C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ET_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1229 VISTA 9606 2:65870410-66471811
GeneTranscriptPositionBiotype
ENSG00000143995 (MEIS1)
Meis homeobox 1 		ENST00000272369 (MEIS1-001) 66435400-66573869 protein_coding
ENST00000398506 (MEIS1-003) 66437393-66573329 protein_coding
ENST00000409517 (MEIS1-013) 66461798-66572454 processed_transcript
ENST00000409622 (MEIS1-010) 66440097-66512191 processed_transcript
ENST00000437869 (MEIS1-006) 66440678-66464220 protein_coding
ENST00000450027 (MEIS1-014) 66508927-66568745 processed_transcript
ENST00000466811 (MEIS1-011) 66440707-66454735 processed_transcript
ENST00000475239 (MEIS1-012) 66445193-66567500 processed_transcript
ENST00000488550 (MEIS1-002) 66435558-66572454 protein_coding
ENST00000490726 (MEIS1-005) 66436917-66441440 processed_transcript
ENST00000491706 (MEIS1-008) 66435169-66443772 retained_intron
ENST00000495021 (MEIS1-016) 66439321-66572759 protein_coding
ENST00000496248 (MEIS1-009) 66433452-66439967 processed_transcript
ENST00000498705 (MEIS1-007) 66442775-66512294 retained_intron
ENST00000542964 (MEIS1-015) 66496026-66571251 processed_transcript
ENST00000560281 (MEIS1-019) 66435133-66568536 protein_coding
ENST00000606455 (MEIS1-018) 66442965-66568714 processed_transcript
ENSG00000204929 (AC074391.1)
 ENST00000377977 (AC074391.1-010) 65436730-65692185 lincRNA
ENST00000412986 (AC074391.1-008) 65897622-65899515 lincRNA
ENST00000414811 (AC074391.1-006) 65731675-65770104 lincRNA
ENST00000441506 (AC074391.1-007) 65732893-65754911 lincRNA
ENST00000606556 (AC074391.1-011) 65921929-66084639 lincRNA
ENST00000606978 (AC074391.1-009) 65436711-66072621 lincRNA
ENST00000607539 (AC074391.1-012) 66078458-66084638 lincRNA
ENSG00000225815 (AC092669.6)
 ENST00000412313 (AC092669.6-001) 66327349-66328643 lincRNA
ENST00000449673 (AC092669.6-002) 66327361-66328984 lincRNA
ENSG00000227293 (AC118345.1)
 ENST00000411785 (AC118345.1-001) 66235377-66236213 lincRNA
ENSG00000232164 (AC092669.3)
 ENST00000428647 (AC092669.3-001) 66383306-66392450 lincRNA
ENSG00000241254 (AC092669.2)
 ENST00000437790 (AC092669.2-001) 66327349-66328841 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0008ET_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1229 VISTA 10090 11:18964922-19566021
GeneTranscriptPositionBiotype
ENSMUSG00000020160 (Meis1)
Meis homeobox 1 		ENSMUST00000068264 (Meis1-001) 18880662-19018958 protein_coding
ENSMUST00000102878 (Meis1-004) 18880428-19018714 nonsense_mediated_decay
ENSMUST00000118661 (Meis1-006) 18880668-19012002 processed_transcript
ENSMUST00000125722 (Meis1-002) 18986774-19018922 retained_intron
ENSMUST00000137300 (Meis1-003) 19009784-19018922 retained_intron
ENSMUST00000144988 (Meis1-005) 18879817-19018985 protein_coding
ENSMUST00000177357 (Meis1-007) 18881360-19016289 nonsense_mediated_decay
ENSMUST00000177417 (Meis1-008) 18880675-19018714 protein_coding
ENSMUST00000185131 (Meis1-201) 18880428-19018969 protein_coding
ENSMUSG00000082737 (Gm12026)
predicted gene 12026 		ENSMUST00000120961 (Gm12026-001) 19383685-19384708 processed_pseudogene
ENSMUSG00000086025 (4933406G16Rik)
RIKEN cDNA 4933406G16 gene 		ENSMUST00000144854 (4933406G16Rik-001) 19065276-19075740 lincRNA
ENSMUSG00000087507 (Gm16141)
predicted gene 16141 		ENSMUST00000152073 (Gm16141-001) 19013817-19015154 antisense

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ET_0001ENSG00000143995ENST00000272369ENST00000398506ENST00000409517ENST00000409622ENST00000437869ENST00000450027ENST00000466811ENST00000475239ENST00000488550ENST00000490726ENST00000491706ENST00000495021ENST00000496248ENST00000498705ENST00000542964ENST00000560281ENST00000606455ENSG00000204929ENST00000377977ENST00000412986ENST00000414811ENST00000441506ENST00000606556ENST00000606978ENST00000607539ENSG00000225815ENST00000412313ENST00000449673ENSG00000227293ENST00000411785ENSG00000232164ENST00000428647ENSG00000241254ENST00000437790CIL_0008ET_0002ENSMUSG00000020160ENSMUST00000068264ENSMUST00000102878ENSMUST00000118661ENSMUST00000125722ENSMUST00000137300ENSMUST00000144988ENSMUST00000177357ENSMUST00000177417ENSMUST00000185131ENSMUSG00000082737ENSMUST00000120961ENSMUSG00000086025ENSMUST00000144854ENSMUSG00000087507ENSMUST00000152073
