Notice (8): Undefined index: CIL_0008CT_0002 [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0008CT_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000196628' => 'transcription factor 4',
		'ENSG00000252437' => 'RNA, 5S ribosomal pseudogene 459',
		'ENSG00000264571' => 'microRNA 4529',
		'ENSG00000267013' => null,
		'ENSG00000267028' => null,
		'ENSG00000267402' => null,
		'ENSMUSG00000053477' => 'transcription factor 4',
		'ENSMUSG00000064706' => 'predicted gene, 22508',
		'ENSMUSG00000088659' => 'predicted gene, 24845'
	),
	'gene_name_arr' => array(
		'ENSG00000196628' => 'TCF4',
		'ENSG00000252437' => 'RNA5SP459',
		'ENSG00000264571' => 'MIR4529',
		'ENSG00000267013' => 'CTD-2171N6.1',
		'ENSG00000267028' => 'RP11-619L19.1',
		'ENSG00000267402' => 'RP11-619L19.2',
		'ENSMUSG00000053477' => 'Tcf4',
		'ENSMUSG00000064706' => 'Gm22508',
		'ENSMUSG00000088659' => 'Gm24845'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 7 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 18 => 'Brain',
		(int) 24 => 'Breast',
		(int) 30 => 'Colon',
		(int) 36 => 'Heart',
		(int) 41 => 'Kidney',
		(int) 46 => 'Liver',
		(int) 52 => 'Lung',
		(int) 60 => 'Muscle',
		(int) 65 => 'Ovary',
		(int) 76 => 'Placenta',
		(int) 82 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 71,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000354452' => array(
			'start' => '55222331',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-201'
		),
		'ENST00000356073' => array(
			'start' => '55222334',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-002'
		),
		'ENST00000398339' => array(
			'start' => '55227936',
			'end' => '55635954',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-004'
		),
		'ENST00000457482' => array(
			'start' => '55227689',
			'end' => '55322294',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-015'
		),
		'ENST00000537578' => array(
			'start' => '55227752',
			'end' => '55589814',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-003'
		),
		'ENST00000537856' => array(
			'start' => '55227849',
			'end' => '55401690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-013'
		),
		'ENST00000540999' => array(
			'start' => '55227690',
			'end' => '55586105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-007'
		),
		'ENST00000543082' => array(
			'start' => '55227689',
			'end' => '55510769',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-009'
		),
		'ENST00000544241' => array(
			'start' => '55227855',
			'end' => '55403995',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-011'
		),
		'ENST00000561831' => array(
			'start' => '55227878',
			'end' => '55302626',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-016'
		),
		'ENST00000561992' => array(
			'start' => '55227864',
			'end' => '55422492',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-010'
		),
		'ENST00000562030' => array(
			'start' => '55350359',
			'end' => '55401335',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-014'
		),
		'ENST00000562543' => array(
			'start' => '55350955',
			'end' => '55591170',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-040'
		),
		'ENST00000562607' => array(
			'start' => '55275648',
			'end' => '55351997',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-035'
		),
		'ENST00000562638' => array(
			'start' => '55275662',
			'end' => '55401712',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-043'
		),
		'ENST00000562680' => array(
			'start' => '55227849',
			'end' => '55401668',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TCF4-018'
		),
		'ENST00000562847' => array(
			'start' => '55350967',
			'end' => '55585966',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-029'
		),
		'ENST00000563686' => array(
			'start' => '55264596',
			'end' => '55464144',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TCF4-017'
		),
		'ENST00000563760' => array(
			'start' => '55254504',
			'end' => '55321805',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-037'
		),
		'ENST00000563824' => array(
			'start' => '55350364',
			'end' => '55585437',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-028'
		),
		'ENST00000563888' => array(
			'start' => '55350402',
			'end' => '55586119',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-025'
		),
		'ENST00000564228' => array(
			'start' => '55227911',
			'end' => '55403714',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-042'
		),
		'ENST00000564343' => array(
			'start' => '55350896',
			'end' => '55591279',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-023'
		),
		'ENST00000564403' => array(
			'start' => '55227936',
			'end' => '55589803',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-019'
		),
		'ENST00000564999' => array(
			'start' => '55227820',
			'end' => '55588610',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-006'
		),
		'ENST00000565018' => array(
			'start' => '55227884',
			'end' => '55589520',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-001'
		),
		'ENST00000565124' => array(
			'start' => '55585280',
			'end' => '55635948',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-020'
		),
		'ENST00000565393' => array(
			'start' => '55585317',
			'end' => '55631362',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-039'
		),
		'ENST00000565580' => array(
			'start' => '55403454',
			'end' => '55546934',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-030'
		),
		'ENST00000565908' => array(
			'start' => '55275707',
			'end' => '55588160',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-024'
		),
		'ENST00000566279' => array(
			'start' => '55227911',
			'end' => '55588617',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-045'
		),
		'ENST00000566286' => array(
			'start' => '55227911',
			'end' => '55588535',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-041'
		),
		'ENST00000566376' => array(
			'start' => '55332067',
			'end' => '55403506',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-036'
		),
		'ENST00000566514' => array(
			'start' => '55269884',
			'end' => '55585769',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-027'
		),
		'ENST00000566777' => array(
			'start' => '55275680',
			'end' => '55422355',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-032'
		),
		'ENST00000567880' => array(
			'start' => '55227911',
			'end' => '55587116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-046'
		),
		'ENST00000568147' => array(
			'start' => '55350376',
			'end' => '55585968',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-026'
		),
		'ENST00000568169' => array(
