Notice (8): Undefined index: CIL_0008L5_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000176678' => 'forkhead box L1',
'ENSG00000176692' => 'forkhead box C2 (MFH-1, mesenchyme forkhead 1)',
'ENSG00000199949' => 'Y RNA',
'ENSG00000243697' => null,
'ENSG00000260387' => null,
'ENSG00000260944' => 'FOXC2 antisense RNA 1',
'ENSG00000261161' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269826' => null,
'ENSG00000270020' => null,
'ENSG00000270058' => null,
'ENSG00000275388' => null,
'ENSG00000275934' => null,
'ENSG00000277360' => null,
'ENSG00000279142' => null,
'ENSG00000280278' => 'uncharacterized protein FLJ30679',
'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000046714' => 'forkhead box C2',
'ENSMUSG00000088416' => 'predicted gene, 24239',
'ENSMUSG00000096952' => 'predicted gene, 26572',
'ENSMUSG00000097084' => 'forkhead box L1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097097' => 'RIKEN cDNA 5033426O07 gene',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000097384' => 'predicted gene, 26815',
'ENSMUSG00000097895' => 'predicted gene, 18709',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
),
'gene_name_arr' => array(
'ENSG00000103241' => 'FOXF1',
'ENSG00000103248' => 'MTHFSD',
'ENSG00000168367' => 'LINC00917',
'ENSG00000176678' => 'FOXL1',
'ENSG00000176692' => 'FOXC2',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000243697' => 'RP11-463O9.1',
'ENSG00000260387' => 'RP11-463O9.6',
'ENSG00000260944' => 'FOXC2-AS1',
'ENSG00000261161' => 'RP11-58A18.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270020' => 'RP11-463O9.9',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000275934' => 'AC009108.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279142' => 'RP11-463O9.2',
'ENSG00000280278' => 'FLJ30679',
'ENSMUSG00000031816' => 'Mthfsd',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000046714' => 'Foxc2',
'ENSMUSG00000088416' => 'Gm24239',
'ENSMUSG00000096952' => 'Gm26572',
'ENSMUSG00000097084' => 'Foxl1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097097' => '5033426O07Rik',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000097384' => 'Gm26815',
'ENSMUSG00000097895' => 'Gm18709',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 33 => 'Brain',
(int) 46 => 'Breast',
(int) 63 => 'Colon',
(int) 82 => 'Heart',
(int) 95 => 'Kidney',
(int) 107 => 'Liver',
(int) 121 => 'Lung',
(int) 137 => 'Muscle',
(int) 146 => 'Ovary',
(int) 163 => 'Placenta',
(int) 176 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 92,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000360900' => array(
'start' => '86530176',
'end' => '86555210',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-001'
),
'ENST00000381214' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-003'
),
'ENST00000543303' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-002'
),
'ENST00000546093' => array(
'start' => '86530833',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-004'
),
'ENST00000561522' => array(
'start' => '86542117',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-010'
),
'ENST00000561848' => array(
'start' => '86552038',
'end' => '86553721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MTHFSD-016'
),
'ENST00000561989' => array(
'start' => '86548067',
'end' => '86555169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-012'
),
'ENST00000562096' => array(
'start' => '86532362',
'end' => '86542545',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MTHFSD-019'
),
'ENST00000562940' => array(
'start' => '86540720',
'end' => '86554749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-005'
),
'ENST00000562994' => array(
'start' => '86542112',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-009'
),
'ENST00000564364' => array(
'start' => '86546605',
'end' => '86555154',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-014'
),
'ENST00000565482' => array(
'start' => '86548488',
'end' => '86555021',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-015'
),
'ENST00000566050' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-007'
),
'ENST00000566469' => array(
'start' => '86541535',
'end' => '86554748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-018'
),
'ENST00000567539' => array(
'start' => '86532336',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-013'
),
'ENST00000568037' => array(
'start' => '86547146',
'end' => '86555178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-017'
),
'ENST00000568798' => array(
'start' => '86542110',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-008'
),
'ENST00000569000' => array(
'start' => '86541739',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-011'
),
'ENST00000625049' => array(
'start' => '86530178',
'end' => '86533800',
'transcript_biotype' => 'TEC',
'transcript_name' => 'MTHFSD-006'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000320241' => array(
'start' => '86578506',
'end' => '86582160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-001'
),
'ENST00000593625' => array(
'start' => '86576368',
'end' => '86579066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-002'
),
'ENST00000320354' => array(
'start' => '86567251',
'end' => '86569728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXC2-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000473913' => array(
'start' => '86525457',
'end' => '86526252',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-463O9.1-001'
),
'ENST00000566485' => array(
'start' => '86636328',
'end' => '86637145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.6-001'
),
'ENST00000563280' => array(
'start' => '86565145',
'end' => '86567761',
'transcript_biotype' => 'antisense',
'transcript_name' => 'FOXC2-AS1-001'
),
'ENST00000565822' => array(
'start' => '86646301',
