C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000870_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm418 VISTA 9606 10:13707726-14312058
GeneTranscriptPositionBiotype
ENSG00000199407 (RNA5SP301)
RNA, 5S ribosomal pseudogene 301 		ENST00000362537 (RNA5SP301-201) 13727796-13727916 rRNA
ENSG00000215227 (NUTF2P5)
nuclear transport factor 2 pseudogene 5 		ENST00000475013 (NUTF2P5-001) 13870797-13871175 processed_pseudogene
ENSG00000225112 (RP11-295P9.6)
 ENST00000412388 (RP11-295P9.6-001) 13710415-13712054 antisense
ENSG00000229751 (RP11-142M10.2)
 ENST00000446193 (RP11-142M10.2-001) 13991815-14007526 antisense
ENSG00000234091 (RP11-353M9.1)
 ENST00000449462 (RP11-353M9.1-001) 13729383-13756200 antisense
CIL_000870_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm418 VISTA 10090 2:3997327-4601456
GeneTranscriptPositionBiotype
ENSMUSG00000026657 (Frmd4a)
FERM domain containing 4A 		ENSMUST00000075767 (Frmd4a-001) 4400975-4614043 protein_coding
ENSMUST00000091497 (Frmd4a-007) 4152872-4613942 protein_coding
ENSMUST00000115037 (Frmd4a-016) 4389614-4529798 protein_coding
ENSMUST00000115039 (Frmd4a-002) 4401471-4537735 retained_intron
ENSMUST00000123919 (Frmd4a-008) 4473194-4498103 retained_intron
ENSMUST00000132710 (Frmd4a-012) 4152863-4171425 processed_transcript
ENSMUST00000137809 (Frmd4a-011) 4017734-4021904 retained_intron
ENSMUST00000138735 (Frmd4a-010) 4017717-4167006 processed_transcript
ENSMUST00000141746 (Frmd4a-003) 4389616-4433512 retained_intron
ENSMUST00000142452 (Frmd4a-005) 4559775-4588179 retained_intron
ENSMUST00000147156 (Frmd4a-004) 4300885-4538897 retained_intron
ENSMUST00000153160 (Frmd4a-006) 4559754-4597989 retained_intron
ENSMUST00000175669 (Frmd4a-009) 4300518-4572439 protein_coding
ENSMUST00000175944 (Frmd4a-014) 4332466-4594640 protein_coding
ENSMUST00000176803 (Frmd4a-018) 4301003-4560260 nonsense_mediated_decay
ENSMUST00000176828 (Frmd4a-015) 4559756-4612584 protein_coding
ENSMUST00000176864 (Frmd4a-019) 4566176-4594676 nonsense_mediated_decay
ENSMUST00000176962 (Frmd4a-017) 4401437-4431364 retained_intron
ENSMUST00000177457 (Frmd4a-013) 4017744-4614041 protein_coding
ENSMUSG00000081889 (Gm13188)
predicted gene 13188 		ENSMUST00000121150 (Gm13188-001) 4081855-4082418 processed_pseudogene
ENSMUSG00000084859 (1700080N15Rik)
RIKEN cDNA 1700080N15 gene 		ENSMUST00000141488 (1700080N15Rik-003) 4132063-4141141 lincRNA
ENSMUST00000154360 (1700080N15Rik-002) 4135479-4141139 lincRNA
ENSMUST00000155091 (1700080N15Rik-001) 4132065-4141141 lincRNA
ENSMUSG00000086458 (Gm2639)
predicted gene 2639 		ENSMUST00000156881 (Gm2639-001) 4051263-4052559 processed_pseudogene
ENSMUSG00000086874 (Gm13175)
predicted gene 13175 		ENSMUST00000139479 (Gm13175-001) 4458434-4466670 antisense
ENSMUSG00000086921 (Gm13189)
