C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008KX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1550 VISTA 9606 5:93105796-93709037
GeneTranscriptPositionBiotype
ENSG00000113391 (FAM172A)
family with sequence similarity 172, member A 		ENST00000395965 (FAM172A-001) 93618069-94111635 protein_coding
ENST00000502503 (FAM172A-002) 93621081-94111699 nonsense_mediated_decay
ENST00000504768 (FAM172A-008) 93910696-94074771 processed_transcript
ENST00000505869 (FAM172A-006) 93620691-94111648 protein_coding
ENST00000506398 (FAM172A-004) 93881311-94074771 retained_intron
ENST00000509163 (FAM172A-005) 93620929-94111676 protein_coding
ENST00000509739 (FAM172A-007) 93620883-94074720 protein_coding
ENST00000510445 (FAM172A-010) 93784195-93881601 retained_intron
ENST00000511139 (FAM172A-011) 93776158-93824254 retained_intron
ENSG00000175745 (NR2F1)
nuclear receptor subfamily 2, group F, member 1 		ENST00000327111 (NR2F1-001) 93583337-93594615 protein_coding
ENST00000502982 (NR2F1-003) 93587460-93588388 processed_transcript
ENST00000506162 (NR2F1-005) 93591973-93594143 processed_transcript
ENST00000512697 (NR2F1-002) 93587101-93588333 processed_transcript
ENST00000615873 (NR2F1-201) 93585024-93594072 protein_coding
ENSG00000213730 (POLD2P1)
polymerase (DNA directed), delta 2, accessory subunit pseudogene 1 		ENST00000511220 (POLD2P1-001) 93267429-93268425 processed_pseudogene
ENSG00000237187 (NR2F1-AS1)
NR2F1 antisense RNA 1 		ENST00000503134 (NR2F1-AS1-002) 93543542-93581032 antisense
ENST00000504474 (NR2F1-AS1-004) 93541872-93581297 antisense
ENST00000507963 (NR2F1-AS1-003) 93553753-93581055 antisense
ENST00000510254 (NR2F1-AS1-005) 93411289-93581007 antisense
ENST00000513055 (NR2F1-AS1-001) 93553761-93585648 antisense
ENST00000606165 (NR2F1-AS1-012) 93411018-93423242 antisense
ENST00000606188 (NR2F1-AS1-015) 93411018-93438737 antisense
ENST00000606233 (NR2F1-AS1-010) 93409809-93581219 antisense
ENST00000606696 (NR2F1-AS1-011) 93541872-93581288 antisense
ENST00000606739 (NR2F1-AS1-009) 93411021-93570819 antisense
ENST00000607112 (NR2F1-AS1-013) 93411402-93422413 antisense
ENST00000607195 (NR2F1-AS1-014) 93411033-93422423 antisense
ENST00000607797 (NR2F1-AS1-008) 93409359-93570793 antisense
ENST00000607831 (NR2F1-AS1-006) 93411447-93571343 antisense
ENSG00000249353 (NPM1P27)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 27 		ENST00000502784 (NPM1P27-001) 93682838-93683667 processed_pseudogene
ENSG00000278905 (RP11-65F13.3)
 ENST00000623223 (RP11-65F13.3-001) 93600357-93603598 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008KX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1550 VISTA 10090 13:78144587-78747858
GeneTranscriptPositionBiotype
ENSMUSG00000064138 (Fam172a)
family with sequence similarity 172, member A 		ENSMUST00000091459 (Fam172a-201) 77708690-78166238 protein_coding
ENSMUST00000099358 (Fam172a-202) 77708690-78166238 protein_coding
ENSMUST00000163257 (Fam172a-203) 77708690-78166238 protein_coding
ENSMUSG00000069171 (Nr2f1)
nuclear receptor subfamily 2, group F, member 1 		ENSMUST00000091458 (Nr2f1-001) 78188973-78199757 protein_coding
ENSMUST00000125176 (Nr2f1-002) 78189733-78196373 protein_coding
ENSMUST00000127137 (Nr2f1-004) 78189672-78197930 protein_coding
ENSMUST00000135284 (Nr2f1-005) 78189872-78190443 processed_transcript
ENSMUST00000150498 (Nr2f1-003) 78189152-78197038 protein_coding
ENSMUSG00000087143 (A830082K12Rik)
RIKEN cDNA A830082K12 gene 		ENSMUST00000123998 (A830082K12Rik-002) 78202374-78236564 antisense
ENSMUST00000131564 (A830082K12Rik-004) 78201984-78234713 antisense
ENSMUST00000134705 (A830082K12Rik-005) 78202553-78231386 antisense
ENSMUST00000137199 (A830082K12Rik-007) 78199738-78200515 antisense
ENSMUST00000144545 (A830082K12Rik-003) 78199778-78231977 antisense
ENSMUST00000145613 (A830082K12Rik-001) 78198017-78235733 antisense
ENSMUST00000183171 (A830082K12Rik-006) 78202787-78279391 antisense
ENSMUSG00000098003 (Gm6317)
predicted gene 6317 		ENSMUST00000183159 (Gm6317-001) 78372987-78379134 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KX_0001ENSG00000113391ENST00000395965ENST00000506398ENST00000509163ENST00000509739ENSG00000175745ENST00000327111ENST00000615873ENSG00000213730ENST00000511220ENSG00000237187ENST00000503134ENST00000507963ENST00000606188ENST00000606233ENST00000606696ENST00000606739ENST00000607797ENST00000607831ENSG00000249353ENST00000502784ENSG00000278905ENST00000623223CIL_0008KX_0002ENSMUSG00000064138ENSMUST00000091459ENSMUST00000099358ENSMUST00000163257ENSMUSG00000069171ENSMUST00000091458ENSMUST00000125176ENSMUST00000127137ENSMUST00000150498ENSMUSG00000087143ENSMUST00000123998ENSMUST00000134705ENSMUST00000137199ENSMUST00000144545ENSMUST00000145613ENSMUST00000183171ENSMUSG00000098003ENSMUST00000183159
