C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008JV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs242 VISTA 9606 2:172949643-173551205
GeneTranscriptPositionBiotype
ENSG00000091428 (RAPGEF4)
Rap guanine nucleotide exchange factor (GEF) 4 		ENST00000397081 (RAPGEF4-001) 172735841-173052887 protein_coding
ENST00000397085 (RAPGEF4-003) 173026626-173036795 protein_coding
ENST00000397087 (RAPGEF4-004) 172821575-173052893 protein_coding
ENST00000409036 (RAPGEF4-011) 172735967-173052893 protein_coding
ENST00000459852 (RAPGEF4-008) 172967109-172988273 processed_transcript
ENST00000464976 (RAPGEF4-009) 172744138-172814740 processed_transcript
ENST00000466030 (RAPGEF4-006) 172928152-172967397 processed_transcript
ENST00000473003 (RAPGEF4-013) 172860038-172965638 processed_transcript
ENST00000473043 (RAPGEF4-010) 172889801-172990925 processed_transcript
ENST00000473182 (RAPGEF4-007) 172965141-172967316 retained_intron
ENST00000484331 (RAPGEF4-012) 172735274-172917837 processed_transcript
ENST00000484645 (RAPGEF4-002) 173048128-173051954 retained_intron
ENST00000535187 (RAPGEF4-201) 172928205-173052887 protein_coding
ENST00000538974 (RAPGEF4-202) 172860038-173052887 protein_coding
ENST00000540783 (RAPGEF4-203) 172860038-173052887 protein_coding
ENSG00000091436 (ZAK)
Mitogen-activated protein kinase kinase kinase MLT 		ENST00000338983 (ZAK-002) 173075842-173227146 protein_coding
ENST00000375213 (ZAK-001) 173075959-173268010 protein_coding
ENST00000409176 (ZAK-003) 173075714-173266783 protein_coding
ENST00000422149 (ZAK-006) 173090619-173187623 protein_coding
ENST00000468408 (ZAK-005) 173075836-173191172 processed_transcript
ENST00000476618 (ZAK-004) 173075868-173212825 retained_intron
ENST00000480606 (ZAK-007) 173160010-173191177 processed_transcript
ENST00000539448 (ZAK-201) 173075435-173222204 protein_coding
ENSG00000144354 (CDCA7)
cell division cycle associated 7 		ENST00000306721 (CDCA7-001) 173354861-173368997 protein_coding
ENST00000347703 (CDCA7-002) 173354820-173368904 protein_coding
ENST00000410019 (CDCA7-004) 173354872-173368070 protein_coding
ENST00000410101 (CDCA7-003) 173354872-173367720 protein_coding
ENST00000435616 (CDCA7-007) 173354888-173364873 nonsense_mediated_decay
ENST00000467411 (CDCA7-006) 173354893-173368904 retained_intron
ENST00000468359 (CDCA7-008) 173358507-173365516 retained_intron
ENST00000496441 (CDCA7-005) 173354872-173368500 retained_intron
ENSG00000213148 (AC073465.1)
 ENST00000456671 (AC073465.1-001) 173431349-173431812 processed_pseudogene
ENSG00000226131 (AC073465.3)
 ENST00000440938 (AC073465.3-001) 173485865-173486362 processed_pseudogene
ENSG00000231735 (RP11-1O7.1)
 ENST00000433054 (RP11-1O7.1-001) 173297629-173298512 processed_pseudogene
ENSG00000236391 (AC092573.2)
 ENST00000434546 (AC092573.2-001) 173338219-173338461 transcribed_processed_pseudogene
ENST00000437243 (AC092573.2-002) 173338340-173356208 processed_transcript
CIL_0008JV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs242 VISTA 10090 2:72126155-72727698
GeneTranscriptPositionBiotype
ENSMUSG00000004085 (Zak)
