C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008G5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1032 VISTA 9606 10:117249689-117851033
GeneTranscriptPositionBiotype
ENSG00000165650 (PDZD8)
PDZ domain containing 8 		ENST00000334464 (PDZD8-001) 117277274-117375467 protein_coding
ENST00000482496 (PDZD8-002) 117284307-117314235 processed_transcript
ENST00000489302 (PDZD8-003) 117285108-117318978 processed_transcript
ENST00000489491 (PDZD8-004) 117290186-117374481 processed_transcript
ENSG00000170370 (EMX2)
empty spiracles homeobox 2 		ENST00000442245 (EMX2-201) 117542445-117549545 protein_coding
ENST00000546446 (EMX2-003) 117544866-117548799 processed_transcript
ENST00000553456 (EMX2-001) 117542444-117549546 protein_coding
ENST00000616794 (EMX2-002) 117543568-117549542 protein_coding
ENSG00000229847 (EMX2OS)
EMX2 opposite strand/antisense RNA 		ENST00000412075 (EMX2OS-005) 117473215-117477173 antisense
ENST00000423419 (EMX2OS-003) 117490649-117494688 antisense
ENST00000424371 (EMX2OS-004) 117473237-117486228 antisense
ENST00000440007 (EMX2OS-001) 117484295-117542495 antisense
ENST00000450314 (EMX2OS-002) 117473215-117542319 antisense
ENST00000551288 (EMX2OS-006) 117484295-117545068 antisense
ENST00000611404 (EMX2OS-007) 117473299-117476919 antisense
ENSG00000234952 (RP11-328K15.1)
 ENST00000445647 (RP11-328K15.1-001) 117735313-117736407 lincRNA
ENSG00000235198 (CTA-109P11.1)
 ENST00000450247 (CTA-109P11.1-001) 117562084-117572457 lincRNA
ENSG00000263041 (RP11-355F22.1)
 ENST00000575236 (RP11-355F22.1-001) 117825903-117830518 lincRNA
ENSG00000277879 (RP11-129M16.4)
 ENST00000614747 (RP11-129M16.4-001) 117267116-117268668 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008G5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1032 VISTA 10090 19:59165505-59766798
GeneTranscriptPositionBiotype
ENSMUSG00000006270 (Vax1)
ventral anterior homeobox 1 		ENSMUST00000172821 (Vax1-001) 59166187-59170056 protein_coding
ENSMUST00000173710 (Vax1-004) 59166598-59166980 processed_transcript
ENSMUSG00000025094 (Slc18a2)
solute carrier family 18 (vesicular monoamine), member 2 		ENSMUST00000026084 (Slc18a2-201) 59260878-59296012 protein_coding
ENSMUSG00000040901 (Kcnk18)
potassium channel, subfamily K, member 18 		ENSMUST00000065204 (Kcnk18-201) 59219648-59237370 protein_coding
ENSMUSG00000043969 (Emx2)
empty spiracles homeobox 2 		ENSMUST00000062216 (Emx2-001) 59458372-59465357 protein_coding
ENSMUST00000174353 (Emx2-002) 59459519-59465353 protein_coding
ENSMUST00000174573 (Emx2-003) 59462802-59464215 processed_transcript
ENSMUSG00000067038 (Rps12-ps3)
ribosomal protein S12, pseudogene 3 		ENSMUST00000086764 (Rps12-ps3-201) 59322290-59322783 protein_coding
ENSMUSG00000074746 (Pdzd8)
PDZ domain containing 8 		ENSMUST00000099274 (Pdzd8-201) 59296084-59345780 protein_coding
ENSMUSG00000087095 (Emx2os)
Emx2 opposite strand/antisense transcript (non-protein coding) 		ENSMUST00000136990 (Emx2os-001) 59425104-59458635 antisense
ENSMUSG00000100119 (RP23-103C10.3)
RIKEN cDNA 2700089I24 gene 		ENSMUST00000190204 (RP23-103C10.3-001) 59493136-59559391 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008G5_0001ENSG00000165650ENST00000334464ENST00000482496ENST00000489302ENST00000489491ENSG00000170370ENST00000442245ENST00000546446ENST00000553456ENST00000616794ENSG00000229847ENST00000412075ENST00000423419ENST00000424371ENST00000440007ENST00000450314ENST00000551288ENST00000611404ENSG00000234952ENST00000445647ENSG00000235198ENST00000450247ENSG00000263041ENST00000575236ENSG00000277879ENST00000614747CIL_0008G5_0002ENSMUSG00000006270ENSMUST00000172821ENSMUST00000173710ENSMUSG00000025094ENSMUST00000026084ENSMUSG00000040901ENSMUST00000065204ENSMUSG00000043969ENSMUST00000062216ENSMUST00000174353ENSMUST00000174573ENSMUSG00000067038ENSMUST00000086764ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990ENSMUSG00000100119ENSMUST00000190204