'end' => '86668923',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-58A18.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602739' => array(
'start' => '86520383',
'end' => '86523897',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.9-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000613364' => array(
'start' => '86613416',
'end' => '86613498',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000623284' => array(
'start' => '86595189',
'end' => '86597639',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-463O9.2-001'
),
'ENST00000624773' => array(
'start' => '86555320',
'end' => '86557299',
'transcript_biotype' => 'TEC',
'transcript_name' => 'FLJ30679-001'
),
'ENSMUST00000047282' => array(
'start' => '121097940',
'end' => '121108318',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-002'
),
'ENSMUST00000116415' => array(
'start' => '121097557',
'end' => '121108327',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-001'
),
'ENSMUST00000126431' => array(
'start' => '121101176',
'end' => '121108298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-010'
),
'ENSMUST00000128052' => array(
'start' => '121097555',
'end' => '121108295',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-003'
),
'ENSMUST00000128503' => array(
'start' => '121104475',
'end' => '121108343',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-006'
),
'ENSMUST00000133037' => array(
'start' => '121097851',
'end' => '121108392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-005'
),
'ENSMUST00000133058' => array(
'start' => '121095012',
'end' => '121101185',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-015'
),
'ENSMUST00000134758' => array(
'start' => '121098708',
'end' => '121108288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-011'
),
'ENSMUST00000138908' => array(
'start' => '121099008',
'end' => '121105632',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-012'
),
'ENSMUST00000139782' => array(
'start' => '121097557',
'end' => '121108310',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-008'
),
'ENSMUST00000140260' => array(
'start' => '121097767',
'end' => '121101593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-013'
),
'ENSMUST00000145991' => array(
'start' => '121103852',
'end' => '121105689',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-014'
),
'ENSMUST00000149718' => array(
'start' => '121097937',
'end' => '121108379',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-004'
),
'ENSMUST00000151576' => array(
'start' => '121104099',
'end' => '121108313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-007'
),
'ENSMUST00000156606' => array(
'start' => '121102723',
'end' => '121107643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-009'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000054691' => array(
'start' => '121116171',
'end' => '121118895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxc2-001'
),
'ENSMUST00000157791' => array(
'start' => '120717500',
'end' => '120717754',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24239-201'
),
'ENSMUST00000181096' => array(
'start' => '121091628',
'end' => '121094858',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26572-001'
),
'ENSMUST00000181609' => array(
'start' => '121127940',
'end' => '121130644',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxl1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000180796' => array(
'start' => '121198714',
'end' => '121201835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033426O07Rik-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000181200' => array(
'start' => '121256747',
'end' => '121356836',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26815-001'
),
'ENSMUST00000180564' => array(
'start' => '120727263',
'end' => '120727943',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm18709-001'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000103248' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000176678' => array(
[maximum depth reached]
),
'ENSG00000176692' => array(
[maximum depth reached]
),
'ENSG00000243697' => array(
[maximum depth reached]
),
'ENSG00000261161' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270020' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000275934' => array(
[maximum depth reached]
),
'ENSG00000279142' => array(
[maximum depth reached]
),
'ENSG00000280278' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Adipose',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Muscle',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Muscle',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Colon',
(int) 44 => 'Breast',
(int) 45 => 'Liver',
(int) 46 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Testis',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Lung',
(int) 93 => 'Testis',
(int) 94 => 'Colon',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Breast',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Ovary',
(int) 126 => 'Placenta',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Kidney',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Colon',
(int) 146 => 'Lung',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Colon',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Ovary',
(int) 154 => 'Placenta',
(int) 155 => 'Testis',
(int) 156 => 'Adipose',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Placenta',
(int) 169 => 'Testis',
(int) 170 => 'Adrenal',
(int) 171 => 'Brain',
(int) 172 => 'Colon',
(int) 173 => 'Lung',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Testis',
(int) 177 => 'Adipose',
(int) 178 => 'Adrenal',
(int) 179 => 'Colon',
(int) 180 => 'Heart',
(int) 181 => 'Lung',
(int) 182 => 'Testis',
(int) 183 => 'Adrenal',
(int) 184 => 'Bladder',
(int) 185 => 'Breast',
