C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00089Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2357 VISTA 9606 1:213807252-214408737
GeneTranscriptPositionBiotype
ENSG00000143499 (SMYD2)
SET and MYND domain containing 2 		ENST00000366957 (SMYD2-001) 214281233-214337131 protein_coding
ENST00000415093 (SMYD2-201) 214281233-214336834 protein_coding
ENST00000416415 (SMYD2-006) 214330977-214337131 protein_coding
ENST00000460580 (SMYD2-002) 214281222-214337131 processed_transcript
ENST00000471645 (SMYD2-004) 214281125-214337130 retained_intron
ENST00000484459 (SMYD2-005) 214327494-214331070 processed_transcript
ENST00000491455 (SMYD2-003) 214281102-214337131 processed_transcript
ENSG00000152104 (PTPN14)
protein tyrosine phosphatase, non-receptor type 14 		ENST00000366956 (PTPN14-001) 214348696-214551223 protein_coding
ENST00000473261 (PTPN14-004) 214372246-214376406 processed_transcript
ENST00000486173 (PTPN14-003) 214464702-214552449 processed_transcript
ENST00000491277 (PTPN14-002) 214528276-214551602 processed_transcript
ENST00000543945 (PTPN14-201) 214357751-214551223 protein_coding
ENSG00000272167 (PROX1-AS1)
 ENST00000607258 (PROX1-AS1-001) 214028891-214030901 antisense
ENSG00000274895 (RP11-478J18.2)
 ENST00000610409 (RP11-478J18.2-001) 213983793-213986419 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00089Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2357 VISTA 10090 1:189761322-190362331
GeneTranscriptPositionBiotype
ENSMUSG00000010175 (Prox1)
prospero homeobox 1 		ENSMUST00000010319 (Prox1-003) 190122453-190169399 protein_coding
ENSMUST00000175916 (Prox1-001) 190118035-190170714 protein_coding
ENSMUST00000177288 (Prox1-002) 190121775-190170233 protein_coding
ENSMUSG00000026603 (Smyd2)
SET and MYND domain containing 2 		ENSMUST00000027897 (Smyd2-001) 189880492-189922363 protein_coding
ENSMUST00000130804 (Smyd2-003) 189880494-189889002 processed_transcript
ENSMUST00000132289 (Smyd2-004) 189880642-189882372 retained_intron
ENSMUST00000144452 (Smyd2-002) 189885046-189922253 retained_intron
ENSMUSG00000026604 (Ptpn14)
protein tyrosine phosphatase, non-receptor type 14 		ENSMUST00000027898 (Ptpn14-001) 189786633-189876695 protein_coding
ENSMUST00000097442 (Ptpn14-201) 189728268-189876689 protein_coding
ENSMUST00000128275 (Ptpn14-002) 189786636-189851976 retained_intron
ENSMUST00000148129 (Ptpn14-003) 189862659-189863433 processed_transcript
ENSMUSG00000079045 (Prox1os)
prospero homeobox 1, opposite strand 		ENSMUST00000110279 (Prox1os-001) 190170296-190217276 antisense
ENSMUSG00000099404 (RP23-190F21.1)
predicted gene 28172 		ENSMUST00000189880 (RP23-190F21.1-001) 190168670-190169633 antisense
ENSMUSG00000101293 (RP23-190F21.2)
 ENSMUST00000186611 (RP23-190F21.2-001) 190163690-190164612 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089Q_0001ENSG00000143499ENST00000366957ENST00000415093ENST00000416415ENST00000460580ENST00000471645ENST00000484459ENST00000491455ENSG00000152104ENST00000366956ENST00000473261ENST00000486173ENST00000491277ENST00000543945ENSG00000272167ENST00000607258ENSG00000274895ENST00000610409CIL_00089Q_0002ENSMUSG00000010175ENSMUST00000010319ENSMUST00000175916ENSMUST00000177288ENSMUSG00000026603ENSMUST00000027897ENSMUST00000130804ENSMUST00000132289ENSMUST00000144452ENSMUSG00000026604ENSMUST00000027898ENSMUST00000097442ENSMUST00000128275ENSMUST00000148129ENSMUSG00000079045ENSMUST00000110279ENSMUSG00000099404ENSMUST00000189880ENSMUSG00000101293ENSMUST00000186611
