C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008JP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm412 VISTA 9606 7:26366881-26968405
GeneTranscriptPositionBiotype
ENSG00000005020 (SKAP2)
src kinase associated phosphoprotein 2 		ENST00000345317 (SKAP2-001) 26667062-26864743 protein_coding
ENST00000432747 (SKAP2-007) 26738840-26995239 protein_coding
ENST00000468712 (SKAP2-002) 26726682-26857678 retained_intron
ENST00000481204 (SKAP2-003) 26844029-26865113 processed_transcript
ENST00000487720 (SKAP2-006) 26844030-26864585 processed_transcript
ENST00000489977 (SKAP2-009) 26690307-26742475 processed_transcript
ENST00000490456 (SKAP2-004) 26739887-26858159 processed_transcript
ENST00000495802 (SKAP2-005) 26726889-26855151 processed_transcript
ENST00000497511 (SKAP2-008) 26746567-26864587 processed_transcript
ENSG00000086300 (SNX10)
sorting nexin 10 		ENST00000338523 (SNX10-002) 26291923-26374325 protein_coding
ENST00000396376 (SNX10-001) 26293054-26374329 protein_coding
ENST00000409367 (SNX10-007) 26354057-26372608 protein_coding
ENST00000409838 (SNX10-004) 26364325-26372944 protein_coding
ENST00000412416 (SNX10-006) 26292011-26361031 protein_coding
ENST00000416246 (SNX10-005) 26291921-26372022 protein_coding
ENST00000446848 (SNX10-201) 26291895-26374317 protein_coding
ENST00000462993 (SNX10-003) 26370388-26372746 processed_transcript
ENST00000619420 (SNX10-202) 26360454-26374327 protein_coding
ENSG00000122548 (KIAA0087)
KIAA0087 		ENST00000242109 (KIAA0087-201) 26535813-26538618 protein_coding
ENSG00000213787 (RPL7AP38)
ribosomal protein L7a pseudogene 38 		ENST00000441433 (RPL7AP38-001) 26922110-26922912 processed_pseudogene
ENSG00000214870 (AC004540.5)
 ENST00000420774 (AC004540.5-003) 26398652-26399654 lincRNA
ENST00000421862 (AC004540.5-004) 26398601-26494144 lincRNA
ENST00000430548 (AC004540.5-006) 26398601-26480022 lincRNA
ENST00000439120 (AC004540.5-001) 26398593-26494256 lincRNA
ENST00000448056 (AC004540.5-005) 26440259-26494114 lincRNA
ENST00000449537 (AC004540.5-002) 26398613-26399563 lincRNA
ENSG00000222004 (C7orf71)
chromosome 7 open reading frame 71 		ENST00000409974 (C7orf71-001) 26637871-26647270 lincRNA
ENST00000614528 (C7orf71-201) 26638457-26647305 protein_coding
ENSG00000233760 (AC004947.2)
 ENST00000420912 (AC004947.2-001) 26551822-26557200 lincRNA
ENST00000430426 (AC004947.2-002) 26551896-26555276 lincRNA
ENST00000457000 (AC004947.2-003) 26551839-26555114 lincRNA
ENSG00000280255 (RP5-1007F24.1)
 ENST00000623092 (RP5-1007F24.1-001) 26538378-26541048 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008JP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm412 VISTA 10090 6:51557235-52158614
GeneTranscriptPositionBiotype
ENSMUSG00000029844 (Hoxa1)
homeobox A1 		ENSMUST00000000964 (Hoxa1-001) 52155590-52158317 protein_coding
ENSMUST00000120363 (Hoxa1-002) 52155595-52158317 protein_coding
ENSMUSG00000038301 (Snx10)