(int) 186 => 'Colon',
(int) 187 => 'Kidney',
(int) 188 => 'Testis',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000176678' => 'forkhead box L1',
'ENSG00000176692' => 'forkhead box C2 (MFH-1, mesenchyme forkhead 1)',
'ENSG00000199949' => 'Y RNA',
'ENSG00000243697' => null,
'ENSG00000260387' => null,
'ENSG00000260944' => 'FOXC2 antisense RNA 1',
'ENSG00000261161' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269826' => null,
'ENSG00000270020' => null,
'ENSG00000270058' => null,
'ENSG00000275388' => null,
'ENSG00000275934' => null,
'ENSG00000277360' => null,
'ENSG00000279142' => null,
'ENSG00000280278' => 'uncharacterized protein FLJ30679',
'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000046714' => 'forkhead box C2',
'ENSMUSG00000088416' => 'predicted gene, 24239',
'ENSMUSG00000096952' => 'predicted gene, 26572',
'ENSMUSG00000097084' => 'forkhead box L1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097097' => 'RIKEN cDNA 5033426O07 gene',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000097384' => 'predicted gene, 26815',
'ENSMUSG00000097895' => 'predicted gene, 18709',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
'ENSG00000103241' => 'FOXF1',
'ENSG00000103248' => 'MTHFSD',
'ENSG00000168367' => 'LINC00917',
'ENSG00000176678' => 'FOXL1',
'ENSG00000176692' => 'FOXC2',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000243697' => 'RP11-463O9.1',
'ENSG00000260387' => 'RP11-463O9.6',
'ENSG00000260944' => 'FOXC2-AS1',
'ENSG00000261161' => 'RP11-58A18.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270020' => 'RP11-463O9.9',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000275934' => 'AC009108.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279142' => 'RP11-463O9.2',
'ENSG00000280278' => 'FLJ30679',
'ENSMUSG00000031816' => 'Mthfsd',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000046714' => 'Foxc2',
'ENSMUSG00000088416' => 'Gm24239',
'ENSMUSG00000096952' => 'Gm26572',
'ENSMUSG00000097084' => 'Foxl1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097097' => '5033426O07Rik',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000097384' => 'Gm26815',
'ENSMUSG00000097895' => 'Gm18709',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '86096481',
'seq_end' => '86697120',
'region_length' => '600639',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120702895',
'seq_end' => '121303512',
'region_length' => '600617',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 33 => 'Brain',
(int) 46 => 'Breast',
(int) 63 => 'Colon',
(int) 82 => 'Heart',
(int) 95 => 'Kidney',
(int) 107 => 'Liver',
(int) 121 => 'Lung',
(int) 137 => 'Muscle',
(int) 146 => 'Ovary',
(int) 163 => 'Placenta',
(int) 176 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 92
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000360900' => array(
'start' => '86530176',
'end' => '86555210',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-001'
),
'ENST00000381214' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-003'
),
'ENST00000543303' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-002'
),
'ENST00000546093' => array(
'start' => '86530833',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-004'
),
'ENST00000561522' => array(
'start' => '86542117',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-010'
),
'ENST00000561848' => array(
'start' => '86552038',
'end' => '86553721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MTHFSD-016'
),
'ENST00000561989' => array(
'start' => '86548067',
'end' => '86555169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-012'
),
'ENST00000562096' => array(
'start' => '86532362',
'end' => '86542545',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MTHFSD-019'
),
'ENST00000562940' => array(
'start' => '86540720',
'end' => '86554749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-005'
),
'ENST00000562994' => array(
'start' => '86542112',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-009'
),
'ENST00000564364' => array(
'start' => '86546605',
'end' => '86555154',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-014'
),
'ENST00000565482' => array(
'start' => '86548488',
'end' => '86555021',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-015'
),
'ENST00000566050' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-007'
),
'ENST00000566469' => array(
'start' => '86541535',
'end' => '86554748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-018'
),
'ENST00000567539' => array(
'start' => '86532336',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-013'
),
'ENST00000568037' => array(
'start' => '86547146',
'end' => '86555178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-017'
),
'ENST00000568798' => array(
'start' => '86542110',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-008'
),
'ENST00000569000' => array(
'start' => '86541739',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-011'
),
'ENST00000625049' => array(
'start' => '86530178',
'end' => '86533800',
'transcript_biotype' => 'TEC',
'transcript_name' => 'MTHFSD-006'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000320241' => array(
'start' => '86578506',
'end' => '86582160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-001'
),
'ENST00000593625' => array(
'start' => '86576368',
'end' => '86579066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-002'
),
'ENST00000320354' => array(
'start' => '86567251',
'end' => '86569728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXC2-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000473913' => array(
'start' => '86525457',
'end' => '86526252',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-463O9.1-001'
),
'ENST00000566485' => array(
'start' => '86636328',
'end' => '86637145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.6-001'