			'start' => '55269924',
			'end' => '55664787',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-021'
		),
		'ENST00000568186' => array(
			'start' => '55275660',
			'end' => '55403706',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-033'
		),
		'ENST00000568673' => array(
			'start' => '55227674',
			'end' => '55585908',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-008'
		),
		'ENST00000568740' => array(
			'start' => '55227846',
			'end' => '55589798',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-005'
		),
		'ENST00000569012' => array(
			'start' => '55269875',
			'end' => '55401551',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-034'
		),
		'ENST00000569357' => array(
			'start' => '55403454',
			'end' => '55635892',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-022'
		),
		'ENST00000570146' => array(
			'start' => '55259621',
			'end' => '55275671',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-038'
		),
		'ENST00000570177' => array(
			'start' => '55227984',
			'end' => '55402240',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-012'
		),
		'ENST00000570287' => array(
			'start' => '55227911',
			'end' => '55321986',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-044'
		),
		'ENST00000590810' => array(
			'start' => '55350357',
			'end' => '55401851',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-047'
		),
		'ENST00000616053' => array(
			'start' => '55222331',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-202'
		),
		'ENST00000516628' => array(
			'start' => '55146546',
			'end' => '55146645',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP459-201'
		),
		'ENST00000578110' => array(
			'start' => '55479221',
			'end' => '55479298',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4529-201'
		),
		'ENST00000589125' => array(
			'start' => '55105904',
			'end' => '55124306',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTD-2171N6.1-001'
		),
		'ENST00000592405' => array(
			'start' => '55108311',
			'end' => '55119598',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTD-2171N6.1-002'
		),
		'ENST00000587660' => array(
			'start' => '55452533',
			'end' => '55482940',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-619L19.1-001'
		),
		'ENST00000586467' => array(
			'start' => '55492175',
			'end' => '55496392',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-619L19.2-001'
		),
		'ENSMUST00000066717' => array(
			'start' => '69344146',
			'end' => '69684343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-003'
		),
		'ENSMUST00000078486' => array(
			'start' => '69345721',
			'end' => '69687967',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-201'
		),
		'ENSMUST00000114977' => array(
			'start' => '69593426',
			'end' => '69684526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-008'
		),
		'ENSMUST00000114978' => array(
			'start' => '69593417',
			'end' => '69683252',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-007'
		),
		'ENSMUST00000114980' => array(
			'start' => '69346203',
			'end' => '69683248',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-004'
		),
		'ENSMUST00000114982' => array(
			'start' => '69345771',
			'end' => '69684526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-002'
		),
		'ENSMUST00000114985' => array(
			'start' => '69344510',
			'end' => '69687925',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-001'
		),
		'ENSMUST00000125154' => array(
			'start' => '69521538',
			'end' => '69564687',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-009'
		),
		'ENSMUST00000126946' => array(
			'start' => '69521793',
			'end' => '69633654',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-010'
		),
		'ENSMUST00000128706' => array(
			'start' => '69344492',
			'end' => '69565506',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-005'
		),
		'ENSMUST00000136019' => array(
			'start' => '69682380',
			'end' => '69683573',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-013'
		),
		'ENSMUST00000136151' => array(
			'start' => '69563335',
			'end' => '69636964',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-011'
		),
		'ENSMUST00000145918' => array(
			'start' => '69599536',
			'end' => '69651289',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-014'
		),
		'ENSMUST00000146908' => array(
			'start' => '69679699',
			'end' => '69684528',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-012'
		),
		'ENSMUST00000155695' => array(
			'start' => '69345771',
			'end' => '69487850',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-006'
		),
		'ENSMUST00000082772' => array(
			'start' => '69777936',
			'end' => '69778045',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Gm22508-201'
		),
		'ENSMUST00000158034' => array(
			'start' => '69551963',
			'end' => '69552071',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'Gm24845-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0008CT_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0008CT_0001' => array(
		'genes_in_region' => array(
			'ENSG00000196628' => array(
				[maximum depth reached]
			),
			'ENSG00000267013' => array(
				[maximum depth reached]
			),
			'ENSG00000267028' => array(
				[maximum depth reached]
			),
			'ENSG00000267402' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Colon',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Heart',
			(int) 11 => 'Kidney',
			(int) 12 => 'Lung',
			(int) 13 => 'Ovary',
			(int) 14 => 'Bladder',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Bladder',
			(int) 22 => 'Muscle',
			(int) 23 => 'Lung',
			(int) 24 => 'Adipose',
			(int) 25 => 'Brain',
			(int) 26 => 'Heart',
			(int) 27 => 'Ovary',
			(int) 28 => 'Placenta',
			(int) 29 => 'Testis',
			(int) 30 => 'Adipose',
			(int) 31 => 'Lung',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Breast',
			(int) 36 => 'Lung',
			(int) 37 => 'Adipose',
			(int) 38 => 'Bladder',
			(int) 39 => 'Breast',
			(int) 40 => 'Ovary',
			(int) 41 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000196628' => 'transcription factor 4',
	'ENSG00000252437' => 'RNA, 5S ribosomal pseudogene 459',
	'ENSG00000264571' => 'microRNA 4529',
	'ENSG00000267013' => null,
	'ENSG00000267028' => null,
	'ENSG00000267402' => null,
	'ENSMUSG00000053477' => 'transcription factor 4',
	'ENSMUSG00000064706' => 'predicted gene, 22508',
	'ENSMUSG00000088659' => 'predicted gene, 24845'
)
$gene_name_arr = array(
	'ENSG00000196628' => 'TCF4',
	'ENSG00000252437' => 'RNA5SP459',
	'ENSG00000264571' => 'MIR4529',
	'ENSG00000267013' => 'CTD-2171N6.1',