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089Q_0001ENSG00000143499ENST00000366957ENST00000415093ENST00000460580ENST00000471645ENST00000484459ENST00000491455ENSG00000152104ENST00000366956ENST00000543945ENSG00000272167ENST00000607258ENSG00000274895ENST00000610409CIL_00089Q_0002ENSMUSG00000010175ENSMUST00000010319ENSMUST00000175916ENSMUST00000177288ENSMUSG00000026603ENSMUST00000027897ENSMUST00000130804ENSMUST00000132289ENSMUSG00000026604ENSMUST00000027898ENSMUST00000097442ENSMUST00000128275ENSMUSG00000079045ENSMUST00000110279ENSMUSG00000099404ENSMUST00000189880ENSMUSG00000101293ENSMUST00000186611
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143499 ENST00000366957 5.687±0.00 7.427±0.00 N/A 9.197±2.37 4.071±2.17 3.486±1.91 38.172±23.62 2.565±0.96 3.863±0.00 4.991±0.00 5.508±1.24 5.301±2.51 19.018±4.36 6.973±2.44
ENST00000415093 N/A N/A N/A N/A N/A N/A N/A 2.633±0.00 1.413±0.00 3.397±0.00 4.397±0.00 11.139±0.00 31.414±0.00 18.394±10.51
ENST00000416415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460580 4.258±0.00 8.169±0.00 N/A 9.699±6.09 10.092±0.00 N/A 45.490±0.00 7.093±0.00 2.443±0.00 3.486±1.19 10.693±0.00 3.886±1.93 N/A 12.302±0.00
ENST00000471645 N/A N/A 0.774±0.00 N/A 1.283±0.00 0.330±0.00 2.559±0.00 0.615±0.05 0.370±0.00 N/A N/A 0.716±0.38 N/A N/A
ENST00000484459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.839±0.00 N/A N/A N/A
ENST00000491455 N/A N/A N/A N/A N/A 1.302±0.00 N/A 0.380±0.00 N/A N/A 0.883±0.00 N/A N/A N/A
ENSG00000152104 ENST00000366956 10.109±0.00 0.898±0.00 3.236±0.00 1.072±0.40 4.311±2.82 3.435±1.88 1.477±0.62 3.053±2.81 2.724±2.47 1.200±0.69 6.309±2.71 2.417±1.38 2.650±2.14 3.587±0.76
ENST00000473261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543945 N/A N/A N/A N/A N/A N/A 0.561±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000272167 ENST00000607258 N/A 0.242±0.00 0.057±0.00 0.087±0.03 0.328±0.00 0.063±0.00 0.026±0.01 0.537±0.00 0.107±0.08 N/A 0.149±0.00 0.319±0.29 N/A 0.011±0.00
ENSG00000274895 ENST00000610409 0.028±0.00 0.274±0.00 0.049±0.00 N/A 0.307±0.00 N/A N/A 0.925±0.00 0.456±0.00 N/A 0.052±0.00 0.395±0.35 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010175 ENSMUST00000010319 N/A N/A N/A 1.983±0.00 0.237±0.00 0.207±0.00 1.424±0.00 0.632±0.22 N/A N/A N/A 0.369±0.00 0.086±0.00 2.108±0.68
ENSMUST00000175916 0.577±0.49 11.261±0.81 0.321±0.02 3.310±2.20 1.194±0.40 0.756±0.12 3.641±1.52 1.328±0.30 7.593±4.25 0.567±0.08 0.451±0.07 1.170±0.64 0.144±0.10 0.394±0.00
ENSMUST00000177288 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A
ENSMUSG00000026603 ENSMUST00000027897 20.877±4.70 26.029±1.43 24.740±4.94 30.439±20.19 20.456±6.30 11.780±2.66 31.004±5.69 11.549±0.69 11.282±3.50 7.629±0.72 121.196±7.86 32.947±8.51 35.454±16.14 6.995±1.11
ENSMUST00000130804 10.015±1.36 N/A 7.287±0.00 8.467±0.00 10.662±3.18 5.694±0.00 14.875±5.20 6.087±0.35 4.722±1.83 2.163±0.24 N/A 17.527±4.67 14.560±2.01 N/A
ENSMUST00000132289 N/A N/A N/A 45.438±0.00 N/A N/A N/A N/A N/A N/A N/A 40.760±0.00 59.537±13.00 11.211±0.00
ENSMUST00000144452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026604 ENSMUST00000027898 0.856±0.00 N/A 2.713±0.00 0.746±0.02 N/A 0.457±0.00 1.356±0.39 N/A 0.151±0.10 N/A 0.746±0.44 6.186±0.83 1.220±0.41 0.282±0.01
ENSMUST00000097442 6.851±1.81 3.118±0.92 2.526±0.36 0.536±0.12 5.767±0.79 2.325±0.46 3.240±0.74 3.230±0.91 0.152±0.05 9.288±1.01 2.061±0.53 6.865±2.21 2.341±1.32 0.149±0.04
ENSMUST00000128275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.506±2.05 1.395±0.88
ENSMUST00000148129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079045 ENSMUST00000110279 N/A N/A N/A N/A N/A N/A N/A N/A 18.729±1.40 N/A N/A N/A N/A 2.419±0.00
ENSMUSG00000099404 ENSMUST00000189880 N/A 1.017±0.32 N/A 0.129±0.03 0.098±0.01 0.192±0.00 0.277±0.11 0.230±0.08 0.474±0.31 N/A N/A 0.280±0.01 N/A N/A
ENSMUSG00000101293 ENSMUST00000186611 N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A

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