C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008IT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs678 VISTA 9606 4:53795831-54396629
GeneTranscriptPositionBiotype
ENSG00000109220 (CHIC2)
cysteine-rich hydrophobic domain 2 		ENST00000263921 (CHIC2-001) 54009789-54064690 protein_coding
ENST00000509678 (CHIC2-004) 54048831-54064308 retained_intron
ENST00000510894 (CHIC2-005) 54009979-54064298 protein_coding
ENST00000512964 (CHIC2-003) 54009825-54064300 protein_coding
ENSG00000134853 (PDGFRA)
platelet-derived growth factor receptor, alpha polypeptide 		ENST00000257290 (PDGFRA-001) 54229097-54298247 protein_coding
ENST00000461294 (PDGFRA-005) 54276751-54278246 retained_intron
ENST00000503856 (PDGFRA-007) 54229843-54263776 protein_coding
ENST00000504461 (PDGFRA-006) 54230322-54263773 protein_coding
ENST00000507536 (PDGFRA-004) 54277176-54281977 retained_intron
ENST00000508170 (PDGFRA-002) 54229280-54265353 protein_coding
ENST00000509092 (PDGFRA-003) 54229292-54280758 retained_intron
ENST00000509490 (PDGFRA-008) 54229311-54281978 nonsense_mediated_decay
ENST00000512143 (PDGFRA-009) 54229293-54261412 protein_coding
ENST00000512522 (PDGFRA-010) 54243575-54263762 protein_coding
ENSG00000145216 (FIP1L1)
factor interacting with PAPOLA and CPSF1 		ENST00000306932 (FIP1L1-003) 53377696-53459621 protein_coding
ENST00000337488 (FIP1L1-001) 53377645-53459668 protein_coding
ENST00000358575 (FIP1L1-002) 53377645-53459668 protein_coding
ENST00000504094 (FIP1L1-010) 53428066-53460861 protein_coding
ENST00000505125 (FIP1L1-004) 53377803-53459621 retained_intron
ENST00000507166 (FIP1L1-005) 53377839-54295272 protein_coding
ENST00000507206 (FIP1L1-013) 53458551-53459402 retained_intron
ENST00000507922 (FIP1L1-009) 53377671-53428221 protein_coding
ENST00000510668 (FIP1L1-015) 53378218-53389849 processed_transcript
ENST00000511055 (FIP1L1-014) 53442253-53453131 retained_intron
ENST00000511376 (FIP1L1-012) 53377643-53390597 processed_transcript
ENST00000513008 (FIP1L1-008) 53425836-53459621 retained_intron
ENST00000513975 (FIP1L1-006) 53377843-53440983 retained_intron
ENST00000514543 (FIP1L1-011) 53382278-53459618 nonsense_mediated_decay
ENSG00000180613 (GSX2)
GS homeobox 2 		ENST00000326902 (GSX2-001) 54100031-54102505 protein_coding
ENST00000503800 (GSX2-002) 54100173-54102227 protein_coding
ENST00000507839 (GSX2-004) 54099523-54101928 processed_transcript
ENST00000548609 (GSX2-003) 54100816-54102146 processed_transcript
ENST00000611459 (GSX2-201) 54100031-54101955 protein_coding
ENSG00000229585 (RPL21P44)
ribosomal protein L21 pseudogene 44 		ENST00000491826 (RPL21P44-001) 53986587-53987058 processed_pseudogene
ENSG00000242670 (RP11-601I15.1)
 ENST00000493291 (RP11-601I15.1-001) 54221126-54221472 processed_pseudogene
ENSG00000248184 (RP11-231C18.1)
 ENST00000511634 (RP11-231C18.1-001) 54332892-54355954 lincRNA
ENSG00000248518 (RP11-231C18.2)
 ENST00000508241 (RP11-231C18.2-001) 54376002-54376752 lincRNA
ENSG00000249706 (RP11-89B16.1)
 ENST00000512405 (RP11-89B16.1-001) 53899871-53916835 sense_intronic
ENSG00000250147 (MORF4L2P1)
mortality factor 4 like 2 pseudogene 1 		ENST00000503761 (MORF4L2P1-001) 54086926-54087783 processed_pseudogene
ENSG00000250815 (RP11-89B16.2)
 ENST00000508433 (RP11-89B16.2-001) 53927499-53928138 processed_pseudogene
ENSG00000251105 (RP11-571I18.2)
 ENST00000510278 (RP11-571I18.2-001) 54076625-54076848 processed_pseudogene
ENSG00000269506 (RP11-571I18.5)