	'ENSG00000267028' => 'RP11-619L19.1',
	'ENSG00000267402' => 'RP11-619L19.2',
	'ENSMUSG00000053477' => 'Tcf4',
	'ENSMUSG00000064706' => 'Gm22508',
	'ENSMUSG00000088659' => 'Gm24845'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008CT_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '55004656',
			'seq_end' => '55608642',
			'region_length' => '603986',
			'region_type' => 'VISTA',
			'el_id' => 'hs1561'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008CT_0002',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '69306431',
			'seq_end' => '69910049',
			'region_length' => '603618',
			'region_type' => 'VISTA',
			'el_id' => 'hs1561'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 7 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 18 => 'Brain',
	(int) 24 => 'Breast',
	(int) 30 => 'Colon',
	(int) 36 => 'Heart',
	(int) 41 => 'Kidney',
	(int) 46 => 'Liver',
	(int) 52 => 'Lung',
	(int) 60 => 'Muscle',
	(int) 65 => 'Ovary',
	(int) 76 => 'Placenta',
	(int) 82 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 71
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000354452' => array(
		'start' => '55222331',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-201'
	),
	'ENST00000356073' => array(
		'start' => '55222334',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-002'
	),
	'ENST00000398339' => array(
		'start' => '55227936',
		'end' => '55635954',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-004'
	),
	'ENST00000457482' => array(
		'start' => '55227689',
		'end' => '55322294',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-015'
	),
	'ENST00000537578' => array(
		'start' => '55227752',
		'end' => '55589814',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-003'
	),
	'ENST00000537856' => array(
		'start' => '55227849',
		'end' => '55401690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-013'
	),
	'ENST00000540999' => array(
		'start' => '55227690',
		'end' => '55586105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-007'
	),
	'ENST00000543082' => array(
		'start' => '55227689',
		'end' => '55510769',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-009'
	),
	'ENST00000544241' => array(
		'start' => '55227855',
		'end' => '55403995',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-011'
	),
	'ENST00000561831' => array(
		'start' => '55227878',
		'end' => '55302626',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-016'
	),
	'ENST00000561992' => array(
		'start' => '55227864',
		'end' => '55422492',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-010'
	),
	'ENST00000562030' => array(
		'start' => '55350359',
		'end' => '55401335',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-014'
	),
	'ENST00000562543' => array(
		'start' => '55350955',
		'end' => '55591170',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-040'
	),
	'ENST00000562607' => array(
		'start' => '55275648',
		'end' => '55351997',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-035'
	),
	'ENST00000562638' => array(
		'start' => '55275662',
		'end' => '55401712',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-043'
	),
	'ENST00000562680' => array(
		'start' => '55227849',
		'end' => '55401668',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TCF4-018'
	),
	'ENST00000562847' => array(
		'start' => '55350967',
		'end' => '55585966',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-029'
	),
	'ENST00000563686' => array(
		'start' => '55264596',
		'end' => '55464144',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TCF4-017'
	),
	'ENST00000563760' => array(
		'start' => '55254504',
		'end' => '55321805',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-037'
	),
	'ENST00000563824' => array(
		'start' => '55350364',
		'end' => '55585437',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-028'
	),
	'ENST00000563888' => array(
		'start' => '55350402',
		'end' => '55586119',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-025'
	),
	'ENST00000564228' => array(
		'start' => '55227911',
		'end' => '55403714',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-042'
	),
	'ENST00000564343' => array(
		'start' => '55350896',
		'end' => '55591279',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-023'
	),
	'ENST00000564403' => array(
		'start' => '55227936',
		'end' => '55589803',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-019'
	),
	'ENST00000564999' => array(
		'start' => '55227820',
		'end' => '55588610',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-006'
	),
	'ENST00000565018' => array(
		'start' => '55227884',
		'end' => '55589520',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-001'
	),
	'ENST00000565124' => array(
		'start' => '55585280',
		'end' => '55635948',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-020'
	),
	'ENST00000565393' => array(
		'start' => '55585317',
		'end' => '55631362',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-039'
	),
	'ENST00000565580' => array(
		'start' => '55403454',
		'end' => '55546934',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-030'
	),
	'ENST00000565908' => array(
		'start' => '55275707',
		'end' => '55588160',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-024'
	),
	'ENST00000566279' => array(
		'start' => '55227911',
		'end' => '55588617',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-045'
	),
	'ENST00000566286' => array(
		'start' => '55227911',
		'end' => '55588535',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-041'
	),
	'ENST00000566376' => array(
		'start' => '55332067',
		'end' => '55403506',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-036'
	),
	'ENST00000566514' => array(
		'start' => '55269884',
		'end' => '55585769',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-027'
	),
	'ENST00000566777' => array(
		'start' => '55275680',
		'end' => '55422355',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-032'
	),
	'ENST00000567880' => array(
		'start' => '55227911',
		'end' => '55587116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-046'
	),
	'ENST00000568147' => array(
		'start' => '55350376',
		'end' => '55585968',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-026'
	),
	'ENST00000568169' => array(
		'start' => '55269924',
		'end' => '55664787',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-021'
	),
	'ENST00000568186' => array(
		'start' => '55275660',
		'end' => '55403706',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-033'
	),
	'ENST00000568673' => array(
		'start' => '55227674',
		'end' => '55585908',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-008'