),
'ENST00000563280' => array(
'start' => '86565145',
'end' => '86567761',
'transcript_biotype' => 'antisense',
'transcript_name' => 'FOXC2-AS1-001'
),
'ENST00000565822' => array(
'start' => '86646301',
'end' => '86668923',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-58A18.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602739' => array(
'start' => '86520383',
'end' => '86523897',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.9-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000613364' => array(
'start' => '86613416',
'end' => '86613498',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000623284' => array(
'start' => '86595189',
'end' => '86597639',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-463O9.2-001'
),
'ENST00000624773' => array(
'start' => '86555320',
'end' => '86557299',
'transcript_biotype' => 'TEC',
'transcript_name' => 'FLJ30679-001'
),
'ENSMUST00000047282' => array(
'start' => '121097940',
'end' => '121108318',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-002'
),
'ENSMUST00000116415' => array(
'start' => '121097557',
'end' => '121108327',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-001'
),
'ENSMUST00000126431' => array(
'start' => '121101176',
'end' => '121108298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-010'
),
'ENSMUST00000128052' => array(
'start' => '121097555',
'end' => '121108295',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-003'
),
'ENSMUST00000128503' => array(
'start' => '121104475',
'end' => '121108343',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-006'
),
'ENSMUST00000133037' => array(
'start' => '121097851',
'end' => '121108392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-005'
),
'ENSMUST00000133058' => array(
'start' => '121095012',
'end' => '121101185',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-015'
),
'ENSMUST00000134758' => array(
'start' => '121098708',
'end' => '121108288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-011'
),
'ENSMUST00000138908' => array(
'start' => '121099008',
'end' => '121105632',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-012'
),
'ENSMUST00000139782' => array(
'start' => '121097557',
'end' => '121108310',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-008'
),
'ENSMUST00000140260' => array(
'start' => '121097767',
'end' => '121101593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-013'
),
'ENSMUST00000145991' => array(
'start' => '121103852',
'end' => '121105689',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-014'
),
'ENSMUST00000149718' => array(
'start' => '121097937',
'end' => '121108379',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-004'
),
'ENSMUST00000151576' => array(
'start' => '121104099',
'end' => '121108313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-007'
),
'ENSMUST00000156606' => array(
'start' => '121102723',
'end' => '121107643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-009'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000054691' => array(
'start' => '121116171',
'end' => '121118895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxc2-001'
),
'ENSMUST00000157791' => array(
'start' => '120717500',
'end' => '120717754',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24239-201'
),
'ENSMUST00000181096' => array(
'start' => '121091628',
'end' => '121094858',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26572-001'
),
'ENSMUST00000181609' => array(
'start' => '121127940',
'end' => '121130644',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxl1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000180796' => array(
'start' => '121198714',
'end' => '121201835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033426O07Rik-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000181200' => array(
'start' => '121256747',
'end' => '121356836',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26815-001'
),
'ENSMUST00000180564' => array(
'start' => '120727263',
'end' => '120727943',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm18709-001'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000103248' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000176678' => array(
[maximum depth reached]
),
'ENSG00000176692' => array(
[maximum depth reached]
),
'ENSG00000243697' => array(
[maximum depth reached]
),
'ENSG00000261161' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270020' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000275934' => array(
[maximum depth reached]
),
'ENSG00000279142' => array(
[maximum depth reached]
),
'ENSG00000280278' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Adipose',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Muscle',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Muscle',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Colon',
(int) 44 => 'Breast',
(int) 45 => 'Liver',
(int) 46 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Testis',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Lung',
(int) 93 => 'Testis',
(int) 94 => 'Colon',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Breast',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Ovary',
(int) 126 => 'Placenta',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Kidney',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Colon',
(int) 146 => 'Lung',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Colon',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Ovary',
(int) 154 => 'Placenta',
(int) 155 => 'Testis',
(int) 156 => 'Adipose',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Placenta',
(int) 169 => 'Testis',
(int) 170 => 'Adrenal',
(int) 171 => 'Brain',
(int) 172 => 'Colon',
(int) 173 => 'Lung',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Testis',