sterile alpha motif and leucine zipper containing kinase AZK 		ENSMUST00000090824 (Zak-001) 72285637-72442610 protein_coding
ENSMUST00000112073 (Zak-003) 72285764-72399237 retained_intron
ENSMUST00000135204 (Zak-005) 72285794-72364843 retained_intron
ENSMUST00000135469 (Zak-002) 72285728-72407502 protein_coding
ENSMUST00000144111 (Zak-006) 72297901-72355622 protein_coding
ENSMUST00000150126 (Zak-004) 72285777-72389839 retained_intron
ENSMUSG00000049044 (Rapgef4)
Rap guanine nucleotide exchange factor (GEF) 4 		ENSMUST00000028525 (Rapgef4-005) 72054604-72257472 protein_coding
ENSMUST00000090826 (Rapgef4-001) 71981240-72257474 protein_coding
ENSMUST00000102698 (Rapgef4-003) 71981287-72256376 protein_coding
ENSMUST00000122975 (Rapgef4-009) 72140711-72196261 processed_transcript
ENSMUST00000124004 (Rapgef4-008) 72054985-72141477 processed_transcript
ENSMUST00000146970 (Rapgef4-011) 72242294-72256655 processed_transcript
ENSMUST00000149421 (Rapgef4-007) 71981247-72034405 processed_transcript
ENSMUST00000150234 (Rapgef4-002) 71981259-72141301 processed_transcript
ENSMUST00000151236 (Rapgef4-004) 72140728-72163386 processed_transcript
ENSMUST00000153887 (Rapgef4-006) 72179693-72257472 processed_transcript
ENSMUST00000156031 (Rapgef4-010) 72198799-72208437 processed_transcript
ENSMUSG00000055612 (Cdca7)
cell division cycle associated 7 		ENSMUST00000102691 (Cdca7-001) 72476159-72486893 protein_coding
ENSMUST00000127344 (Cdca7-004) 72476390-72481860 processed_transcript
ENSMUST00000130730 (Cdca7-002) 72483564-72484743 processed_transcript
ENSMUST00000137880 (Cdca7-003) 72485107-72486202 processed_transcript
ENSMUST00000157019 (Cdca7-005) 72476253-72482497 protein_coding
ENSMUSG00000081957 (Ak3l2-ps)
adenylate kinase 3-like 2, pseudogene 		ENSMUST00000120282 (Ak3l2-ps-001) 72633936-72634607 processed_pseudogene
ENSMUSG00000083279 (Pex13-ps)
peroxisomal biogenesis factor 13, pseudogene 		ENSMUST00000118184 (Pex13-ps-001) 72632270-72633426 processed_pseudogene
ENSMUSG00000084261 (Rpl36a-ps4)
ribosomal protein L36A, pseudogene 4 		ENSMUST00000121019 (Rpl36a-ps4-001) 72360247-72360542 processed_pseudogene
ENSMUSG00000085001 (Rapgef4os2)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 		ENSMUST00000128165 (Rapgef4os2-001) 72224688-72232302 antisense
ENSMUSG00000085252 (8430437L04Rik)
RIKEN cDNA 8430437L04 gene 		ENSMUST00000124829 (8430437L04Rik-001) 72703510-72729468 lincRNA
ENSMUSG00000085439 (Rapgef4os1)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1 		ENSMUST00000126462 (Rapgef4os1-001) 72097603-72148796 antisense
ENSMUSG00000086231 (Rapgef4os3)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3 		ENSMUST00000132792 (Rapgef4os3-001) 72244965-72248975 antisense
ENSMUSG00000088302 (Zakit)