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008G5_0001ENSG00000165650ENST00000334464ENST00000482496ENST00000489302ENSG00000170370ENST00000442245ENST00000546446ENST00000553456ENST00000616794ENSG00000229847ENST00000412075ENST00000423419ENST00000440007ENST00000551288ENSG00000234952ENST00000445647ENSG00000235198ENST00000450247ENSG00000263041ENST00000575236ENSG00000277879ENST00000614747CIL_0008G5_0002ENSMUSG00000006270ENSMUST00000172821ENSMUST00000173710ENSMUSG00000025094ENSMUST00000026084ENSMUSG00000040901ENSMUST00000065204ENSMUSG00000043969ENSMUST00000062216ENSMUST00000174353ENSMUST00000174573ENSMUSG00000067038ENSMUST00000086764ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990ENSMUSG00000100119ENSMUST00000190204
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165650 ENST00000334464 6.517±0.00 2.384±0.00 2.129±0.00 6.354±2.65 2.889±0.25 4.614±0.10 2.208±0.88 5.599±0.75 4.074±0.98 3.640±0.47 1.441±0.71 8.551±4.37 1.958±0.45 9.228±2.76
ENST00000482496 N/A N/A N/A N/A N/A N/A 1.878±0.00 N/A N/A N/A N/A 16.091±0.00 N/A 13.693±0.00
ENST00000489302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.940±0.00
ENST00000489491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170370 ENST00000442245 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENST00000546446 N/A 1.331±0.00 N/A 18.218±0.00 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553456 4.239±0.00 N/A 1.935±0.00 4.454±3.72 2.708±0.00 N/A 0.184±0.00 35.855±0.00 N/A 0.080±0.00 0.581±0.00 4.394±1.96 0.399±0.16 5.352±4.45
ENST00000616794 5.133±0.00 0.765±0.00 N/A 12.856±0.00 N/A N/A N/A N/A N/A N/A N/A 7.240±2.79 0.723±0.35 10.069±0.00
ENSG00000229847 ENST00000412075 N/A N/A N/A N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423419 N/A N/A N/A N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440007 2.266±0.00 0.939±0.00 1.410±0.00 5.260±3.80 2.020±0.00 0.300±0.28 0.097±0.07 28.252±0.00 0.114±0.09 0.065±0.00 0.479±0.00 4.726±4.35 0.624±0.41 3.503±2.41
ENST00000450314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551288 N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A
ENST00000611404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234952 ENST00000445647 N/A N/A N/A 0.070±0.00 0.135±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.14
ENSG00000235198 ENST00000450247 N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A 0.300±0.00 N/A N/A
ENSG00000263041 ENST00000575236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00
ENSG00000277879 ENST00000614747 N/A N/A N/A N/A 4.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006270 ENSMUST00000172821 0.028±0.00 0.073±0.02 0.012±0.00 3.772±2.46 N/A N/A N/A 0.038±0.00 0.014±0.00 0.029±0.00 0.122±0.00 0.063±0.01 0.070±0.05 0.236±0.09
ENSMUST00000173710 0.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.345±0.26 0.616±0.00
ENSMUSG00000025094 ENSMUST00000026084 0.171±0.08 6.646±3.78 0.482±0.00 9.610±6.17 0.628±0.35 1.350±0.85 0.487±0.15 0.833±0.38 0.698±0.63 0.383±0.18 0.414±0.05 42.011±20.23 1.209±0.59 0.234±0.21
ENSMUSG00000040901 ENSMUST00000065204 0.010±0.00 0.017±0.00 0.014±0.01 0.016±0.00 N/A N/A N/A 0.026±0.01 0.005±0.00 N/A 0.021±0.00 0.406±0.20 0.203±0.30 0.039±0.01
ENSMUSG00000043969 ENSMUST00000062216 5.727±5.22 0.116±0.03 0.075±0.03 5.112±3.47 2.154±1.56 0.017±0.00 N/A 10.381±3.56 0.024±0.01 0.011±0.00 0.105±0.09 18.115±9.29 0.239±0.32 1.036±0.55
ENSMUST00000174353 N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A 0.021±0.01 N/A 0.048±0.01 9.369±0.00 0.120±0.05 3.113±0.00
ENSMUST00000174573 N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.02 N/A N/A N/A N/A N/A
ENSMUSG00000067038 ENSMUST00000086764 17.676±2.76 116.816±24.91 37.911±5.98 20.617±6.13 13.290±6.56 44.967±34.57 11.130±6.25 31.308±13.76 72.039±46.91 17.780±1.35 11.229±0.90 135.816±51.67 150.586±233.91 28.481±5.98
ENSMUSG00000074746 ENSMUST00000099274 4.347±1.76 11.922±1.53 4.177±0.56 6.652±1.61 5.223±3.50 8.379±2.65 2.063±0.16 3.404±0.85 3.348±0.51 8.691±1.79 1.602±0.12 11.423±4.09 6.235±1.22 22.074±8.44
ENSMUSG00000087095 ENSMUST00000136990 1.040±0.78 0.027±0.02 0.032±0.01 0.683±0.40 0.250±0.01 N/A 0.011±0.01 0.711±0.10 0.005±0.00 0.023±0.01 0.047±0.02 1.099±0.60 0.038±0.04 N/A
ENSMUSG00000100119 ENSMUST00000190204 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.041±0.02 N/A 0.068±0.03

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