(int) 177 => 'Adipose',
(int) 178 => 'Adrenal',
(int) 179 => 'Colon',
(int) 180 => 'Heart',
(int) 181 => 'Lung',
(int) 182 => 'Testis',
(int) 183 => 'Adrenal',
(int) 184 => 'Bladder',
(int) 185 => 'Breast',
(int) 186 => 'Colon',
(int) 187 => 'Kidney',
(int) 188 => 'Testis',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120702895',
'seq_end' => '121303512',
'region_length' => '600617',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
)
$gene_el = array(
'ENST00000624773' => array(
'Adipose' => array(
'average_FPKM' => '0.187',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.399',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.379',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.092',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.546',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000280278'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.187',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.399',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.379',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.092',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.546',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000624773'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000176678' => 'forkhead box L1',
'ENSG00000176692' => 'forkhead box C2 (MFH-1, mesenchyme forkhead 1)',
'ENSG00000199949' => 'Y RNA',
'ENSG00000243697' => null,
'ENSG00000260387' => null,
'ENSG00000260944' => 'FOXC2 antisense RNA 1',
'ENSG00000261161' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269826' => null,
'ENSG00000270020' => null,
'ENSG00000270058' => null,
'ENSG00000275388' => null,
'ENSG00000275934' => null,
'ENSG00000277360' => null,
'ENSG00000279142' => null,
'ENSG00000280278' => 'uncharacterized protein FLJ30679',
'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000046714' => 'forkhead box C2',
'ENSMUSG00000088416' => 'predicted gene, 24239',
'ENSMUSG00000096952' => 'predicted gene, 26572',
'ENSMUSG00000097084' => 'forkhead box L1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097097' => 'RIKEN cDNA 5033426O07 gene',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000097384' => 'predicted gene, 26815',
'ENSMUSG00000097895' => 'predicted gene, 18709',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
),
'gene_name_arr' => array(
'ENSG00000103241' => 'FOXF1',
'ENSG00000103248' => 'MTHFSD',
'ENSG00000168367' => 'LINC00917',
'ENSG00000176678' => 'FOXL1',
'ENSG00000176692' => 'FOXC2',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000243697' => 'RP11-463O9.1',
'ENSG00000260387' => 'RP11-463O9.6',
'ENSG00000260944' => 'FOXC2-AS1',
'ENSG00000261161' => 'RP11-58A18.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270020' => 'RP11-463O9.9',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000275934' => 'AC009108.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279142' => 'RP11-463O9.2',
'ENSG00000280278' => 'FLJ30679',
'ENSMUSG00000031816' => 'Mthfsd',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000046714' => 'Foxc2',
'ENSMUSG00000088416' => 'Gm24239',
'ENSMUSG00000096952' => 'Gm26572',
'ENSMUSG00000097084' => 'Foxl1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097097' => '5033426O07Rik',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000097384' => 'Gm26815',
'ENSMUSG00000097895' => 'Gm18709',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 33 => 'Brain',
(int) 46 => 'Breast',
(int) 63 => 'Colon',
(int) 82 => 'Heart',
(int) 95 => 'Kidney',
(int) 107 => 'Liver',
(int) 121 => 'Lung',
(int) 137 => 'Muscle',
(int) 146 => 'Ovary',
(int) 163 => 'Placenta',
(int) 176 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 92,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000360900' => array(
'start' => '86530176',
'end' => '86555210',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-001'
),
'ENST00000381214' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-003'
),
'ENST00000543303' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-002'
),
'ENST00000546093' => array(
'start' => '86530833',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-004'
),
'ENST00000561522' => array(
'start' => '86542117',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-010'
),
'ENST00000561848' => array(
'start' => '86552038',
'end' => '86553721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MTHFSD-016'
),
'ENST00000561989' => array(
'start' => '86548067',
'end' => '86555169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-012'
),
'ENST00000562096' => array(
'start' => '86532362',
'end' => '86542545',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MTHFSD-019'
),
'ENST00000562940' => array(
'start' => '86540720',
'end' => '86554749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-005'
),
'ENST00000562994' => array(
'start' => '86542112',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-009'
),
'ENST00000564364' => array(
'start' => '86546605',
'end' => '86555154',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-014'
),
'ENST00000565482' => array(
'start' => '86548488',
'end' => '86555021',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-015'
),
'ENST00000566050' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-007'
),
'ENST00000566469' => array(
'start' => '86541535',
'end' => '86554748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-018'
),
'ENST00000567539' => array(
'start' => '86532336',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-013'
),
'ENST00000568037' => array(
'start' => '86547146',
'end' => '86555178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-017'
),
'ENST00000568798' => array(
'start' => '86542110',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-008'
),
'ENST00000569000' => array(