 ENST00000595906 (RP11-571I18.5-001) 54059597-54061210 antisense
ENSG00000272650 (RP11-571I18.4)
 ENST00000609843 (RP11-571I18.4-001) 53997415-53997712 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
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CIL_0008IT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs678 VISTA 10090 5:74771388-75372201
GeneTranscriptPositionBiotype
ENSMUSG00000029229 (Chic2)
cysteine-rich hydrophobic domain 2 		ENSMUST00000075452 (Chic2-001) 75001026-75044774 protein_coding
ENSMUST00000162397 (Chic2-002) 75011180-75011509 retained_intron
ENSMUSG00000029231 (Pdgfra)
platelet derived growth factor receptor, alpha polypeptide 		ENSMUST00000000476 (Pdgfra-201) 75152291-75198204 protein_coding
ENSMUST00000168162 (Pdgfra-202) 75156166-75198204 protein_coding
ENSMUSG00000035946 (Gsx2)
GS homeobox 2 		ENSMUST00000040477 (Gsx2-001) 75075601-75077893 protein_coding
ENSMUST00000160104 (Gsx2-002) 75075464-75077625 protein_coding
ENSMUSG00000072874 (Gm6116)
predicted gene 6116 		ENSMUST00000101121 (Gm6116-001) 74949194-74966368 lincRNA
ENSMUSG00000101430 (RP23-55P22.1)
predicted gene 28713 		ENSMUST00000187957 (RP23-55P22.1-001) 75223092-75247795 lincRNA
ENSMUSG00000101461 (RP23-149H20.1)
predicted gene 29465 		ENSMUST00000189090 (RP23-149H20.1-001) 75347388-75353252 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008IT_0001ENSG00000109220ENST00000263921ENST00000509678ENST00000510894ENST00000512964ENSG00000134853ENST00000257290ENST00000461294ENST00000503856ENST00000504461ENST00000507536ENST00000508170ENST00000509092ENST00000509490ENST00000512143ENST00000512522ENSG00000145216ENST00000306932ENST00000337488ENST00000358575ENST00000504094ENST00000505125ENST00000507166ENST00000507206ENST00000507922ENST00000510668ENST00000511055ENST00000511376ENST00000513008ENST00000513975ENST00000514543ENSG00000180613ENST00000326902ENST00000503800ENST00000507839ENST00000548609ENST00000611459ENSG00000229585ENST00000491826ENSG00000242670ENST00000493291ENSG00000248184ENST00000511634ENSG00000248518ENST00000508241ENSG00000249706ENST00000512405ENSG00000250147ENST00000503761ENSG00000250815ENST00000508433ENSG00000251105ENST00000510278ENSG00000269506ENST00000595906ENSG00000272650ENST00000609843CIL_0008IT_0002ENSMUSG00000029229ENSMUST00000075452ENSMUST00000162397ENSMUSG00000029231ENSMUST00000000476ENSMUST00000168162ENSMUSG00000035946ENSMUST00000040477ENSMUST00000160104ENSMUSG00000072874ENSMUST00000101121ENSMUSG00000101430ENSMUST00000187957ENSMUSG00000101461ENSMUST00000189090
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109220 ENST00000263921 4.275±0.00 5.917±0.00 1.141±0.00 1.166±0.00 3.135±0.70 3.049±1.68 1.730±0.61 2.759±0.02 2.911±0.83 7.238±0.00 1.574±0.96 5.525±0.21 12.574±7.19 22.235±4.23
ENST00000509678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510894 N/A N/A N/A N/A 2.169±0.00 2.283±0.00 N/A 3.371±0.00 1.490±0.00 6.782±0.00 N/A 3.078±1.01 2.146±0.00 10.830±0.00
ENST00000512964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134853 ENST00000257290 N/A N/A 10.959±0.00 5.721±1.62 8.378±0.00 12.411±4.75 4.723±1.61 4.446±0.00 22.616±0.00 13.010±8.31 1.719±0.49 26.966±8.20 12.258±4.37 5.769±0.00
ENST00000461294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.565±0.00 N/A N/A N/A
ENST00000509490 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.526±0.00 N/A N/A N/A N/A
