C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ID_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs13 VISTA 9606 16:78102512-78703811
GeneTranscriptPositionBiotype
ENSG00000260014 (LSM3P5)
LSM3 pseudogene 5 		ENST00000566307 (LSM3P5-001) 78355529-78355834 processed_pseudogene
ENSG00000260733 (RP11-264L1.4)
 ENST00000563408 (RP11-264L1.4-001) 78495926-78506568 antisense
ENSG00000260969 (RP11-190D6.2)
 ENST00000567099 (RP11-190D6.2-001) 78237362-78241218 antisense
ENSG00000261837 (RP11-264L1.3)
 ENST00000568764 (RP11-264L1.3-001) 78534374-78535648 sense_intronic
ENSG00000276007 (RP11-358L22.3)
 ENST00000612986 (RP11-358L22.3-001) 78123243-78124332 sense_intronic
ENSG00000279129 (RP11-264L1.2)
 ENST00000624947 (RP11-264L1.2-001) 78550739-78553296 TEC
ENST00000625162 (RP11-264L1.2-201) 78550739-78553290 TEC
ENSG00000279887 (RP11-264L1.1)
 ENST00000623121 (RP11-264L1.1-001) 78525189-78526535 TEC
ENSG00000279991 (RP11-190D6.1)
 ENST00000624577 (RP11-190D6.1-001) 78166717-78168514 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008ID_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs13 VISTA 10090 8:114391554-114992470
GeneTranscriptPositionBiotype
ENSMUSG00000004637 (Wwox)
WW domain-containing oxidoreductase 		ENSMUST00000004756 (Wwox-001) 114439655-115352708 protein_coding
ENSMUST00000109107 (Wwox-002) 114439702-114474529 protein_coding
ENSMUST00000109108 (Wwox-004) 114439695-114875238 protein_coding
ENSMUST00000159870 (Wwox-007) 114712167-115019702 processed_transcript
ENSMUST00000160005 (Wwox-005) 114439702-114453818 processed_transcript
ENSMUST00000160205 (Wwox-008) 114608436-114706324 processed_transcript
ENSMUST00000160862 (Wwox-003) 114439695-114718679 protein_coding
ENSMUST00000161753 (Wwox-009) 114448210-114514288 processed_transcript
ENSMUST00000162052 (Wwox-006) 114712167-115352143 processed_transcript
ENSMUSG00000008874 (Clec3a)
C-type lectin domain family 3, member a 		ENSMUST00000009018 (Clec3a-001) 114418086-114425846 protein_coding
ENSMUSG00000089723 (Gm16117)
predicted gene 16117 		ENSMUST00000160544 (Gm16117-001) 114639546-114642114 antisense
ENSMUSG00000089797 (Gm16118)
predicted gene 16118 		ENSMUST00000161914 (Gm16118-001) 114698439-114708006 antisense
ENSMUSG00000090217 (Gm16116)
predicted gene 16116 		ENSMUST00000159472 (Gm16116-001) 114591303-114594900 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ID_0001ENSG00000260014ENST00000566307ENSG00000260733ENST00000563408ENSG00000260969ENST00000567099ENSG00000261837ENST00000568764ENSG00000276007ENST00000612986ENSG00000279129ENST00000624947ENST00000625162ENSG00000279887ENST00000623121ENSG00000279991ENST00000624577CIL_0008ID_0002ENSMUSG00000004637ENSMUST00000004756ENSMUST00000109107ENSMUST00000109108ENSMUST00000159870ENSMUST00000160005ENSMUST00000160205ENSMUST00000160862ENSMUST00000161753ENSMUST00000162052ENSMUSG00000008874ENSMUST00000009018ENSMUSG00000089723ENSMUST00000160544ENSMUSG00000089797ENSMUST00000161914ENSMUSG00000090217ENSMUST00000159472
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ID_0001ENSG00000260014ENST00000566307ENSG00000260733ENST00000563408ENSG00000260969ENST00000567099ENSG00000261837ENST00000568764ENSG00000276007ENST00000612986ENSG00000279129ENST00000624947ENST00000625162ENSG00000279887ENST00000623121ENSG00000279991ENST00000624577CIL_0008ID_0002ENSMUSG00000004637ENSMUST00000004756ENSMUST00000109108ENSMUST00000160005ENSMUST00000160862ENSMUST00000162052ENSMUSG00000008874ENSMUST00000009018ENSMUSG00000089723ENSMUST00000160544ENSMUSG00000089797ENSMUST00000161914ENSMUSG00000090217ENSMUST00000159472