	),
	'ENST00000568740' => array(
		'start' => '55227846',
		'end' => '55589798',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-005'
	),
	'ENST00000569012' => array(
		'start' => '55269875',
		'end' => '55401551',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-034'
	),
	'ENST00000569357' => array(
		'start' => '55403454',
		'end' => '55635892',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-022'
	),
	'ENST00000570146' => array(
		'start' => '55259621',
		'end' => '55275671',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-038'
	),
	'ENST00000570177' => array(
		'start' => '55227984',
		'end' => '55402240',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-012'
	),
	'ENST00000570287' => array(
		'start' => '55227911',
		'end' => '55321986',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-044'
	),
	'ENST00000590810' => array(
		'start' => '55350357',
		'end' => '55401851',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-047'
	),
	'ENST00000616053' => array(
		'start' => '55222331',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-202'
	),
	'ENST00000516628' => array(
		'start' => '55146546',
		'end' => '55146645',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP459-201'
	),
	'ENST00000578110' => array(
		'start' => '55479221',
		'end' => '55479298',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4529-201'
	),
	'ENST00000589125' => array(
		'start' => '55105904',
		'end' => '55124306',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTD-2171N6.1-001'
	),
	'ENST00000592405' => array(
		'start' => '55108311',
		'end' => '55119598',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTD-2171N6.1-002'
	),
	'ENST00000587660' => array(
		'start' => '55452533',
		'end' => '55482940',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-619L19.1-001'
	),
	'ENST00000586467' => array(
		'start' => '55492175',
		'end' => '55496392',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-619L19.2-001'
	),
	'ENSMUST00000066717' => array(
		'start' => '69344146',
		'end' => '69684343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-003'
	),
	'ENSMUST00000078486' => array(
		'start' => '69345721',
		'end' => '69687967',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-201'
	),
	'ENSMUST00000114977' => array(
		'start' => '69593426',
		'end' => '69684526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-008'
	),
	'ENSMUST00000114978' => array(
		'start' => '69593417',
		'end' => '69683252',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-007'
	),
	'ENSMUST00000114980' => array(
		'start' => '69346203',
		'end' => '69683248',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-004'
	),
	'ENSMUST00000114982' => array(
		'start' => '69345771',
		'end' => '69684526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-002'
	),
	'ENSMUST00000114985' => array(
		'start' => '69344510',
		'end' => '69687925',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-001'
	),
	'ENSMUST00000125154' => array(
		'start' => '69521538',
		'end' => '69564687',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-009'
	),
	'ENSMUST00000126946' => array(
		'start' => '69521793',
		'end' => '69633654',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-010'
	),
	'ENSMUST00000128706' => array(
		'start' => '69344492',
		'end' => '69565506',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-005'
	),
	'ENSMUST00000136019' => array(
		'start' => '69682380',
		'end' => '69683573',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-013'
	),
	'ENSMUST00000136151' => array(
		'start' => '69563335',
		'end' => '69636964',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-011'
	),
	'ENSMUST00000145918' => array(
		'start' => '69599536',
		'end' => '69651289',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-014'
	),
	'ENSMUST00000146908' => array(
		'start' => '69679699',
		'end' => '69684528',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-012'
	),
	'ENSMUST00000155695' => array(
		'start' => '69345771',
		'end' => '69487850',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-006'
	),
	'ENSMUST00000082772' => array(
		'start' => '69777936',
		'end' => '69778045',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Gm22508-201'
	),
	'ENSMUST00000158034' => array(
		'start' => '69551963',
		'end' => '69552071',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'Gm24845-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0008CT_0001' => array(
		'genes_in_region' => array(
			'ENSG00000196628' => array(
				[maximum depth reached]
			),
			'ENSG00000267013' => array(
				[maximum depth reached]
			),
			'ENSG00000267028' => array(
				[maximum depth reached]
			),
			'ENSG00000267402' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Colon',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Heart',
			(int) 11 => 'Kidney',
			(int) 12 => 'Lung',
			(int) 13 => 'Ovary',
			(int) 14 => 'Bladder',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Bladder',
			(int) 22 => 'Muscle',
			(int) 23 => 'Lung',
			(int) 24 => 'Adipose',
			(int) 25 => 'Brain',
			(int) 26 => 'Heart',
			(int) 27 => 'Ovary',
			(int) 28 => 'Placenta',
			(int) 29 => 'Testis',
			(int) 30 => 'Adipose',
			(int) 31 => 'Lung',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Breast',
			(int) 36 => 'Lung',
			(int) 37 => 'Adipose',
			(int) 38 => 'Bladder',
			(int) 39 => 'Breast',
			(int) 40 => 'Ovary',
			(int) 41 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0008CT_0002',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '69306431',
		'seq_end' => '69910049',
		'region_length' => '603618',
		'region_type' => 'VISTA',
		'el_id' => 'hs1561'
	)
)
$gene_el = array(
	'ENST00000586467' => array(
		'Adipose' => array(
			'average_FPKM' => '0.101',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.503',
			'stddev_FPKM' => '0.00'
		),
		'Breast' => array(
			'average_FPKM' => '0.113',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.406',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.069',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000267402'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.101',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.503',
		'stddev_FPKM' => '0.00'
	),
	'Breast' => array(
		'average_FPKM' => '0.113',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.406',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.069',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000586467'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0008CT_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000196628' => 'transcription factor 4',