predicted gene 13189 		ENSMUST00000138462 (Gm13189-001) 4137774-4144102 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000870_0001ENSG00000199407ENST00000362537ENSG00000215227ENST00000475013ENSG00000225112ENST00000412388ENSG00000229751ENST00000446193ENSG00000234091ENST00000449462CIL_000870_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000870_0001ENSG00000199407ENST00000362537ENSG00000215227ENST00000475013ENSG00000225112ENST00000412388ENSG00000229751ENST00000446193ENSG00000234091ENST00000449462CIL_000870_0002ENSMUSG00000026657ENSMUST00000075767ENSMUST00000091497ENSMUST00000176828ENSMUST00000177457ENSMUSG00000081889ENSMUST00000121150ENSMUSG00000084859ENSMUST00000141488ENSMUST00000154360ENSMUST00000155091ENSMUSG00000086458ENSMUST00000156881ENSMUSG00000086874ENSMUST00000139479ENSMUSG00000086921ENSMUST00000138462
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000199407 ENST00000362537 N/A N/A N/A N/A N/A N/A 8.164±7.96 0.659±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000215227 ENST00000475013 N/A N/A N/A N/A 0.044±0.00 N/A 0.850±0.00 N/A N/A N/A N/A 0.207±0.00 N/A N/A
ENSG00000225112 ENST00000412388 N/A 0.610±0.00 N/A 0.182±0.00 N/A N/A N/A N/A N/A 0.124±0.01 N/A N/A N/A 0.249±0.00
ENSG00000229751 ENST00000446193 0.038±0.00 0.019±0.00 N/A 0.074±0.02 N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.070±0.00 0.075±0.00 N/A
ENSG00000234091 ENST00000449462 N/A 0.078±0.00 N/A 0.129±0.00 0.039±0.00 N/A N/A 0.452±0.27 1.062±0.00 N/A 0.188±0.00 N/A N/A 0.182±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026657 ENSMUST00000075767 N/A 0.714±0.00 0.836±0.00 14.837±1.79 N/A N/A 1.574±0.06 N/A 2.234±0.00 N/A 0.083±0.00 N/A 1.440±0.00 0.570±0.15
ENSMUST00000091497 2.285±0.36 0.527±0.00 2.287±0.53 7.167±0.87 1.063±0.21 0.711±0.09 1.108±0.00 0.784±0.12 2.741±2.57 5.316±1.03 0.192±0.06 1.482±0.05 6.482±0.16 0.902±0.00
ENSMUST00000115037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176828 3.620±0.76 4.019±1.13 0.971±0.26 8.308±0.00 6.260±2.99 3.951±1.33 2.086±0.48 1.748±0.92 2.506±2.30 16.024±3.66 0.388±0.00 7.656±2.59 3.603±0.98 1.241±0.48
ENSMUST00000176864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177457 N/A N/A N/A 18.594±0.00 N/A N/A 1.068±0.00 N/A 1.443±0.00 N/A 0.308±0.00 N/A N/A N/A
ENSMUSG00000081889 ENSMUST00000121150 N/A 0.104±0.01 N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00
ENSMUSG00000084859 ENSMUST00000141488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.981±2.52
ENSMUST00000154360 N/A N/A 0.006±0.00 N/A N/A 0.137±0.05 N/A 0.065±0.00 N/A 0.068±0.00 N/A N/A N/A 0.640±0.00
ENSMUST00000155091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.135±3.73
ENSMUSG00000086458 ENSMUST00000156881 0.022±0.00 N/A 0.006±0.00 0.058±0.02 N/A N/A 0.029±0.02 N/A 0.004±0.00 0.024±0.00 N/A N/A N/A 0.173±0.04
ENSMUSG00000086874 ENSMUST00000139479 0.244±0.10 N/A N/A 0.115±0.00 N/A 0.226±0.00 0.095±0.00 N/A N/A 0.172±0.00 N/A N/A 0.047±0.00 1.053±0.54
ENSMUSG00000086921 ENSMUST00000138462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.470±0.00

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