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ET_0001ENSG00000143995ENST00000272369ENST00000398506ENST00000409517ENST00000437869ENST00000488550ENST00000491706ENST00000495021ENST00000560281ENSG00000204929ENST00000377977ENST00000412986ENST00000441506ENST00000606556ENST00000606978ENSG00000225815ENST00000412313ENSG00000227293ENST00000411785ENSG00000232164ENST00000428647ENSG00000241254ENST00000437790CIL_0008ET_0002ENSMUSG00000020160ENSMUST00000068264ENSMUST00000102878ENSMUST00000118661ENSMUST00000144988ENSMUST00000177357ENSMUST00000177417ENSMUST00000185131ENSMUSG00000082737ENSMUST00000120961ENSMUSG00000086025ENSMUST00000144854ENSMUSG00000087507ENSMUST00000152073
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143995 ENST00000272369 N/A N/A N/A N/A N/A N/A 0.590±0.00 0.551±0.00 N/A N/A N/A N/A N/A N/A
ENST00000398506 N/A N/A N/A N/A N/A N/A N/A 0.399±0.00 N/A N/A N/A 5.419±0.00 0.572±0.03 N/A
ENST00000409517 0.519±0.00 2.229±0.00 N/A 1.159±0.08 1.504±0.00 9.132±0.00 2.554±0.00 2.737±0.00 0.525±0.00 3.120±0.00 0.869±0.00 1.221±0.00 2.366±1.18 3.875±2.75
ENST00000409622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437869 N/A N/A N/A N/A N/A N/A N/A 2.809±0.00 N/A N/A 1.583±0.00 N/A N/A N/A
ENST00000450027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488550 0.276±0.00 0.703±0.00 1.230±0.00 0.518±0.11 1.948±1.34 1.867±0.18 0.639±0.00 N/A 4.734±0.00 1.976±1.24 0.170±0.00 2.888±1.94 0.468±0.18 0.745±0.38
ENST00000490726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491706 N/A N/A 1.529±0.00 0.790±0.00 N/A N/A N/A N/A 11.898±0.00 N/A 0.666±0.00 3.572±0.00 5.442±0.00 N/A
ENST00000495021 0.809±0.00 1.208±0.00 N/A 1.289±0.00 1.714±0.57 5.831±2.03 1.683±0.68 N/A 2.744±2.22 2.213±0.44 0.234±0.00 10.526±9.49 2.166±0.35 3.321±2.00
ENST00000496248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560281 0.337±0.00 0.582±0.00 1.967±0.00 0.886±0.24 3.285±0.00 N/A 1.670±0.00 0.363±0.00 8.280±0.00 4.305±0.00 0.551±0.00 3.819±2.19 N/A 0.548±0.00
ENST00000606455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204929 ENST00000377977 0.026±0.00 N/A N/A 0.030±0.00 0.140±0.08 N/A 0.012±0.00 0.108±0.00 0.137±0.09 0.036±0.00 N/A 0.061±0.03 0.046±0.00 N/A
ENST00000412986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 0.619±0.15
ENST00000414811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.764±0.11
ENST00000606556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.691±0.10
ENST00000606978 0.055±0.00 0.014±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.037±0.01 0.047±0.00 N/A
ENST00000607539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225815 ENST00000412313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00
ENST00000449673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227293 ENST00000411785 N/A N/A N/A N/A N/A N/A N/A 0.393±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000232164 ENST00000428647 2.132±0.00 6.200±0.00 10.896±0.00 4.604±0.49 7.395±4.40 5.151±3.36 5.907±1.53 2.963±0.51 6.276±5.35 6.163±3.90 1.629±0.43 15.926±19.56 18.276±22.69 38.700±35.27
ENSG00000241254 ENST00000437790 N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A N/A 0.052±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020160 ENSMUST00000068264 6.023±4.37 6.703±1.19 39.127±2.56 9.189±7.26 1.979±0.55 2.639±0.49 3.094±0.18 1.591±0.42 1.459±0.68 9.113±1.88 0.599±0.21 7.711±3.81 1.756±0.94 0.629±0.32
ENSMUST00000102878 N/A 6.838±0.75 N/A N/A 1.341±0.11 1.208±0.22 N/A N/A 0.454±0.00 N/A N/A 4.107±0.00 N/A N/A
ENSMUST00000118661 6.417±4.11 13.055±3.00 27.636±7.37 10.730±4.27 1.727±0.39 2.760±0.49 1.816±0.09 1.704±0.78 1.847±0.94 6.827±1.73 0.449±0.00 12.855±5.09 1.996±0.94 0.474±0.05
ENSMUST00000125722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144988 N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A 0.200±0.00 N/A
ENSMUST00000177357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A
ENSMUST00000177417 1.762±1.25 N/A 6.507±0.65 1.505±1.24 0.451±0.07 N/A N/A 0.391±0.08 0.374±0.15 2.017±0.01 0.158±0.06 1.733±0.07 0.352±0.20 N/A
ENSMUST00000185131 4.191±2.08 N/A N/A N/A 0.979±0.67 0.973±0.15 N/A 0.954±0.28 N/A 4.770±1.07 N/A 7.748±2.91 0.242±0.00 0.188±0.00
ENSMUSG00000082737 ENSMUST00000120961 N/A N/A 0.030±0.02 0.030±0.02 N/A N/A N/A N/A 0.034±0.01 N/A 0.022±0.00 N/A 0.037±0.00 0.055±0.00
ENSMUSG00000086025 ENSMUST00000144854 0.025±0.00 N/A N/A 0.020±0.00 N/A N/A 0.024±0.00 N/A 0.013±0.00 0.090±0.00 N/A 0.097±0.06 N/A 5.362±0.00
ENSMUSG00000087507 ENSMUST00000152073 0.932±0.58 0.877±0.21 1.264±0.10 0.405±0.06 0.213±0.11 0.137±0.09 0.461±0.06 0.234±0.08 0.102±0.06 0.972±0.18 0.161±0.06 0.680±0.36 0.120±0.03 0.140±0.06

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