		'ENSG00000252437' => 'RNA, 5S ribosomal pseudogene 459',
		'ENSG00000264571' => 'microRNA 4529',
		'ENSG00000267013' => null,
		'ENSG00000267028' => null,
		'ENSG00000267402' => null,
		'ENSMUSG00000053477' => 'transcription factor 4',
		'ENSMUSG00000064706' => 'predicted gene, 22508',
		'ENSMUSG00000088659' => 'predicted gene, 24845'
	),
	'gene_name_arr' => array(
		'ENSG00000196628' => 'TCF4',
		'ENSG00000252437' => 'RNA5SP459',
		'ENSG00000264571' => 'MIR4529',
		'ENSG00000267013' => 'CTD-2171N6.1',
		'ENSG00000267028' => 'RP11-619L19.1',
		'ENSG00000267402' => 'RP11-619L19.2',
		'ENSMUSG00000053477' => 'Tcf4',
		'ENSMUSG00000064706' => 'Gm22508',
		'ENSMUSG00000088659' => 'Gm24845'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 7 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 18 => 'Brain',
		(int) 24 => 'Breast',
		(int) 30 => 'Colon',
		(int) 36 => 'Heart',
		(int) 41 => 'Kidney',
		(int) 46 => 'Liver',
		(int) 52 => 'Lung',
		(int) 60 => 'Muscle',
		(int) 65 => 'Ovary',
		(int) 76 => 'Placenta',
		(int) 82 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 71,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000354452' => array(
			'start' => '55222331',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-201'
		),
		'ENST00000356073' => array(
			'start' => '55222334',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-002'
		),
		'ENST00000398339' => array(
			'start' => '55227936',
			'end' => '55635954',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-004'
		),
		'ENST00000457482' => array(
			'start' => '55227689',
			'end' => '55322294',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-015'
		),
		'ENST00000537578' => array(
			'start' => '55227752',
			'end' => '55589814',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-003'
		),
		'ENST00000537856' => array(
			'start' => '55227849',
			'end' => '55401690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-013'
		),
		'ENST00000540999' => array(
			'start' => '55227690',
			'end' => '55586105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-007'
		),
		'ENST00000543082' => array(
			'start' => '55227689',
			'end' => '55510769',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-009'
		),
		'ENST00000544241' => array(
			'start' => '55227855',
			'end' => '55403995',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-011'
		),
		'ENST00000561831' => array(
			'start' => '55227878',
			'end' => '55302626',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-016'
		),
		'ENST00000561992' => array(
			'start' => '55227864',
			'end' => '55422492',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-010'
		),
		'ENST00000562030' => array(
			'start' => '55350359',
			'end' => '55401335',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-014'
		),
		'ENST00000562543' => array(
			'start' => '55350955',
			'end' => '55591170',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-040'
		),
		'ENST00000562607' => array(
			'start' => '55275648',
			'end' => '55351997',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-035'
		),
		'ENST00000562638' => array(
			'start' => '55275662',
			'end' => '55401712',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-043'
		),
		'ENST00000562680' => array(
			'start' => '55227849',
			'end' => '55401668',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TCF4-018'
		),
		'ENST00000562847' => array(
			'start' => '55350967',
			'end' => '55585966',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-029'
		),
		'ENST00000563686' => array(
			'start' => '55264596',
			'end' => '55464144',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TCF4-017'
		),
		'ENST00000563760' => array(
			'start' => '55254504',
			'end' => '55321805',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-037'
		),
		'ENST00000563824' => array(
			'start' => '55350364',
			'end' => '55585437',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-028'
		),
		'ENST00000563888' => array(
			'start' => '55350402',
			'end' => '55586119',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-025'
		),
		'ENST00000564228' => array(
			'start' => '55227911',
			'end' => '55403714',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-042'
		),
		'ENST00000564343' => array(
			'start' => '55350896',
			'end' => '55591279',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-023'
		),
		'ENST00000564403' => array(
			'start' => '55227936',
			'end' => '55589803',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-019'
		),
		'ENST00000564999' => array(
			'start' => '55227820',
			'end' => '55588610',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-006'
		),
		'ENST00000565018' => array(
			'start' => '55227884',
			'end' => '55589520',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-001'
		),
		'ENST00000565124' => array(
			'start' => '55585280',
			'end' => '55635948',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-020'
		),
		'ENST00000565393' => array(
			'start' => '55585317',
			'end' => '55631362',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-039'
		),
		'ENST00000565580' => array(
			'start' => '55403454',
			'end' => '55546934',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-030'
		),
		'ENST00000565908' => array(
			'start' => '55275707',
			'end' => '55588160',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-024'
		),
		'ENST00000566279' => array(
			'start' => '55227911',
			'end' => '55588617',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-045'
		),
		'ENST00000566286' => array(
			'start' => '55227911',
			'end' => '55588535',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-041'
		),
		'ENST00000566376' => array(
			'start' => '55332067',
			'end' => '55403506',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'TCF4-036'
		),
		'ENST00000566514' => array(
			'start' => '55269884',
			'end' => '55585769',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-027'
		),
		'ENST00000566777' => array(
			'start' => '55275680',
			'end' => '55422355',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-032'
		),
		'ENST00000567880' => array(
			'start' => '55227911',
			'end' => '55587116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-046'
		),
		'ENST00000568147' => array(
			'start' => '55350376',
			'end' => '55585968',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-026'
		),
		'ENST00000568169' => array(
			'start' => '55269924',
			'end' => '55664787',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-021'
		),
		'ENST00000568186' => array(
			'start' => '55275660',