'start' => '86541739',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-011'
),
'ENST00000625049' => array(
'start' => '86530178',
'end' => '86533800',
'transcript_biotype' => 'TEC',
'transcript_name' => 'MTHFSD-006'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000320241' => array(
'start' => '86578506',
'end' => '86582160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-001'
),
'ENST00000593625' => array(
'start' => '86576368',
'end' => '86579066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-002'
),
'ENST00000320354' => array(
'start' => '86567251',
'end' => '86569728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXC2-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000473913' => array(
'start' => '86525457',
'end' => '86526252',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-463O9.1-001'
),
'ENST00000566485' => array(
'start' => '86636328',
'end' => '86637145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.6-001'
),
'ENST00000563280' => array(
'start' => '86565145',
'end' => '86567761',
'transcript_biotype' => 'antisense',
'transcript_name' => 'FOXC2-AS1-001'
),
'ENST00000565822' => array(
'start' => '86646301',
'end' => '86668923',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-58A18.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602739' => array(
'start' => '86520383',
'end' => '86523897',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.9-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000613364' => array(
'start' => '86613416',
'end' => '86613498',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000623284' => array(
'start' => '86595189',
'end' => '86597639',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-463O9.2-001'
),
'ENST00000624773' => array(
'start' => '86555320',
'end' => '86557299',
'transcript_biotype' => 'TEC',
'transcript_name' => 'FLJ30679-001'
),
'ENSMUST00000047282' => array(
'start' => '121097940',
'end' => '121108318',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-002'
),
'ENSMUST00000116415' => array(
'start' => '121097557',
'end' => '121108327',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-001'
),
'ENSMUST00000126431' => array(
'start' => '121101176',
'end' => '121108298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-010'
),
'ENSMUST00000128052' => array(
'start' => '121097555',
'end' => '121108295',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-003'
),
'ENSMUST00000128503' => array(
'start' => '121104475',
'end' => '121108343',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-006'
),
'ENSMUST00000133037' => array(
'start' => '121097851',
'end' => '121108392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-005'
),
'ENSMUST00000133058' => array(
'start' => '121095012',
'end' => '121101185',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-015'
),
'ENSMUST00000134758' => array(
'start' => '121098708',
'end' => '121108288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-011'
),
'ENSMUST00000138908' => array(
'start' => '121099008',
'end' => '121105632',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-012'
),
'ENSMUST00000139782' => array(
'start' => '121097557',
'end' => '121108310',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-008'
),
'ENSMUST00000140260' => array(
'start' => '121097767',
'end' => '121101593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-013'
),
'ENSMUST00000145991' => array(
'start' => '121103852',
'end' => '121105689',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-014'
),
'ENSMUST00000149718' => array(
'start' => '121097937',
'end' => '121108379',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-004'
),
'ENSMUST00000151576' => array(
'start' => '121104099',
'end' => '121108313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-007'
),
'ENSMUST00000156606' => array(
'start' => '121102723',
'end' => '121107643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-009'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000054691' => array(
'start' => '121116171',
'end' => '121118895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxc2-001'
),
'ENSMUST00000157791' => array(
'start' => '120717500',
'end' => '120717754',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24239-201'
),
'ENSMUST00000181096' => array(
'start' => '121091628',
'end' => '121094858',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26572-001'
),
'ENSMUST00000181609' => array(
'start' => '121127940',
'end' => '121130644',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxl1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000180796' => array(
'start' => '121198714',
'end' => '121201835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033426O07Rik-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000181200' => array(
'start' => '121256747',
'end' => '121356836',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26815-001'
),
'ENSMUST00000180564' => array(
'start' => '120727263',
'end' => '120727943',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm18709-001'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000103248' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000176678' => array(
[maximum depth reached]
),
'ENSG00000176692' => array(
[maximum depth reached]
),
'ENSG00000243697' => array(
[maximum depth reached]
),
'ENSG00000261161' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270020' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000275934' => array(
[maximum depth reached]
),
'ENSG00000279142' => array(
[maximum depth reached]
),
'ENSG00000280278' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Adipose',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Muscle',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Muscle',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Colon',