sterile alpha motif and leucine zipper containing kinase AZK, intronic transcript 		ENSMUST00000157677 (Zakit-201) 72327687-72327994 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008JV_0001ENSG00000091428ENST00000397081ENST00000397085ENST00000397087ENST00000409036ENST00000466030ENST00000484645ENST00000535187ENST00000540783ENSG00000091436ENST00000338983ENST00000375213ENST00000409176ENSG00000144354ENST00000306721ENST00000347703ENST00000410019ENST00000410101ENST00000435616ENST00000467411ENST00000496441ENSG00000213148ENST00000456671ENSG00000226131ENST00000440938ENSG00000231735ENST00000433054ENSG00000236391ENST00000434546ENST00000437243CIL_0008JV_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091428 ENST00000397081 0.352±0.00 0.690±0.00 N/A 21.403±15.04 0.847±0.00 0.437±0.00 0.804±0.00 N/A N/A N/A N/A 1.449±0.69 N/A N/A
ENST00000397085 N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A N/A N/A
ENST00000397087 1.216±0.00 0.876±0.00 N/A N/A 0.841±0.00 0.363±0.00 0.140±0.00 0.896±0.00 0.200±0.00 4.589±2.97 0.252±0.00 1.549±0.73 0.222±0.12 0.460±0.00
ENST00000409036 N/A N/A N/A N/A N/A N/A 0.392±0.11 N/A N/A N/A N/A 3.815±0.00 N/A N/A
ENST00000459852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.771±0.00 N/A N/A
ENST00000473003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.519±0.00 N/A N/A N/A
ENST00000535187 N/A 1.490±0.00 N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A N/A 0.910±0.02 0.182±0.00 0.590±0.13
ENST00000538974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 0.240±0.04 N/A
ENSG00000091436 ENST00000338983 5.075±0.00 N/A 0.647±0.00 1.474±0.40 14.060±1.91 6.803±0.00 47.438±37.17 1.917±0.68 22.982±0.00 10.472±4.63 55.412±43.94 7.726±4.18 4.941±1.40 3.165±0.00
ENST00000375213 N/A N/A N/A N/A N/A N/A N/A 1.120±0.19 2.373±0.00 N/A N/A N/A 2.403±0.40 N/A
ENST00000409176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.948±0.00 5.214±0.00 N/A
ENST00000422149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144354 ENST00000306721 N/A N/A N/A 0.025±0.00 0.119±0.00 1.917±0.00 N/A N/A N/A N/A 0.416±0.30 3.888±3.67 0.576±0.05 1.222±0.69
ENST00000347703 0.294±0.00 0.502±0.00 N/A 0.280±0.00 0.477±0.00 0.559±0.00 N/A 0.162±0.00 0.012±0.00 0.374±0.00 N/A 14.138±7.11 2.083±1.19 3.222±0.00
ENST00000410019 0.337±0.00 N/A N/A N/A N/A N/A 0.220±0.11 0.079±0.00 N/A 0.292±0.05 0.760±0.00 0.250±0.00 N/A 2.470±0.00
ENST00000410101 N/A 0.803±0.00 N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 0.565±0.00 40.278±0.00 3.354±0.00 2.446±0.00
ENST00000435616 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467411 N/A 0.201±0.00 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496441 N/A N/A N/A N/A N/A N/A 0.066±0.03 N/A N/A N/A N/A 6.799±0.00 N/A N/A
ENSG00000213148 ENST00000456671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.02
ENSG00000226131 ENST00000440938 0.029±0.00 0.090±0.00 N/A 0.063±0.00 0.030±0.00 N/A 0.027±0.00 0.148±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000231735 ENST00000433054 0.043±0.00 0.114±0.00 N/A N/A 0.025±0.00 0.066±0.00 0.021±0.00 0.070±0.00 0.040±0.00 0.022±0.00 0.116±0.00 0.029±0.00 N/A N/A
ENSG00000236391 ENST00000434546 N/A N/A N/A N/A 0.062±0.00 N/A 0.057±0.00 0.062±0.00 N/A N/A N/A N/A 0.162±0.00 0.112±0.00
ENST00000437243 N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004085 ENSMUST00000090824 N/A 1.368±0.43 N/A 0.534±0.13 1.572±0.00 1.887±0.11 N/A 1.650±0.03 2.166±0.53 4.175±0.45 N/A 2.415±0.59 0.518±0.11 N/A