			'end' => '55403706',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-033'
		),
		'ENST00000568673' => array(
			'start' => '55227674',
			'end' => '55585908',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-008'
		),
		'ENST00000568740' => array(
			'start' => '55227846',
			'end' => '55589798',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-005'
		),
		'ENST00000569012' => array(
			'start' => '55269875',
			'end' => '55401551',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-034'
		),
		'ENST00000569357' => array(
			'start' => '55403454',
			'end' => '55635892',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-022'
		),
		'ENST00000570146' => array(
			'start' => '55259621',
			'end' => '55275671',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-038'
		),
		'ENST00000570177' => array(
			'start' => '55227984',
			'end' => '55402240',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-012'
		),
		'ENST00000570287' => array(
			'start' => '55227911',
			'end' => '55321986',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-044'
		),
		'ENST00000590810' => array(
			'start' => '55350357',
			'end' => '55401851',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-047'
		),
		'ENST00000616053' => array(
			'start' => '55222331',
			'end' => '55588629',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TCF4-202'
		),
		'ENST00000516628' => array(
			'start' => '55146546',
			'end' => '55146645',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP459-201'
		),
		'ENST00000578110' => array(
			'start' => '55479221',
			'end' => '55479298',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4529-201'
		),
		'ENST00000589125' => array(
			'start' => '55105904',
			'end' => '55124306',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTD-2171N6.1-001'
		),
		'ENST00000592405' => array(
			'start' => '55108311',
			'end' => '55119598',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTD-2171N6.1-002'
		),
		'ENST00000587660' => array(
			'start' => '55452533',
			'end' => '55482940',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-619L19.1-001'
		),
		'ENST00000586467' => array(
			'start' => '55492175',
			'end' => '55496392',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-619L19.2-001'
		),
		'ENSMUST00000066717' => array(
			'start' => '69344146',
			'end' => '69684343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-003'
		),
		'ENSMUST00000078486' => array(
			'start' => '69345721',
			'end' => '69687967',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-201'
		),
		'ENSMUST00000114977' => array(
			'start' => '69593426',
			'end' => '69684526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-008'
		),
		'ENSMUST00000114978' => array(
			'start' => '69593417',
			'end' => '69683252',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-007'
		),
		'ENSMUST00000114980' => array(
			'start' => '69346203',
			'end' => '69683248',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-004'
		),
		'ENSMUST00000114982' => array(
			'start' => '69345771',
			'end' => '69684526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-002'
		),
		'ENSMUST00000114985' => array(
			'start' => '69344510',
			'end' => '69687925',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tcf4-001'
		),
		'ENSMUST00000125154' => array(
			'start' => '69521538',
			'end' => '69564687',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-009'
		),
		'ENSMUST00000126946' => array(
			'start' => '69521793',
			'end' => '69633654',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-010'
		),
		'ENSMUST00000128706' => array(
			'start' => '69344492',
			'end' => '69565506',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-005'
		),
		'ENSMUST00000136019' => array(
			'start' => '69682380',
			'end' => '69683573',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-013'
		),
		'ENSMUST00000136151' => array(
			'start' => '69563335',
			'end' => '69636964',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-011'
		),
		'ENSMUST00000145918' => array(
			'start' => '69599536',
			'end' => '69651289',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-014'
		),
		'ENSMUST00000146908' => array(
			'start' => '69679699',
			'end' => '69684528',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tcf4-012'
		),
		'ENSMUST00000155695' => array(
			'start' => '69345771',
			'end' => '69487850',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tcf4-006'
		),
		'ENSMUST00000082772' => array(
			'start' => '69777936',
			'end' => '69778045',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Gm22508-201'
		),
		'ENSMUST00000158034' => array(
			'start' => '69551963',
			'end' => '69552071',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'Gm24845-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0008CT_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0008CT_0001' => array(
		'genes_in_region' => array(
			'ENSG00000196628' => array(
				[maximum depth reached]
			),
			'ENSG00000267013' => array(
				[maximum depth reached]
			),
			'ENSG00000267028' => array(
				[maximum depth reached]
			),
			'ENSG00000267402' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Colon',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Heart',
			(int) 11 => 'Kidney',
			(int) 12 => 'Lung',
			(int) 13 => 'Ovary',
			(int) 14 => 'Bladder',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Bladder',
			(int) 22 => 'Muscle',
			(int) 23 => 'Lung',
			(int) 24 => 'Adipose',
			(int) 25 => 'Brain',
			(int) 26 => 'Heart',
			(int) 27 => 'Ovary',
			(int) 28 => 'Placenta',
			(int) 29 => 'Testis',
			(int) 30 => 'Adipose',
			(int) 31 => 'Lung',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Breast',
			(int) 36 => 'Lung',
			(int) 37 => 'Adipose',
			(int) 38 => 'Bladder',
			(int) 39 => 'Breast',
			(int) 40 => 'Ovary',
			(int) 41 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000196628' => 'transcription factor 4',
	'ENSG00000252437' => 'RNA, 5S ribosomal pseudogene 459',
	'ENSG00000264571' => 'microRNA 4529',
	'ENSG00000267013' => null,
	'ENSG00000267028' => null,
	'ENSG00000267402' => null,
	'ENSMUSG00000053477' => 'transcription factor 4',
	'ENSMUSG00000064706' => 'predicted gene, 22508',
	'ENSMUSG00000088659' => 'predicted gene, 24845'
)
$gene_name_arr = array(
	'ENSG00000196628' => 'TCF4',
	'ENSG00000252437' => 'RNA5SP459',
	'ENSG00000264571' => 'MIR4529',
	'ENSG00000267013' => 'CTD-2171N6.1',
	'ENSG00000267028' => 'RP11-619L19.1',
	'ENSG00000267402' => 'RP11-619L19.2',
	'ENSMUSG00000053477' => 'Tcf4',
	'ENSMUSG00000064706' => 'Gm22508',
