx2-002) 53471506-53473074 retained_intron
ENSMUSG00000063166 (Gm5449)
predicted pseudogene 5449 		ENSMUST00000081132 (Gm5449-201) 53525703-53526059 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086T_0001ENSG00000120149ENST00000239243ENST00000507785ENSG00000204754ENST00000377300ENSG00000213376ENST00000511530ENSG00000248293ENST00000511864ENSG00000248929ENST00000515857ENSG00000249031ENST00000505273ENSG00000249306ENST00000504512ENST00000506862ENST00000507361ENST00000510234ENST00000511707ENST00000515513ENSG00000250256ENST00000505567ENSG00000251144ENST00000510150ENSG00000251670ENST00000502684CIL_00086T_0002ENSMUSG00000021464ENSMUST00000021918ENSMUST00000130235ENSMUST00000149299ENSMUSG00000021468ENSMUST00000021920ENSMUSG00000021469ENSMUST00000021922ENSMUST00000188606ENSMUSG00000063166ENSMUST00000081132
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086T_0001ENSG00000120149ENST00000239243ENST00000507785ENSG00000204754ENST00000377300ENSG00000213376ENST00000511530ENSG00000248293ENST00000511864ENSG00000248929ENST00000515857ENSG00000249031ENST00000505273ENSG00000249306ENST00000504512ENST00000506862ENST00000507361ENST00000511707ENST00000515513ENSG00000250256ENST00000505567ENSG00000251144ENST00000510150ENSG00000251670ENST00000502684CIL_00086T_0002ENSMUSG00000021464ENSMUST00000021918ENSMUST00000130235ENSMUSG00000021468ENSMUST00000021920ENSMUSG00000021469ENSMUST00000021922ENSMUST00000188606ENSMUSG00000063166ENSMUST00000081132
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120149 ENST00000239243 0.176±0.00 0.208±0.00 N/A 0.179±0.14 0.348±0.04 0.114±0.00 0.138±0.12 0.250±0.00 1.025±1.02 0.025±0.01 0.488±0.00 0.628±0.37 16.194±4.15 1.816±0.42
ENST00000507785 N/A N/A N/A 0.368±0.19 0.648±0.00 0.303±0.06 0.322±0.30 N/A N/A 0.336±0.00 0.371±0.00 0.702±0.00 21.988±6.67 1.163±0.00
ENSG00000204754 ENST00000377300 0.026±0.00 0.056±0.00 N/A 0.092±0.00 0.055±0.00 N/A 0.006±0.00 0.030±0.00 0.041±0.00 N/A N/A 0.040±0.01 N/A 0.079±0.00
ENSG00000213376 ENST00000511530 0.052±0.00 0.037±0.00 N/A 0.099±0.00 0.077±0.00 0.053±0.00 0.072±0.02 0.093±0.00 0.063±0.00 0.017±0.00 0.136±0.00 N/A N/A 0.059±0.01
ENSG00000248293 ENST00000511864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00
ENSG00000248929 ENST00000515857 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249031 ENST00000505273 0.049±0.00 N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A 0.178±0.00 0.045±0.00
ENSG00000249306 ENST00000504512 N/A N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.051±0.02
ENST00000506862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A
ENST00000507361 0.073±0.00 0.311±0.00 N/A 1.093±0.00 0.034±0.01 0.018±0.00 0.035±0.00 0.020±0.00 N/A 0.186±0.00 N/A 0.046±0.00 N/A 0.063±0.03
ENST00000510234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00
ENST00000515513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A
ENSG00000250256 ENST00000505567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.150±0.00
ENSG00000251144 ENST00000510150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00
ENSG00000251670 ENST00000502684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021464 ENSMUST00000021918 6.795±6.25 2.464±0.58 3.152±0.21 1.168±0.01 1.904±0.73 6.245±1.29 0.478±0.10 1.642±0.45 0.096±0.05 1.296±0.53 0.135±0.00 4.413±1.88 1.115±0.34 0.281±0.08
ENSMUST00000130235 0.515±0.02 1.829±0.45 N/A 0.133±0.00 0.985±0.51 2.272±1.18 0.293±0.00 0.605±0.00 0.056±0.04 0.720±0.00 0.085±0.03 1.607±0.54 0.452±0.08 0.820±0.17
ENSMUST00000149299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021468 ENSMUST00000021920 10.800±2.26 22.435±1.74 13.941±1.87 7.652±1.43 11.469±0.85 13.221±1.51 4.256±0.30 13.773±3.20 6.407±1.63 15.461±1.20 3.801±0.61 12.913±2.47 17.759±5.51 5.993±2.57
ENSMUSG00000021469 ENSMUST00000021922 3.883±3.93 0.679±0.27 9.017±1.94 0.378±0.34 7.017±2.88 N/A 0.143±0.03 0.170±0.03 0.034±0.04 N/A 0.043±0.03 1.276±0.69 2.846±1.80 0.330±0.17
ENSMUST00000188606 N/A 0.139±0.00 N/A N/A N/A N/A N/A 0.055±0.00 N/A 0.022±0.00 N/A 0.362±0.00 N/A 0.096±0.03
ENSMUSG00000063166 ENSMUST00000081132 N/A N/A 0.083±0.00 0.060±0.02 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.038±0.01 0.672±0.51

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