C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008DH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1311 VISTA 9606 11:109830170-110432509
GeneTranscriptPositionBiotype
ENSG00000137710 (RDX)
radixin 		ENST00000343115 (RDX-001) 110229450-110296722 protein_coding
ENST00000405097 (RDX-002) 110195561-110296712 protein_coding
ENST00000527537 (RDX-009) 110229447-110236671 retained_intron
ENST00000528498 (RDX-006) 110174880-110296712 protein_coding
ENST00000528556 (RDX-013) 110263960-110296597 nonsense_mediated_decay
ENST00000528900 (RDX-003) 110195561-110296712 protein_coding
ENST00000529774 (RDX-015) 110253945-110258208 retained_intron
ENST00000530085 (RDX-016) 110231838-110237886 protein_coding
ENST00000530131 (RDX-007) 110231551-110296614 nonsense_mediated_decay
ENST00000530301 (RDX-004) 110195561-110296712 protein_coding
ENST00000530749 (RDX-005) 110174880-110296712 nonsense_mediated_decay
ENST00000532118 (RDX-014) 110258179-110288391 protein_coding
ENST00000532461 (RDX-008) 110229450-110237857 retained_intron
ENST00000533678 (RDX-011) 110264779-110296618 nonsense_mediated_decay
ENST00000533961 (RDX-017) 110231550-110233523 retained_intron
ENST00000533991 (RDX-010) 110264045-110296640 protein_coding
ENST00000534683 (RDX-012) 110255306-110296612 protein_coding
ENST00000544551 (RDX-201) 110229443-110296712 protein_coding
ENSG00000137714 (FDX1)
ferredoxin 1 		ENST00000260270 (FDX1-001) 110429883-110464881 protein_coding
ENSG00000149289 (ZC3H12C)
zinc finger CCCH-type containing 12C 		ENST00000278590 (ZC3H12C-001) 110093361-110171841 protein_coding
ENST00000453089 (ZC3H12C-004) 110135854-110171839 protein_coding
ENST00000528673 (ZC3H12C-003) 110131004-110165934 protein_coding
ENSG00000224776 (RP11-361A21.1)
 ENST00000481955 (RP11-361A21.1-001) 109982192-109983043 processed_pseudogene
ENSG00000254416 (RP11-347E10.1)
 ENST00000526605 (RP11-347E10.1-001) 110355130-110406400 lincRNA
ENST00000526703 (RP11-347E10.1-002) 110355199-110381986 lincRNA
ENSG00000254798 (TFAMP2)
transcription factor A, mitochondrial pseudogene 2 		ENST00000531132 (TFAMP2-001) 109907004-109907741 processed_pseudogene
ENSG00000255210 (RP11-344L21.1)
 ENST00000525414 (RP11-344L21.1-001) 110049528-110050160 processed_pseudogene
CIL_0008DH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1311 VISTA 10090 9:51847924-52450392
GeneTranscriptPositionBiotype
ENSMUSG00000032050 (Rdx)
radixin 		ENSMUST00000000590 (Rdx-201) 52047941-52088737 protein_coding
ENSMUST00000061352 (Rdx-202) 52047941-52075177 protein_coding
ENSMUST00000163153 (Rdx-203) 52047150-52088737 protein_coding
ENSMUSG00000032051 (Fdx1)
ferredoxin 1 		ENSMUST00000034552 (Fdx1-201) 51943307-51963533 protein_coding
ENSMUSG00000035164 (Zc3h12c)
zinc finger CCCH type containing 12C 		ENSMUST00000165519 (Zc3h12c-201) 52111985-52168111 protein_coding
ENSMUSG00000053199 (Arhgap20)
Rho GTPase activating protein 20 		ENSMUST00000065496 (Arhgap20-002) 51765352-51853856 protein_coding
ENSMUST00000124907 (Arhgap20-005) 51765337-51790249 retained_intron
ENSMUST00000126567 (Arhgap20-006) 51816013-51829397 processed_transcript