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000260014 ENST00000566307 N/A N/A 0.313±0.00 N/A 0.194±0.03 N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 0.452±0.00
ENSG00000260733 ENST00000563408 N/A 0.123±0.00 N/A N/A 0.103±0.00 N/A N/A 0.291±0.13 0.706±0.00 N/A N/A N/A N/A 0.047±0.00
ENSG00000260969 ENST00000567099 N/A N/A 0.189±0.00 N/A N/A N/A N/A 0.073±0.00 0.032±0.00 N/A N/A 1.823±0.00 N/A 1.908±0.00
ENSG00000261837 ENST00000568764 0.056±0.00 0.345±0.00 N/A 0.120±0.00 0.350±0.27 0.393±0.00 0.103±0.00 N/A N/A 0.791±0.00 N/A N/A N/A 0.083±0.00
ENSG00000276007 ENST00000612986 0.325±0.00 0.975±0.00 0.374±0.00 1.394±0.35 0.391±0.31 0.598±0.45 0.109±0.07 0.536±0.00 1.000±0.87 0.388±0.13 0.112±0.00 0.846±0.42 0.141±0.11 1.346±0.56
ENSG00000279129 ENST00000624947 N/A N/A 0.469±0.00 N/A 0.276±0.01 0.326±0.00 0.061±0.00 0.182±0.00 0.210±0.00 0.122±0.00 0.025±0.00 0.064±0.04 0.064±0.00 0.102±0.00
ENST00000625162 0.081±0.00 0.282±0.00 0.470±0.00 0.176±0.00 0.265±0.00 0.326±0.00 0.066±0.00 0.158±0.02 0.125±0.08 0.098±0.02 0.051±0.00 0.085±0.05 0.065±0.00 0.135±0.01
ENSG00000279887 ENST00000623121 0.102±0.00 0.647±0.00 0.842±0.00 0.131±0.03 0.259±0.10 0.198±0.07 0.037±0.02 0.038±0.00 0.171±0.13 0.369±0.24 0.009±0.00 0.088±0.04 N/A 0.105±0.03
ENSG00000279991 ENST00000624577 N/A N/A 0.658±0.00 0.133±0.11 0.082±0.00 0.354±0.00 0.094±0.00 0.063±0.03 0.092±0.00 0.267±0.00 N/A 0.005±0.00 0.011±0.00 0.055±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004637 ENSMUST00000004756 4.897±1.21 6.061±5.19 3.146±0.05 2.591±0.50 3.734±1.38 3.387±1.43 1.025±0.25 7.261±1.56 1.391±0.33 4.627±1.38 1.196±0.09 6.961±2.38 1.301±0.64 6.228±0.24
ENSMUST00000109107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109108 N/A N/A N/A N/A 1.412±0.00 1.323±0.22 N/A 1.391±0.00 0.722±0.27 N/A N/A 2.471±0.39 0.623±0.07 N/A
ENSMUST00000159870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160005 0.781±0.13 N/A 0.644±0.03 0.673±0.00 0.945±0.32 1.321±0.00 0.461±0.04 N/A 0.511±0.12 1.122±0.21 0.754±0.09 2.087±0.65 0.498±0.22 2.669±0.13
ENSMUST00000160205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160862 1.204±0.03 N/A N/A N/A 1.731±0.75 N/A 0.734±0.30 1.866±0.00 0.940±0.35 1.173±0.00 N/A 2.594±0.23 N/A N/A
ENSMUST00000161753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162052 N/A 14.488±2.42 N/A 10.252±0.00 3.351±0.06 3.667±0.93 N/A 4.225±0.00 N/A N/A N/A 9.221±2.80 4.110±1.21 52.883±0.00
ENSMUSG00000008874 ENSMUST00000009018 N/A N/A N/A N/A N/A N/A 1.026±0.56 N/A N/A N/A 0.199±0.10 N/A 0.054±0.02 0.467±0.11
ENSMUSG00000089723 ENSMUST00000160544 0.288±0.00 N/A 0.156±0.11 N/A N/A N/A N/A N/A N/A N/A 0.194±0.08 N/A N/A N/A
ENSMUSG00000089797 ENSMUST00000161914 0.634±0.18 0.278±0.11 0.751±0.12 0.094±0.00 1.730±1.09 0.393±0.15 0.057±0.00 0.292±0.15 0.083±0.03 1.099±0.30 3.858±0.88 1.327±0.54 0.067±0.03 0.232±0.15
ENSMUSG00000090217 ENSMUST00000159472 0.231±0.08 0.161±0.00 0.355±0.00 N/A 0.346±0.09 0.192±0.00 0.154±0.06 0.108±0.01 0.451±0.23 0.242±0.08 N/A 0.514±0.27 0.171±0.07 0.165±0.06

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