C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008KU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1823 VISTA 9606 8:6228238-6829442
GeneTranscriptPositionBiotype
ENSG00000091879 (ANGPT2)
angiopoietin 2 		ENST00000325203 (ANGPT2-001) 6499651-6563409 protein_coding
ENST00000338312 (ANGPT2-002) 6503080-6563044 protein_coding
ENST00000523120 (ANGPT2-003) 6507564-6563245 protein_coding
ENSG00000147316 (MCPH1)
microcephalin 1 		ENST00000344683 (MCPH1-001) 6406592-6643623 protein_coding
ENST00000519221 (MCPH1-007) 6477266-6621671 processed_transcript
ENST00000519480 (MCPH1-002) 6406596-6446567 protein_coding
ENST00000521129 (MCPH1-004) 6477359-6621621 processed_transcript
ENST00000521175 (MCPH1-005) 6621452-6643370 processed_transcript
ENST00000522020 (MCPH1-006) 6455202-6494542 processed_transcript
ENST00000522905 (MCPH1-003) 6406643-6445890 protein_coding
ENSG00000155189 (AGPAT5)
1-acylglycerol-3-phosphate O-acyltransferase 5 		ENST00000285518 (AGPAT5-001) 6708357-6759666 protein_coding
ENST00000518327 (AGPAT5-003) 6708693-6757695 protein_coding
ENST00000523234 (AGPAT5-002) 6708666-6758885 nonsense_mediated_decay
ENST00000523586 (AGPAT5-004) 6708860-6730743 nonsense_mediated_decay
ENST00000530716 (AGPAT5-006) 6738376-6757186 processed_transcript
ENST00000533159 (AGPAT5-007) 6747684-6757505 processed_transcript
ENST00000533648 (AGPAT5-005) 6745755-6747742 processed_transcript
ENSG00000253550 (RP11-115C21.4)
 ENST00000514530 (RP11-115C21.4-001) 6473845-6474288 processed_pseudogene
ENSG00000253880 (RP11-124B13.1)
 ENST00000519555 (RP11-124B13.1-001) 6044353-6257537 lincRNA
ENSG00000266038 (MIR4659A)
microRNA 4659a 		ENST00000580269 (MIR4659A-201) 6745164-6745244 miRNA
ENSG00000271743 (CTD-2541M15.3)
 ENST00000607368 (CTD-2541M15.3-001) 6615604-6617198 lincRNA
ENSG00000275591 (XKR5)
XK, Kell blood group complex subunit-related family, member 5 		ENST00000618742 (XKR5-001) 6808517-6835644 protein_coding
ENST00000618990 (XKR5-002) 6808517-6835498 nonsense_mediated_decay
ENSG00000276580 (MIR8055)
microRNA 8055 		ENST00000610739 (MIR8055-201) 6622124-6622220 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008KU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1823 VISTA 10090 8:18411246-19012747
GeneTranscriptPositionBiotype
ENSMUSG00000031465 (Angpt2)
angiopoietin 2 		ENSMUST00000033846 (Angpt2-001) 18690263-18741562 protein_coding
ENSMUST00000170200 (Angpt2-002) 18692087-18699547 processed_transcript
ENSMUSG00000031467 (Agpat5)
1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) 		ENSMUST00000033847 (Agpat5-002) 18846279-18883421 protein_coding
ENSMUST00000149565 (Agpat5-001) 18846277-18891361 protein_coding
ENSMUSG00000039814 (Xkr5)
X Kell blood group precursor-related family, member 5 		ENSMUST00000055503 (Xkr5-201) 18932729-18950973 protein_coding
ENSMUST00000095438 (Xkr5-001) 18932729-18950975 protein_coding
ENSMUST00000143913 (Xkr5-004) 18933088-18950937 nonsense_mediated_decay
ENSMUST00000144987 (Xkr5-003) 18932729-18950871 processed_transcript
ENSMUST00000152974 (Xkr5-002) 18932732-18950916 nonsense_mediated_decay
ENSMUSG00000039842 (Mcph1)
microcephaly, primary autosomal recessive 1 		ENSMUST00000039412 (Mcph1-001) 18595131-18803189 protein_coding
ENSMUST00000124910 (Mcph1-002) 18595164-18712939 nonsense_mediated_decay
ENSMUST00000133417 (Mcph1-005) 18625563-18631880 protein_coding
ENSMUST00000141244 (Mcph1-006) 18632592-18652990 protein_coding
ENSMUST00000146819 (Mcph1-004) 18595582-18632901 protein_coding