ENSMUST00000112073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135469 17.994±2.20 4.057±0.56 26.758±4.13 0.931±0.55 10.599±6.87 8.063±1.40 33.700±7.18 2.292±0.94 2.034±0.63 18.310±1.65 18.624±4.00 9.844±3.95 0.859±0.78 1.382±0.55
ENSMUST00000144111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049044 ENSMUST00000028525 0.730±0.16 24.666±10.92 N/A 1.183±0.46 0.824±0.17 0.477±0.13 1.104±0.19 2.248±0.15 N/A 3.649±0.72 0.088±0.03 3.088±1.99 0.701±0.64 0.465±0.00
ENSMUST00000090826 0.687±0.14 6.776±0.00 N/A 3.918±0.79 N/A 0.149±0.00 1.845±0.34 N/A 0.368±0.04 0.626±0.00 N/A 1.420±0.32 0.169±0.08 0.372±0.00
ENSMUST00000102698 N/A N/A N/A 91.311±0.00 N/A N/A N/A N/A N/A N/A 0.147±0.00 4.271±0.00 N/A 0.895±0.00
ENSMUST00000122975 N/A N/A N/A 151.078±0.00 N/A N/A N/A N/A N/A N/A N/A 14.833±0.00 N/A N/A
ENSMUST00000124004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146970 N/A 122.478±30.31 N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.237±0.00 N/A N/A
ENSMUST00000149421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153887 N/A 13.479±1.77 N/A 16.229±15.33 N/A N/A N/A N/A 15.688±12.78 N/A 0.331±0.08 5.242±3.69 0.315±0.00 0.656±0.19
ENSMUST00000156031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055612 ENSMUST00000102691 4.567±4.21 0.424±0.22 7.128±0.38 12.493±10.41 1.629±0.51 5.537±2.81 0.362±0.17 0.317±0.08 11.748±12.22 1.489±0.26 0.150±0.09 5.939±2.70 12.009±6.35 1.574±0.38
ENSMUST00000127344 N/A 0.211±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130730 N/A N/A N/A 2.086±0.00 N/A N/A N/A 0.404±0.00 N/A N/A 0.077±0.00 13.484±0.00 21.400±0.00 N/A
ENSMUST00000137880 5.997±5.31 0.461±0.25 4.874±0.77 7.603±5.42 3.155±2.30 5.410±1.10 0.637±0.18 0.627±0.18 7.319±7.35 2.240±0.59 0.102±0.00 6.738±2.69 12.457±8.61 1.439±0.40
ENSMUST00000157019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081957 ENSMUST00000120282 0.169±0.10 0.198±0.07 0.051±0.01 0.089±0.03 0.400±0.23 0.298±0.16 0.411±0.20 3.744±0.40 0.488±0.24 0.338±0.18 N/A 0.761±0.63 0.207±0.09 0.189±0.11
ENSMUSG00000083279 ENSMUST00000118184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.02 0.058±0.01
ENSMUSG00000084261 ENSMUST00000121019 0.572±0.00 N/A 0.241±0.00 N/A N/A N/A N/A N/A 0.065±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000085001 ENSMUST00000128165 N/A N/A 8.000±0.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085252 ENSMUST00000124829 N/A N/A N/A N/A N/A N/A 0.028±0.01 N/A 0.011±0.00 N/A N/A N/A 0.016±0.01 N/A
ENSMUSG00000085439 ENSMUST00000126462 N/A 0.256±0.00 N/A 0.932±1.15 0.259±0.07 N/A 0.195±0.00 0.111±0.04 0.171±0.12 0.132±0.00 0.150±0.04 1.725±1.26 0.495±0.49 0.182±0.04
ENSMUSG00000086231 ENSMUST00000132792 0.227±0.13 0.754±0.03 0.057±0.01 0.260±0.17 0.312±0.20 0.070±0.02 0.096±0.02 0.088±0.03 0.343±0.21 N/A 0.049±0.01 0.697±0.28 0.068±0.04 0.194±0.10
ENSMUSG00000088302 ENSMUST00000157677 0.268±0.00 N/A 0.290±0.00 0.117±0.00 N/A N/A 0.233±0.00 N/A 0.100±0.00 0.329±0.05 N/A 0.306±0.00 0.077±0.00 N/A

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