(int) 44 => 'Breast',
(int) 45 => 'Liver',
(int) 46 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Testis',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Lung',
(int) 93 => 'Testis',
(int) 94 => 'Colon',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Breast',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Ovary',
(int) 126 => 'Placenta',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Kidney',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Colon',
(int) 146 => 'Lung',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Colon',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Ovary',
(int) 154 => 'Placenta',
(int) 155 => 'Testis',
(int) 156 => 'Adipose',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Placenta',
(int) 169 => 'Testis',
(int) 170 => 'Adrenal',
(int) 171 => 'Brain',
(int) 172 => 'Colon',
(int) 173 => 'Lung',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Testis',
(int) 177 => 'Adipose',
(int) 178 => 'Adrenal',
(int) 179 => 'Colon',
(int) 180 => 'Heart',
(int) 181 => 'Lung',
(int) 182 => 'Testis',
(int) 183 => 'Adrenal',
(int) 184 => 'Bladder',
(int) 185 => 'Breast',
(int) 186 => 'Colon',
(int) 187 => 'Kidney',
(int) 188 => 'Testis',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000176678' => 'forkhead box L1',
'ENSG00000176692' => 'forkhead box C2 (MFH-1, mesenchyme forkhead 1)',
'ENSG00000199949' => 'Y RNA',
'ENSG00000243697' => null,
'ENSG00000260387' => null,
'ENSG00000260944' => 'FOXC2 antisense RNA 1',
'ENSG00000261161' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269826' => null,
'ENSG00000270020' => null,
'ENSG00000270058' => null,
'ENSG00000275388' => null,
'ENSG00000275934' => null,
'ENSG00000277360' => null,
'ENSG00000279142' => null,
'ENSG00000280278' => 'uncharacterized protein FLJ30679',
'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000046714' => 'forkhead box C2',
'ENSMUSG00000088416' => 'predicted gene, 24239',
'ENSMUSG00000096952' => 'predicted gene, 26572',
'ENSMUSG00000097084' => 'forkhead box L1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097097' => 'RIKEN cDNA 5033426O07 gene',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000097384' => 'predicted gene, 26815',
'ENSMUSG00000097895' => 'predicted gene, 18709',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
'ENSG00000103241' => 'FOXF1',
'ENSG00000103248' => 'MTHFSD',
'ENSG00000168367' => 'LINC00917',
'ENSG00000176678' => 'FOXL1',
'ENSG00000176692' => 'FOXC2',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000243697' => 'RP11-463O9.1',
'ENSG00000260387' => 'RP11-463O9.6',
'ENSG00000260944' => 'FOXC2-AS1',
'ENSG00000261161' => 'RP11-58A18.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270020' => 'RP11-463O9.9',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000275934' => 'AC009108.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279142' => 'RP11-463O9.2',
'ENSG00000280278' => 'FLJ30679',
'ENSMUSG00000031816' => 'Mthfsd',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000046714' => 'Foxc2',
'ENSMUSG00000088416' => 'Gm24239',
'ENSMUSG00000096952' => 'Gm26572',
'ENSMUSG00000097084' => 'Foxl1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097097' => '5033426O07Rik',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000097384' => 'Gm26815',
'ENSMUSG00000097895' => 'Gm18709',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '86096481',
'seq_end' => '86697120',
'region_length' => '600639',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120702895',
'seq_end' => '121303512',
'region_length' => '600617',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 33 => 'Brain',
(int) 46 => 'Breast',
(int) 63 => 'Colon',
(int) 82 => 'Heart',
(int) 95 => 'Kidney',
(int) 107 => 'Liver',
(int) 121 => 'Lung',
(int) 137 => 'Muscle',
(int) 146 => 'Ovary',
(int) 163 => 'Placenta',
(int) 176 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 92
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000360900' => array(
'start' => '86530176',
'end' => '86555210',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-001'
),
'ENST00000381214' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-003'
),
'ENST00000543303' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-002'
),
'ENST00000546093' => array(
'start' => '86530833',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-004'
),
'ENST00000561522' => array(
'start' => '86542117',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-010'
),
'ENST00000561848' => array(
'start' => '86552038',
'end' => '86553721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MTHFSD-016'
),
'ENST00000561989' => array(
'start' => '86548067',
'end' => '86555169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-012'
),
'ENST00000562096' => array(
'start' => '86532362',
'end' => '86542545',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MTHFSD-019'
),
'ENST00000562940' => array(
'start' => '86540720',
'end' => '86554749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-005'
),
'ENST00000562994' => array(
'start' => '86542112',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-009'
),
'ENST00000564364' => array(
'start' => '86546605',
'end' => '86555154',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-014'
),
'ENST00000565482' => array(
'start' => '86548488',
'end' => '86555021',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-015'
),
'ENST00000566050' => array(
'start' => '86531972',
'end' => '86555203',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-007'
),
'ENST00000566469' => array(
'start' => '86541535',
'end' => '86554748',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-018'
),
'ENST00000567539' => array(
'start' => '86532336',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-013'