ENSMUST00000153133 (Mcph1-003) 18595576-18689953 retained_intron
ENSMUSG00000053678 (Defb40)
defensin beta 40 		ENSMUST00000066258 (Defb40-001) 18974940-18978256 protein_coding
ENSMUSG00000053695 (Defb37)
defensin beta 37 		ENSMUST00000066282 (Defb37-001) 18986233-18991055 protein_coding
ENSMUSG00000090334 (Gm17149)
predicted gene 17149 		ENSMUST00000164712 (Gm17149-001) 18656615-18656989 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KU_0001ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519221ENST00000519480ENST00000521129ENST00000521175ENST00000522020ENST00000522905ENSG00000155189ENST00000285518ENST00000518327ENST00000523234ENST00000523586ENST00000530716ENST00000533159ENST00000533648ENSG00000253550ENST00000514530ENSG00000253880ENST00000519555ENSG00000266038ENST00000580269ENSG00000271743ENST00000607368ENSG00000275591ENST00000618742ENST00000618990ENSG00000276580ENST00000610739CIL_0008KU_0002ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000031467ENSMUST00000033847ENSMUST00000149565ENSMUSG00000039814ENSMUST00000055503ENSMUST00000095438ENSMUST00000143913ENSMUST00000144987ENSMUST00000152974ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000133417ENSMUST00000141244ENSMUST00000146819ENSMUST00000153133ENSMUSG00000053678ENSMUST00000066258ENSMUSG00000053695ENSMUST00000066282ENSMUSG00000090334ENSMUST00000164712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KU_0001ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519480ENST00000522905ENSG00000155189ENST00000285518ENST00000518327ENST00000523234ENST00000530716ENSG00000253550ENST00000514530ENSG00000253880ENST00000519555ENSG00000266038ENST00000580269ENSG00000271743ENST00000607368ENSG00000275591ENST00000618742ENSG00000276580ENST00000610739CIL_0008KU_0002ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000031467ENSMUST00000033847ENSMUST00000149565ENSMUSG00000039814ENSMUST00000055503ENSMUST00000095438ENSMUST00000143913ENSMUST00000144987ENSMUST00000152974ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000146819ENSMUST00000153133ENSMUSG00000053678ENSMUST00000066258ENSMUSG00000053695ENSMUST00000066282ENSMUSG00000090334ENSMUST00000164712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091879 ENST00000325203 N/A N/A 0.284±0.00 0.474±0.00 1.038±0.00 0.420±0.00 0.376±0.00 0.552±0.00 0.894±0.65 1.337±0.00 N/A 0.693±0.00 1.254±0.00 N/A
ENST00000338312 8.363±0.00 5.688±0.00 N/A N/A 3.169±0.00 12.431±0.00 N/A N/A N/A 3.247±0.00 N/A 2.359±0.00 3.255±0.98 N/A
ENST00000523120 N/A N/A N/A N/A 1.118±0.00 N/A N/A 0.376±0.00 1.086±0.00 N/A N/A 1.261±0.00 N/A N/A
ENSG00000147316 ENST00000344683 2.835±0.00 3.677±0.00 0.522±0.00 1.334±0.65 1.070±0.00 1.281±0.00 2.111±0.00 2.009±0.00 0.997±0.00 1.742±0.00 4.341±0.00 1.666±0.28 2.034±0.35 4.123±0.43
ENST00000519221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519480 N/A N/A N/A 0.711±0.00 1.197±0.00 1.021±0.00 0.824±0.00 1.175±0.38 0.998±0.37 N/A N/A 1.683±0.23 1.647±0.00 N/A
ENST00000521129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522905 N/A N/A 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A 3.106±0.00
ENSG00000155189 ENST00000285518 2.996±0.00 3.096±0.00 0.564±0.00 7.654±0.00 1.125±0.13 2.974±0.16 0.550±0.45 4.772±2.97 2.025±1.00 1.976±0.00 3.017±0.00 3.409±0.84 3.955±1.06 14.472±3.65
ENST00000518327 N/A N/A N/A N/A N/A 4.716±0.00 N/A N/A 1.672±0.00 N/A 1.836±0.00 10.862±0.00 6.735±0.00 26.528±17.05
ENST00000523234 N/A N/A 3.220±0.00 8.044±0.00 3.182±0.00 1.939±0.00 0.290±0.07 4.660±0.00 0.547±0.00 1.941±0.00 0.350±0.00 3.575±0.44 1.781±0.00 12.472±0.00