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113391 ENST00000395965 1.010±0.00 2.938±0.00 1.176±0.00 4.301±0.11 4.061±1.81 1.962±0.76 1.664±0.66 1.961±1.01 5.019±0.00 2.258±0.25 0.847±0.00 2.664±1.36 1.770±0.31 1.770±0.07
ENST00000502503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506398 N/A N/A N/A N/A N/A 3.473±0.00 N/A N/A N/A N/A N/A N/A N/A 2.890±0.00
ENST00000509163 N/A N/A 3.481±0.00 5.470±0.00 7.723±0.00 5.840±0.00 2.915±0.00 2.060±0.00 7.245±0.00 9.286±0.00 1.185±0.50 2.553±1.27 2.190±0.00 N/A
ENST00000509739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.665±0.00 N/A N/A N/A
ENST00000510445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175745 ENST00000327111 3.579±0.00 14.334±0.00 2.311±0.00 14.802±0.00 2.585±2.01 2.762±2.44 0.115±0.07 7.528±6.97 2.566±0.49 14.395±13.47 0.049±0.00 16.939±19.89 20.675±7.35 6.868±3.22
ENST00000502982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 20.511±0.00 21.360±4.68 N/A
ENSG00000213730 ENST00000511220 0.062±0.00 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A 0.019±0.00 0.030±0.00 0.175±0.00 0.041±0.00
ENSG00000237187 ENST00000503134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A
ENST00000504474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507963 N/A N/A N/A N/A N/A N/A N/A N/A 4.141±0.00 N/A N/A N/A N/A N/A
ENST00000510254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606188 N/A N/A N/A N/A 7.852±0.00 6.398±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606233 N/A N/A N/A 6.016±1.67 N/A N/A N/A N/A N/A N/A 0.026±0.00 0.925±0.00 N/A N/A
ENST00000606696 N/A N/A N/A N/A 1.521±0.00 1.129±0.00 0.148±0.06 N/A 3.706±0.00 2.171±0.00 N/A N/A N/A 2.587±0.00
ENST00000606739 N/A N/A N/A N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A
ENST00000607831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.223±0.00
ENSG00000249353 ENST00000502784 0.014±0.00 0.044±0.00 0.493±0.00 0.076±0.05 0.574±0.56 0.173±0.16 0.054±0.02 0.219±0.10 0.151±0.14 0.656±0.00 0.074±0.06 0.949±1.12 0.070±0.04 0.077±0.03
ENSG00000278905 ENST00000623223 N/A N/A 0.397±0.00 0.088±0.00 N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.036±0.00 0.013±0.00 0.008±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000064138 ENSMUST00000091459 0.563±0.02 2.478±0.00 4.876±0.18 5.990±1.12 N/A 0.973±0.38 0.730±0.00 0.658±0.08 1.942±1.25 2.216±0.64 1.525±0.39 4.677±2.03 3.107±0.43 0.867±0.57
ENSMUST00000099358 4.816±1.64 19.453±3.87 N/A 2.962±0.10 7.504±6.87 5.051±1.66 1.232±0.45 2.982±1.18 1.507±0.76 6.480±3.52 N/A 12.438±3.44 N/A 1.063±0.56
ENSMUST00000163257 2.405±0.06 N/A 1.019±0.00 N/A 1.018±0.19 N/A 0.718±0.00 0.604±0.09 0.521±0.30 1.598±0.31 N/A 1.452±0.73 0.404±0.00 1.302±0.46
ENSMUSG00000069171 ENSMUST00000091458 1.242±0.23 4.609±1.14 3.560±0.21 42.445±24.12 1.311±0.12 0.432±0.11 1.081±0.06 0.597±0.14 0.342±0.28 1.933±0.35 0.140±0.05 2.684±0.78 0.271±0.21 0.106±0.05
ENSMUST00000125176 3.050±0.92 23.528±1.27 7.399±1.19 142.020±9.68 7.715±2.28 1.878±0.46 2.859±1.03 1.902±0.50 0.949±0.67 8.761±1.12 0.210±0.00 15.865±2.43 0.787±0.41 0.176±0.13
ENSMUST00000127137 3.429±1.47 N/A N/A N/A 2.771±0.82 N/A 1.572±0.00 0.469±0.01 0.143±0.00 N/A 0.278±0.01 N/A N/A N/A
ENSMUST00000135284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A 0.031±0.00
ENSMUSG00000087143 ENSMUST00000123998 N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A 0.216±0.03 N/A 0.073±0.03 N/A 0.052±0.03 0.075±0.04
ENSMUST00000131564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.378±0.00 N/A N/A N/A
ENSMUST00000137199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 1.458±0.00 N/A N/A
ENSMUST00000144545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A
ENSMUST00000145613 N/A N/A N/A N/A N/A N/A N/A N/A 0.398±0.01 N/A 0.089±0.02 0.651±0.00 N/A N/A
ENSMUST00000183171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.04
ENSMUSG00000098003 ENSMUST00000183159 N/A N/A N/A 0.023±0.00 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A

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