	'ENSMUSG00000088659' => 'Gm24845'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008CT_0001',
			'tax_id' => '9606',
			'chromosome' => '18',
			'seq_start' => '55004656',
			'seq_end' => '55608642',
			'region_length' => '603986',
			'region_type' => 'VISTA',
			'el_id' => 'hs1561'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008CT_0002',
			'tax_id' => '10090',
			'chromosome' => '18',
			'seq_start' => '69306431',
			'seq_end' => '69910049',
			'region_length' => '603618',
			'region_type' => 'VISTA',
			'el_id' => 'hs1561'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 7 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 18 => 'Brain',
	(int) 24 => 'Breast',
	(int) 30 => 'Colon',
	(int) 36 => 'Heart',
	(int) 41 => 'Kidney',
	(int) 46 => 'Liver',
	(int) 52 => 'Lung',
	(int) 60 => 'Muscle',
	(int) 65 => 'Ovary',
	(int) 76 => 'Placenta',
	(int) 82 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 71
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000354452' => array(
		'start' => '55222331',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-201'
	),
	'ENST00000356073' => array(
		'start' => '55222334',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-002'
	),
	'ENST00000398339' => array(
		'start' => '55227936',
		'end' => '55635954',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-004'
	),
	'ENST00000457482' => array(
		'start' => '55227689',
		'end' => '55322294',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-015'
	),
	'ENST00000537578' => array(
		'start' => '55227752',
		'end' => '55589814',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-003'
	),
	'ENST00000537856' => array(
		'start' => '55227849',
		'end' => '55401690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-013'
	),
	'ENST00000540999' => array(
		'start' => '55227690',
		'end' => '55586105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-007'
	),
	'ENST00000543082' => array(
		'start' => '55227689',
		'end' => '55510769',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-009'
	),
	'ENST00000544241' => array(
		'start' => '55227855',
		'end' => '55403995',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-011'
	),
	'ENST00000561831' => array(
		'start' => '55227878',
		'end' => '55302626',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-016'
	),
	'ENST00000561992' => array(
		'start' => '55227864',
		'end' => '55422492',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-010'
	),
	'ENST00000562030' => array(
		'start' => '55350359',
		'end' => '55401335',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-014'
	),
	'ENST00000562543' => array(
		'start' => '55350955',
		'end' => '55591170',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-040'
	),
	'ENST00000562607' => array(
		'start' => '55275648',
		'end' => '55351997',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-035'
	),
	'ENST00000562638' => array(
		'start' => '55275662',
		'end' => '55401712',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-043'
	),
	'ENST00000562680' => array(
		'start' => '55227849',
		'end' => '55401668',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TCF4-018'
	),
	'ENST00000562847' => array(
		'start' => '55350967',
		'end' => '55585966',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-029'
	),
	'ENST00000563686' => array(
		'start' => '55264596',
		'end' => '55464144',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TCF4-017'
	),
	'ENST00000563760' => array(
		'start' => '55254504',
		'end' => '55321805',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-037'
	),
	'ENST00000563824' => array(
		'start' => '55350364',
		'end' => '55585437',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-028'
	),
	'ENST00000563888' => array(
		'start' => '55350402',
		'end' => '55586119',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-025'
	),
	'ENST00000564228' => array(
		'start' => '55227911',
		'end' => '55403714',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-042'
	),
	'ENST00000564343' => array(
		'start' => '55350896',
		'end' => '55591279',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-023'
	),
	'ENST00000564403' => array(
		'start' => '55227936',
		'end' => '55589803',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-019'
	),
	'ENST00000564999' => array(
		'start' => '55227820',
		'end' => '55588610',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-006'
	),
	'ENST00000565018' => array(
		'start' => '55227884',
		'end' => '55589520',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-001'
	),
	'ENST00000565124' => array(
		'start' => '55585280',
		'end' => '55635948',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-020'
	),
	'ENST00000565393' => array(
		'start' => '55585317',
		'end' => '55631362',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-039'
	),
	'ENST00000565580' => array(
		'start' => '55403454',
		'end' => '55546934',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-030'
	),
	'ENST00000565908' => array(
		'start' => '55275707',
		'end' => '55588160',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-024'
	),
	'ENST00000566279' => array(
		'start' => '55227911',
		'end' => '55588617',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-045'
	),
	'ENST00000566286' => array(
		'start' => '55227911',
		'end' => '55588535',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-041'
	),
	'ENST00000566376' => array(
		'start' => '55332067',
		'end' => '55403506',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'TCF4-036'
	),
	'ENST00000566514' => array(
		'start' => '55269884',
		'end' => '55585769',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-027'
	),
	'ENST00000566777' => array(
		'start' => '55275680',
		'end' => '55422355',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-032'
	),
	'ENST00000567880' => array(
		'start' => '55227911',
		'end' => '55587116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-046'
	),
	'ENST00000568147' => array(
		'start' => '55350376',
		'end' => '55585968',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-026'
	),
	'ENST00000568169' => array(
		'start' => '55269924',
		'end' => '55664787',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-021'
	),
	'ENST00000568186' => array(
		'start' => '55275660',
		'end' => '55403706',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-033'
	),
	'ENST00000568673' => array(
		'start' => '55227674',
		'end' => '55585908',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-008'
	),
	'ENST00000568740' => array(
		'start' => '55227846',