ENST00000523586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.176±0.00 73.779±0.00
ENST00000533159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253550 ENST00000514530 0.092±0.00 N/A 2.851±0.00 N/A 0.462±0.44 1.219±0.00 0.054±0.01 N/A 0.381±0.00 N/A N/A 0.038±0.00 0.079±0.04 0.156±0.00
ENSG00000253880 ENST00000519555 0.180±0.00 0.222±0.00 N/A 0.105±0.00 0.089±0.02 0.090±0.00 0.149±0.00 0.260±0.00 N/A 0.243±0.00 0.361±0.00 0.195±0.04 N/A 1.370±1.08
ENSG00000266038 ENST00000580269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.909±0.00
ENSG00000271743 ENST00000607368 0.040±0.00 0.169±0.00 0.123±0.00 0.582±0.13 0.049±0.01 0.083±0.02 0.073±0.04 0.051±0.03 0.156±0.00 N/A N/A 0.333±0.16 0.097±0.03 0.274±0.11
ENSG00000275591 ENST00000618742 0.019±0.00 0.083±0.00 N/A 0.029±0.00 0.032±0.00 0.041±0.03 0.024±0.00 0.089±0.04 0.006±0.00 0.025±0.02 0.032±0.00 0.046±0.03 0.086±0.01 0.199±0.00
ENST00000618990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276580 ENST00000610739 0.918±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.050±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031465 ENSMUST00000033846 3.675±0.97 0.989±0.37 3.302±0.68 1.318±0.45 3.780±0.89 0.774±0.19 1.097±0.14 7.186±0.43 0.338±0.21 5.133±1.24 0.551±0.08 5.497±0.90 7.819±3.67 0.267±0.10
ENSMUST00000170200 N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A 13.878±0.00 53.462±36.41 1.865±1.22
ENSMUSG00000031467 ENSMUST00000033847 8.396±1.76 20.143±7.33 6.452±0.70 9.999±3.02 5.017±1.47 25.669±3.21 6.221±0.68 6.576±1.88 5.251±2.91 7.372±1.95 4.190±0.42 27.750±11.93 13.033±6.41 2.110±0.50
ENSMUST00000149565 0.457±0.14 N/A 0.711±0.05 1.358±0.41 0.534±0.02 0.931±0.00 0.270±0.03 0.608±0.14 0.311±0.10 0.719±0.05 0.498±0.07 0.329±0.15 0.408±0.23 0.209±0.18
ENSMUSG00000039814 ENSMUST00000055503 0.074±0.05 0.198±0.12 N/A 0.191±0.02 0.065±0.00 0.161±0.03 0.037±0.01 N/A 0.368±0.21 0.041±0.00 N/A 0.649±0.24 0.076±0.01 N/A
ENSMUST00000095438 0.352±0.00 0.501±0.29 0.093±0.01 0.089±0.03 N/A 0.289±0.14 0.010±0.00 N/A 0.390±0.18 0.052±0.00 N/A 0.507±0.19 0.161±0.12 0.111±0.07
ENSMUST00000143913 0.113±0.07 N/A N/A 0.052±0.00 0.033±0.00 N/A N/A 0.023±0.01 N/A 0.032±0.01 0.030±0.01 N/A 0.057±0.02 0.054±0.00
ENSMUST00000144987 0.019±0.00 0.057±0.02 0.031±0.00 0.036±0.01 0.062±0.04 0.044±0.00 N/A N/A 0.137±0.07 0.034±0.01 N/A 0.153±0.01 0.043±0.01 N/A
ENSMUST00000152974 N/A N/A N/A N/A 0.056±0.04 N/A N/A N/A N/A N/A N/A 0.330±0.06 0.026±0.00 0.080±0.01
ENSMUSG00000039842 ENSMUST00000039412 2.559±0.53 0.885±0.11 1.079±0.12 1.790±0.21 1.203±0.56 0.729±0.10 0.695±0.10 0.676±0.21 2.410±2.20 0.963±0.07 0.692±0.19 2.526±0.86 2.742±1.88 1.452±0.55
ENSMUST00000124910 N/A N/A N/A N/A 0.320±0.07 0.127±0.03 N/A 0.094±0.00 N/A N/A N/A 0.641±0.19 N/A 0.492±0.06
ENSMUST00000133417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146819 N/A N/A N/A 0.746±0.00 N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A 1.502±0.75 N/A
ENSMUST00000153133 N/A N/A N/A N/A N/A N/A N/A 0.306±0.10 N/A N/A N/A N/A 0.311±0.00 N/A
ENSMUSG00000053678 ENSMUST00000066258 0.161±0.00 N/A N/A 0.066±0.00 0.330±0.00 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 16.414±11.18
ENSMUSG00000053695 ENSMUST00000066282 0.172±0.00 N/A N/A N/A N/A 4.159±2.56 N/A N/A N/A N/A N/A N/A N/A 5.196±3.04
ENSMUSG00000090334 ENSMUST00000164712 0.298±0.15 N/A 0.091±0.01 0.294±0.06 1.191±0.85 N/A 0.245±0.09 0.264±0.10 0.106±0.04 0.464±0.15 N/A 0.886±0.55 0.338±0.28 0.189±0.00

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