sorting nexin 10 		ENSMUST00000049152 (Snx10-001) 51523901-51590679 protein_coding
ENSMUST00000114439 (Snx10-004) 51544524-51589072 protein_coding
ENSMUST00000137212 (Snx10-006) 51524285-51588436 protein_coding
ENSMUST00000140560 (Snx10-005) 51524260-51580377 protein_coding
ENSMUST00000149024 (Snx10-003) 51544566-51589043 nonsense_mediated_decay
ENSMUST00000155724 (Snx10-002) 51523982-51564088 retained_intron
ENSMUST00000179365 (Snx10-201) 51544523-51590670 protein_coding
ENSMUSG00000059182 (Skap2)
src family associated phosphoprotein 2 		ENSMUST00000078214 (Skap2-201) 51859166-52012549 protein_coding
ENSMUSG00000081979 (Rps8-ps3)
ribosomal protein S8, pseudogene 3 		ENSMUST00000121011 (Rps8-ps3-001) 52118242-52118891 processed_pseudogene
ENSMUSG00000085412 (Linchoxa1)
Hoxa adjacent long noncoding RNA 1 		ENSMUST00000125374 (Linchoxa1-001) 52102949-52112528 lincRNA
ENSMUST00000155758 (Linchoxa1-002) 52103003-52112188 lincRNA
ENSMUST00000189071 (Linchoxa1-003) 52102994-52113684 lincRNA
ENSMUSG00000087658 (Hotairm1)
Hoxa transcript antisense RNA, myeloid-specific 1 		ENSMUST00000129546 (Hotairm1-003) 52156902-52158528 antisense
ENSMUST00000132559 (Hotairm1-001) 52158432-52162119 antisense
ENSMUST00000159006 (Hotairm1-002) 52158524-52162020 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008JP_0001ENSG00000005020ENST00000345317ENST00000432747ENST00000468712ENST00000481204ENST00000487720ENST00000489977ENST00000490456ENST00000495802ENST00000497511ENSG00000086300ENST00000338523ENST00000396376ENST00000409367ENST00000409838ENST00000412416ENST00000416246ENST00000446848ENST00000462993ENST00000619420ENSG00000122548ENST00000242109ENSG00000213787ENST00000441433ENSG00000214870ENST00000420774ENST00000421862ENST00000430548ENST00000439120ENST00000448056ENST00000449537ENSG00000222004ENST00000409974ENST00000614528ENSG00000233760ENST00000420912ENST00000430426ENST00000457000ENSG00000280255ENST00000623092CIL_0008JP_0002ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000038301ENSMUST00000049152ENSMUST00000114439ENSMUST00000137212ENSMUST00000140560ENSMUST00000149024ENSMUST00000155724ENSMUST00000179365ENSMUSG00000059182ENSMUST00000078214ENSMUSG00000081979ENSMUST00000121011ENSMUSG00000085412ENSMUST00000125374ENSMUST00000155758ENSMUST00000189071ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008JP_0001ENSG00000005020ENST00000345317ENST00000489977ENST00000495802ENST00000497511ENSG00000086300ENST00000338523ENST00000396376ENST00000409367ENST00000409838ENST00000416246ENST00000446848ENST00000619420ENSG00000122548ENST00000242109ENSG00000213787ENST00000441433ENSG00000214870ENST00000420774ENST00000421862ENST00000439120ENST00000448056ENST00000449537ENSG00000222004ENST00000409974ENST00000614528ENSG00000233760ENST00000420912ENST00000430426ENST00000457000ENSG00000280255ENST00000623092CIL_0008JP_0002ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000038301ENSMUST00000049152ENSMUST00000114439ENSMUST00000137212ENSMUST00000140560ENSMUST00000149024ENSMUST00000155724ENSMUST00000179365ENSMUSG00000059182ENSMUST00000078214ENSMUSG00000081979ENSMUST00000121011ENSMUSG00000085412ENSMUST00000125374ENSMUST00000155758ENSMUST00000189071ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005020 ENST00000345317 7.090±0.00 5.800±0.00 N/A 4.821±0.88 6.913±2.22 6.140±2.97 1.402±0.00 4.154±3.53 3.128±2.78 9.749±0.96 4.660±0.00 3.838±1.55 2.704±0.72 7.515±0.44