		'end' => '55589798',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-005'
	),
	'ENST00000569012' => array(
		'start' => '55269875',
		'end' => '55401551',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-034'
	),
	'ENST00000569357' => array(
		'start' => '55403454',
		'end' => '55635892',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-022'
	),
	'ENST00000570146' => array(
		'start' => '55259621',
		'end' => '55275671',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-038'
	),
	'ENST00000570177' => array(
		'start' => '55227984',
		'end' => '55402240',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-012'
	),
	'ENST00000570287' => array(
		'start' => '55227911',
		'end' => '55321986',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-044'
	),
	'ENST00000590810' => array(
		'start' => '55350357',
		'end' => '55401851',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-047'
	),
	'ENST00000616053' => array(
		'start' => '55222331',
		'end' => '55588629',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TCF4-202'
	),
	'ENST00000516628' => array(
		'start' => '55146546',
		'end' => '55146645',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP459-201'
	),
	'ENST00000578110' => array(
		'start' => '55479221',
		'end' => '55479298',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4529-201'
	),
	'ENST00000589125' => array(
		'start' => '55105904',
		'end' => '55124306',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTD-2171N6.1-001'
	),
	'ENST00000592405' => array(
		'start' => '55108311',
		'end' => '55119598',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTD-2171N6.1-002'
	),
	'ENST00000587660' => array(
		'start' => '55452533',
		'end' => '55482940',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-619L19.1-001'
	),
	'ENST00000586467' => array(
		'start' => '55492175',
		'end' => '55496392',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-619L19.2-001'
	),
	'ENSMUST00000066717' => array(
		'start' => '69344146',
		'end' => '69684343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-003'
	),
	'ENSMUST00000078486' => array(
		'start' => '69345721',
		'end' => '69687967',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-201'
	),
	'ENSMUST00000114977' => array(
		'start' => '69593426',
		'end' => '69684526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-008'
	),
	'ENSMUST00000114978' => array(
		'start' => '69593417',
		'end' => '69683252',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-007'
	),
	'ENSMUST00000114980' => array(
		'start' => '69346203',
		'end' => '69683248',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-004'
	),
	'ENSMUST00000114982' => array(
		'start' => '69345771',
		'end' => '69684526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-002'
	),
	'ENSMUST00000114985' => array(
		'start' => '69344510',
		'end' => '69687925',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tcf4-001'
	),
	'ENSMUST00000125154' => array(
		'start' => '69521538',
		'end' => '69564687',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-009'
	),
	'ENSMUST00000126946' => array(
		'start' => '69521793',
		'end' => '69633654',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-010'
	),
	'ENSMUST00000128706' => array(
		'start' => '69344492',
		'end' => '69565506',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-005'
	),
	'ENSMUST00000136019' => array(
		'start' => '69682380',
		'end' => '69683573',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-013'
	),
	'ENSMUST00000136151' => array(
		'start' => '69563335',
		'end' => '69636964',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-011'
	),
	'ENSMUST00000145918' => array(
		'start' => '69599536',
		'end' => '69651289',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-014'
	),
	'ENSMUST00000146908' => array(
		'start' => '69679699',
		'end' => '69684528',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tcf4-012'
	),
	'ENSMUST00000155695' => array(
		'start' => '69345771',
		'end' => '69487850',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tcf4-006'
	),
	'ENSMUST00000082772' => array(
		'start' => '69777936',
		'end' => '69778045',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Gm22508-201'
	),
	'ENSMUST00000158034' => array(
		'start' => '69551963',
		'end' => '69552071',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'Gm24845-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0008CT_0001' => array(
		'genes_in_region' => array(
			'ENSG00000196628' => array(
				[maximum depth reached]
			),
			'ENSG00000267013' => array(
				[maximum depth reached]
			),
			'ENSG00000267028' => array(
				[maximum depth reached]
			),
			'ENSG00000267402' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Colon',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Heart',
			(int) 11 => 'Kidney',
			(int) 12 => 'Lung',
			(int) 13 => 'Ovary',
			(int) 14 => 'Bladder',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Bladder',
			(int) 22 => 'Muscle',
			(int) 23 => 'Lung',
			(int) 24 => 'Adipose',
			(int) 25 => 'Brain',
			(int) 26 => 'Heart',
			(int) 27 => 'Ovary',
			(int) 28 => 'Placenta',
			(int) 29 => 'Testis',
			(int) 30 => 'Adipose',
			(int) 31 => 'Lung',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Breast',
			(int) 36 => 'Lung',
			(int) 37 => 'Adipose',
			(int) 38 => 'Bladder',
			(int) 39 => 'Breast',
			(int) 40 => 'Ovary',
			(int) 41 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0008CT_0002',
		'tax_id' => '10090',
		'chromosome' => '18',
		'seq_start' => '69306431',
		'seq_end' => '69910049',
		'region_length' => '603618',
		'region_type' => 'VISTA',
		'el_id' => 'hs1561'
	)
)
$gene_el = array(
	'ENST00000586467' => array(
		'Adipose' => array(
			'average_FPKM' => '0.101',
			'stddev_FPKM' => '0.00'
		),
		'Bladder' => array(
			'average_FPKM' => '0.503',
			'stddev_FPKM' => '0.00'
		),
		'Breast' => array(
			'average_FPKM' => '0.113',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.406',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.069',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000267402'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.101',
		'stddev_FPKM' => '0.00'
	),
	'Bladder' => array(
		'average_FPKM' => '0.503',
		'stddev_FPKM' => '0.00'
	),
	'Breast' => array(
		'average_FPKM' => '0.113',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.406',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.069',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000586467'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
hs1561		VISTA	10090	18:69306431-69910049
Gene		Transcript	Position	Biotype