ENSMUST00000130405 (Arhgap20-001) 51765660-51850651 protein_coding
ENSMUST00000146509 (Arhgap20-004) 51765345-51825685 retained_intron
ENSMUST00000149754 (Arhgap20-003) 51831772-51848649 processed_transcript
ENSMUSG00000074354 (Arhgap20os)
Rho GTPase activating protein 20, opposite strand 		ENSMUST00000125400 (Arhgap20os-001) 51839507-51875803 antisense
ENSMUST00000130086 (Arhgap20os-004) 51840372-51875788 antisense
ENSMUST00000142579 (Arhgap20os-002) 51839515-51875885 antisense
ENSMUST00000152203 (Arhgap20os-003) 51832814-51875886 antisense
ENSMUSG00000098076 (Gm6981)
predicted pseudogene 6981 		ENSMUST00000182467 (Gm6981-001) 52002274-52003281 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008DH_0001ENSG00000137710ENST00000343115ENST00000405097ENST00000527537ENST00000528498ENST00000528556ENST00000528900ENST00000529774ENST00000530085ENST00000530131ENST00000530301ENST00000530749ENST00000532118ENST00000532461ENST00000533678ENST00000533961ENST00000533991ENST00000534683ENST00000544551ENSG00000137714ENST00000260270ENSG00000149289ENST00000278590ENST00000453089ENST00000528673ENSG00000224776ENST00000481955ENSG00000254416ENST00000526605ENST00000526703ENSG00000254798ENST00000531132ENSG00000255210ENST00000525414CIL_0008DH_0002ENSMUSG00000032050ENSMUST00000000590ENSMUST00000061352ENSMUST00000163153ENSMUSG00000032051ENSMUST00000034552ENSMUSG00000035164ENSMUST00000165519ENSMUSG00000053199ENSMUST00000065496ENSMUST00000124907ENSMUST00000126567ENSMUST00000130405ENSMUST00000146509ENSMUST00000149754ENSMUSG00000074354ENSMUST00000125400ENSMUST00000130086ENSMUST00000142579ENSMUST00000152203ENSMUSG00000098076ENSMUST00000182467
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008DH_0001ENSG00000137710ENST00000343115ENST00000405097ENST00000532461ENST00000544551ENSG00000137714ENST00000260270ENSG00000149289ENST00000278590ENST00000453089ENST00000528673ENSG00000224776ENST00000481955ENSG00000254416ENST00000526605ENST00000526703ENSG00000254798ENST00000531132ENSG00000255210ENST00000525414CIL_0008DH_0002ENSMUSG00000032050ENSMUST00000000590ENSMUST00000061352ENSMUST00000163153ENSMUSG00000032051ENSMUST00000034552ENSMUSG00000035164ENSMUST00000165519ENSMUSG00000053199ENSMUST00000065496ENSMUST00000124907ENSMUST00000126567ENSMUST00000130405ENSMUST00000146509ENSMUSG00000074354ENSMUST00000125400ENSMUST00000142579ENSMUST00000152203ENSMUSG00000098076ENSMUST00000182467
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137710 ENST00000343115 10.703±0.00 3.463±0.00 2.784±0.00 4.383±2.95 4.806±0.00 5.658±2.53 8.545±3.03 7.236±3.47 5.763±1.87 6.545±0.53 8.302±7.01 6.411±1.52 3.769±1.23 10.126±0.30
ENST00000405097 N/A N/A N/A 1.595±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532461 N/A 4.185±0.00 N/A N/A N/A 1.220±0.00 N/A N/A N/A N/A 2.248±0.00 7.870±4.64 N/A N/A
ENST00000533678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544551 7.789±0.00 2.282±0.00 N/A N/A 1.986±0.28 N/A 2.846±0.00 3.221±0.00 1.431±0.00 3.944±0.00 N/A N/A N/A 4.677±1.05