ENST00000432747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489977 N/A N/A 5.305±0.00 N/A 5.571±0.00 N/A N/A N/A 9.235±0.00 N/A N/A 7.308±0.00 N/A 12.610±0.00
ENST00000490456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000497511 N/A N/A N/A N/A N/A N/A N/A 2.115±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000086300 ENST00000338523 3.347±0.00 2.101±0.00 N/A 9.684±1.54 3.946±2.51 0.617±0.00 0.280±0.00 5.024±3.99 5.653±0.00 1.574±0.00 N/A 0.633±0.38 2.493±1.25 0.835±0.00
ENST00000396376 N/A N/A 1.040±0.00 2.266±0.00 N/A N/A N/A 1.988±0.00 1.119±0.00 N/A N/A 0.112±0.00 N/A N/A
ENST00000409367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00 2.603±0.00 4.473±0.00 1.919±0.00
ENST00000409838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A
ENST00000412416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416246 N/A N/A N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A 3.680±0.00 3.399±0.00 1.628±0.00
ENST00000446848 N/A N/A N/A N/A 8.249±0.00 N/A 0.240±0.00 11.334±0.00 N/A 3.235±0.00 N/A N/A 0.780±0.00 N/A
ENST00000462993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619420 1.374±0.00 2.531±0.00 N/A 9.752±3.98 4.123±0.00 0.500±0.00 0.220±0.07 8.148±0.00 0.249±0.00 N/A 0.164±0.00 0.634±0.38 0.814±0.00 2.992±0.00
ENSG00000122548 ENST00000242109 N/A N/A 0.125±0.00 N/A 0.025±0.00 N/A N/A 0.108±0.00 N/A 0.237±0.00 N/A 0.018±0.00 N/A N/A
ENSG00000213787 ENST00000441433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSG00000214870 ENST00000420774 0.656±0.00 1.079±0.00 N/A 0.204±0.00 1.098±0.00 N/A N/A 1.310±0.00 N/A N/A 0.241±0.00 0.281±0.00 0.739±0.37 1.023±0.17
ENST00000421862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A 0.368±0.00
ENST00000430548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439120 0.736±0.00 2.167±0.00 0.308±0.00 2.083±0.00 2.308±1.57 0.504±0.00 0.238±0.00 2.316±0.00 N/A 0.704±0.00 0.405±0.25 0.963±0.00 0.636±0.16 1.062±0.18
ENST00000448056 N/A N/A N/A N/A 0.640±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.00
ENST00000449537 N/A 1.164±0.00 N/A 0.744±0.00 1.101±0.00 N/A N/A N/A 0.127±0.00 0.637±0.00 N/A N/A 0.730±0.19 N/A
ENSG00000222004 ENST00000409974 0.028±0.00 0.050±0.00 N/A N/A 0.119±0.00 0.038±0.00 0.098±0.00 0.032±0.02 0.056±0.00 0.050±0.00 N/A 0.014±0.00 0.022±0.00 0.643±0.00
ENST00000614528 N/A N/A 0.057±0.00 N/A 0.070±0.00 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A 0.393±0.06
ENSG00000233760 ENST00000420912 0.033±0.00 0.069±0.00 N/A 0.004±0.00 0.113±0.00 N/A 0.009±0.00 N/A 0.112±0.00 N/A N/A 0.070±0.00 0.053±0.02 0.034±0.00