ENST00000512143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145216 ENST00000306932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.805±0.00 12.019±0.00
ENST00000337488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.547±0.00
ENST00000358575 N/A N/A N/A 5.688±0.00 N/A N/A N/A 4.019±0.00 N/A N/A N/A N/A N/A N/A
ENST00000504094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.973±0.00 N/A N/A 29.238±0.00
ENST00000510668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180613 ENST00000326902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENST00000503800 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00
ENST00000507839 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A N/A
ENST00000548609 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A 0.277±0.00
ENST00000611459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229585 ENST00000491826 N/A 0.504±0.00 0.276±0.00 0.486±0.21 0.499±0.14 N/A 0.186±0.00 0.333±0.00 0.335±0.28 0.259±0.21 0.384±0.00 0.202±0.10 0.123±0.01 0.203±0.15
ENSG00000242670 ENST00000493291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00
ENSG00000248184 ENST00000511634 N/A N/A N/A 0.715±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248518 ENST00000508241 N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249706 ENST00000512405 0.034±0.00 0.035±0.00 N/A 0.092±0.00 0.036±0.00 0.131±0.00 0.078±0.00 0.282±0.00 N/A 0.185±0.14 0.075±0.00 0.097±0.05 0.104±0.03 0.036±0.00
ENSG00000250147 ENST00000503761 N/A 0.032±0.00 N/A 0.033±0.00 N/A 0.015±0.00 0.015±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSG00000250815 ENST00000508433 0.281±0.00 1.488±0.00 N/A 0.178±0.01 0.691±0.00 N/A N/A N/A 0.105±0.00 0.369±0.00 N/A 0.051±0.02 0.065±0.00 0.084±0.06
ENSG00000251105 ENST00000510278 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000269506 ENST00000595906 0.042±0.00 0.154±0.00 1.946±0.00 0.041±0.02 0.557±0.51 0.969±0.00 0.166±0.16 0.222±0.19 0.569±0.00 0.854±0.82 0.073±0.00 0.230±0.30 N/A N/A
ENSG00000272650 ENST00000609843 0.293±0.00 0.724±0.00 1.955±0.00 2.943±0.00 0.468±0.00 2.054±0.00 0.314±0.00 0.437±0.00 0.123±0.00 3.213±2.80 N/A 1.244±0.94 0.184±0.02 0.427±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029229 ENSMUST00000075452 1.596±0.27 6.665±2.65 1.956±0.10 2.557±1.48 3.792±2.21 5.718±0.68 0.906±0.08 1.292±0.11 1.615±0.48 5.030±1.39 0.853±0.04 5.682±2.32 2.175±0.71 3.217±0.97
ENSMUST00000162397 N/A N/A N/A 101.885±0.00 N/A N/A N/A N/A N/A N/A N/A 300.921±0.00 517.295±51.17 472.670±0.00
ENSMUSG00000029231 ENSMUST00000000476 14.493±8.57 2.368±0.54 11.856±0.15 3.545±1.83 12.888±3.02 10.392±1.15 4.050±1.63 8.427±1.47 0.671±0.17 40.581±4.81 0.775±0.36 9.388±3.83 7.136±4.99 1.432±0.48
ENSMUST00000168162 3.264±1.67 1.107±0.32 2.990±0.59 0.944±0.58 2.262±0.44 1.537±0.00 1.140±0.09 1.224±0.18 0.207±0.06 4.670±0.01 0.947±0.37 7.621±3.37 11.372±7.74 0.402±0.07
ENSMUSG00000035946 ENSMUST00000040477 N/A N/A N/A 1.260±0.90 N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.112±0.06 0.055±0.03 N/A
ENSMUST00000160104 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A 0.086±0.03 0.014±0.00 N/A
ENSMUSG00000072874 ENSMUST00000101121 N/A N/A 0.011±0.00 0.012±0.01 N/A N/A N/A N/A N/A 0.090±0.03 N/A N/A 0.101±0.07 N/A
ENSMUSG00000101430 ENSMUST00000187957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.222±0.18 N/A
ENSMUSG00000101461 ENSMUST00000189090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A

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