ENSG00000137714 ENST00000260270 3.960±0.00 5.182±0.00 3.318±0.00 3.600±0.64 4.056±1.97 3.359±1.17 4.254±1.74 8.729±1.66 7.591±3.48 3.368±2.23 2.972±1.50 10.757±8.15 12.760±2.69 4.928±1.02
ENSG00000149289 ENST00000278590 2.181±0.00 0.910±0.00 N/A 1.683±0.00 1.340±0.00 0.895±0.29 2.451±0.00 1.415±0.28 0.818±0.42 1.524±0.00 3.877±3.11 1.037±0.61 0.435±0.07 0.917±0.06
ENST00000453089 N/A N/A 1.085±0.00 0.326±0.00 0.239±0.00 1.538±0.00 0.240±0.00 0.637±0.00 0.993±0.00 0.758±0.00 0.693±0.00 0.442±0.26 N/A N/A
ENST00000528673 N/A N/A 0.977±0.00 N/A 0.536±0.00 0.739±0.00 1.291±0.00 N/A 3.227±0.00 1.097±0.00 1.042±0.00 N/A N/A N/A
ENSG00000224776 ENST00000481955 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A
ENSG00000254416 ENST00000526605 N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A 0.119±0.04 0.144±0.00 0.064±0.00
ENST00000526703 N/A 0.030±0.00 0.175±0.00 0.064±0.00 N/A N/A N/A 0.338±0.00 N/A N/A N/A 0.131±0.07 N/A 0.560±0.00
ENSG00000254798 ENST00000531132 N/A N/A 0.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255210 ENST00000525414 0.035±0.00 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032050 ENSMUST00000000590 3.202±1.21 N/A 5.463±0.00 5.674±0.93 2.916±0.66 1.088±0.19 2.278±0.58 6.467±0.51 4.552±1.74 7.436±1.99 25.540±3.40 5.749±1.49 20.937±21.99 7.484±2.18
ENSMUST00000061352 N/A 3.573±1.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.489±0.11
ENSMUST00000163153 16.345±2.19 12.930±1.90 12.841±0.86 17.749±2.32 7.949±2.84 3.419±0.46 12.251±1.44 17.606±2.91 24.358±6.79 27.058±6.56 7.352±1.93 31.922±17.62 41.793±15.05 4.605±0.96
ENSMUSG00000032051 ENSMUST00000034552 20.648±7.93 4398.493±2700.96 22.393±1.57 9.628±2.03 54.384±30.11 54.163±4.76 43.611±9.30 36.195±4.54 52.229±49.52 48.885±39.68 17.128±1.95 923.320±831.61 85.734±45.04 30.593±8.62
ENSMUSG00000035164 ENSMUST00000165519 1.059±0.88 3.869±1.81 N/A 1.710±1.17 0.869±0.54 0.735±0.05 1.215±0.00 2.064±1.55 0.770±0.44 1.804±0.76 N/A 3.282±1.84 0.455±0.23 0.800±0.57
ENSMUSG00000053199 ENSMUST00000065496 0.921±0.06 0.139±0.07 0.745±0.14 2.671±0.73 0.521±0.23 0.937±0.51 1.249±0.19 0.045±0.03 0.011±0.01 0.856±0.31 4.254±1.25 0.506±0.15 0.127±0.14 2.154±0.68
ENSMUST00000124907 N/A N/A N/A N/A N/A 0.242±0.01 N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000126567 N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A 0.521±0.37 N/A
ENSMUST00000130405 N/A 0.077±0.00 N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A 0.464±0.05 N/A N/A
ENSMUST00000146509 N/A 0.383±0.13 N/A N/A 0.698±0.10 1.174±0.41 N/A N/A N/A N/A N/A 1.500±0.68 N/A N/A
ENSMUST00000149754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074354 ENSMUST00000125400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.042±0.16 0.193±0.03 N/A
ENSMUST00000130086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.043±0.23 N/A N/A
ENSMUST00000152203 N/A N/A N/A N/A N/A N/A N/A 0.032±0.01 N/A N/A N/A 1.046±0.31 N/A N/A
ENSMUSG00000098076 ENSMUST00000182467 0.510±0.23 0.171±0.07 0.173±0.00 0.533±0.27 0.267±0.12 0.175±0.10 0.202±0.10 0.310±0.19 0.213±0.12 0.319±0.04 0.324±0.16 0.605±0.29 0.719±0.63 7.789±0.00

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