ENST00000430426 0.098±0.00 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457000 N/A N/A N/A N/A 0.506±0.00 0.118±0.01 0.015±0.00 0.153±0.00 N/A 0.394±0.26 N/A N/A 0.110±0.00 0.303±0.09
ENSG00000280255 ENST00000623092 0.030±0.00 0.169±0.00 0.077±0.00 0.487±0.00 0.110±0.00 0.066±0.00 N/A 0.197±0.00 0.006±0.00 0.081±0.00 N/A 0.062±0.03 0.145±0.09 0.049±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029844 ENSMUST00000000964 0.348±0.16 0.318±0.00 0.200±0.01 0.239±0.12 0.643±0.19 0.209±0.05 0.105±0.05 0.457±0.12 0.154±0.05 0.818±0.10 N/A 0.293±0.08 0.830±0.53 N/A
ENSMUST00000120363 0.252±0.09 N/A 0.176±0.01 N/A 0.763±0.48 0.259±0.00 0.069±0.03 0.230±0.04 0.137±0.13 N/A 0.092±0.03 0.310±0.13 0.361±0.28 0.043±0.02
ENSMUSG00000038301 ENSMUST00000049152 1.985±0.58 0.725±0.36 3.252±0.73 7.120±0.32 1.449±0.46 0.282±0.12 0.894±0.24 0.820±0.27 1.647±0.84 1.830±0.49 2.550±1.13 1.037±0.66 5.530±2.03 N/A
ENSMUST00000114439 2.341±0.00 N/A N/A N/A 1.848±0.45 N/A 0.566±0.00 0.954±0.19 N/A 1.391±0.00 N/A 0.972±0.20 N/A 0.190±0.00
ENSMUST00000137212 4.143±0.46 0.740±0.36 N/A N/A 3.690±1.34 0.741±0.55 0.860±0.11 0.863±0.17 1.850±0.22 1.069±0.25 N/A 0.916±0.50 N/A N/A
ENSMUST00000140560 N/A N/A N/A 22.620±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.744±0.00
ENSMUST00000149024 N/A 0.457±0.00 N/A 24.131±0.00 N/A N/A N/A N/A N/A N/A N/A 4.367±2.98 21.929±9.21 0.636±0.00
ENSMUST00000155724 0.562±0.00 0.182±0.09 N/A N/A 0.486±0.08 N/A N/A 0.106±0.00 0.444±0.01 0.439±0.12 N/A 0.439±0.21 N/A N/A
ENSMUST00000179365 4.063±0.62 0.814±0.38 2.054±0.73 N/A 3.783±1.33 1.079±0.34 0.740±0.36 0.395±0.13 2.786±2.65 0.601±0.05 1.667±1.09 2.385±1.60 5.538±2.70 0.908±0.00
ENSMUSG00000059182 ENSMUST00000078214 7.618±0.74 5.855±2.44 9.933±1.16 2.847±0.81 5.197±2.07 7.116±0.82 2.158±0.44 8.499±1.08 8.374±5.01 12.553±2.47 1.164±0.24 6.338±3.88 12.076±1.92 10.620±3.89
ENSMUSG00000081979 ENSMUST00000121011 N/A N/A N/A N/A 0.119±0.00 N/A N/A 0.203±0.09 N/A N/A 0.099±0.05 N/A N/A N/A
ENSMUSG00000085412 ENSMUST00000125374 N/A N/A N/A 0.074±0.00 0.219±0.02 N/A N/A N/A 0.076±0.00 0.403±0.00 0.340±0.26 0.357±0.14 0.163±0.08 N/A
ENSMUST00000155758 N/A N/A N/A N/A N/A N/A N/A 1.310±0.00 0.070±0.00 N/A 0.253±0.09 N/A 0.138±0.08 N/A
ENSMUST00000189071 0.793±0.62 N/A 0.052±0.03 0.490±0.00 0.289±0.12 0.190±0.00 0.407±0.17 3.154±0.43 0.076±0.02 0.212±0.11 0.316±0.08 0.199±0.00 0.128±0.01 0.091±0.00
ENSMUSG00000087658 ENSMUST00000129546 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A 0.148±0.00
ENSMUST00000132559 0.957±0.00 3.147±1.54 0.443±0.02 0.219±0.14 N/A 0.231±0.00 0.127±0.05 1.672±0.43 0.243±0.12 0.877±0.00 0.155±0.05 0.881±0.26 1.076±0.61 0.158±0.09
ENSMUST00000159006 11.192±0.00 11.973±0.00 N/A 4.641±0.00 N/A N/A 1.063±0.00 9.798±1.47 0.500±0.23 13.486±0.00 1.870±0.93 10.230±0.00 31.593±18.29 1.313±1.45

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