),
'ENST00000568037' => array(
'start' => '86547146',
'end' => '86555178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-017'
),
'ENST00000568798' => array(
'start' => '86542110',
'end' => '86555235',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MTHFSD-008'
),
'ENST00000569000' => array(
'start' => '86541739',
'end' => '86555235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MTHFSD-011'
),
'ENST00000625049' => array(
'start' => '86530178',
'end' => '86533800',
'transcript_biotype' => 'TEC',
'transcript_name' => 'MTHFSD-006'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000320241' => array(
'start' => '86578506',
'end' => '86582160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-001'
),
'ENST00000593625' => array(
'start' => '86576368',
'end' => '86579066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXL1-002'
),
'ENST00000320354' => array(
'start' => '86567251',
'end' => '86569728',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXC2-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000473913' => array(
'start' => '86525457',
'end' => '86526252',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-463O9.1-001'
),
'ENST00000566485' => array(
'start' => '86636328',
'end' => '86637145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.6-001'
),
'ENST00000563280' => array(
'start' => '86565145',
'end' => '86567761',
'transcript_biotype' => 'antisense',
'transcript_name' => 'FOXC2-AS1-001'
),
'ENST00000565822' => array(
'start' => '86646301',
'end' => '86668923',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-58A18.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602739' => array(
'start' => '86520383',
'end' => '86523897',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-463O9.9-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000613364' => array(
'start' => '86613416',
'end' => '86613498',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000623284' => array(
'start' => '86595189',
'end' => '86597639',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-463O9.2-001'
),
'ENST00000624773' => array(
'start' => '86555320',
'end' => '86557299',
'transcript_biotype' => 'TEC',
'transcript_name' => 'FLJ30679-001'
),
'ENSMUST00000047282' => array(
'start' => '121097940',
'end' => '121108318',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-002'
),
'ENSMUST00000116415' => array(
'start' => '121097557',
'end' => '121108327',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-001'
),
'ENSMUST00000126431' => array(
'start' => '121101176',
'end' => '121108298',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-010'
),
'ENSMUST00000128052' => array(
'start' => '121097555',
'end' => '121108295',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-003'
),
'ENSMUST00000128503' => array(
'start' => '121104475',
'end' => '121108343',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-006'
),
'ENSMUST00000133037' => array(
'start' => '121097851',
'end' => '121108392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-005'
),
'ENSMUST00000133058' => array(
'start' => '121095012',
'end' => '121101185',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-015'
),
'ENSMUST00000134758' => array(
'start' => '121098708',
'end' => '121108288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-011'
),
'ENSMUST00000138908' => array(
'start' => '121099008',
'end' => '121105632',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-012'
),
'ENSMUST00000139782' => array(
'start' => '121097557',
'end' => '121108310',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mthfsd-008'
),
'ENSMUST00000140260' => array(
'start' => '121097767',
'end' => '121101593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-013'
),
'ENSMUST00000145991' => array(
'start' => '121103852',
'end' => '121105689',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-014'
),
'ENSMUST00000149718' => array(
'start' => '121097937',
'end' => '121108379',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-004'
),
'ENSMUST00000151576' => array(
'start' => '121104099',
'end' => '121108313',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mthfsd-007'
),
'ENSMUST00000156606' => array(
'start' => '121102723',
'end' => '121107643',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mthfsd-009'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000054691' => array(
'start' => '121116171',
'end' => '121118895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxc2-001'
),
'ENSMUST00000157791' => array(
'start' => '120717500',
'end' => '120717754',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24239-201'
),
'ENSMUST00000181096' => array(
'start' => '121091628',
'end' => '121094858',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26572-001'
),
'ENSMUST00000181609' => array(
'start' => '121127940',
'end' => '121130644',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxl1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000180796' => array(
'start' => '121198714',
'end' => '121201835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033426O07Rik-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000181200' => array(
'start' => '121256747',
'end' => '121356836',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26815-001'
),
'ENSMUST00000180564' => array(
'start' => '120727263',
'end' => '120727943',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm18709-001'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008L5_0001' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000103248' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000176678' => array(
[maximum depth reached]
),
'ENSG00000176692' => array(
[maximum depth reached]
),
'ENSG00000243697' => array(
[maximum depth reached]
),
'ENSG00000261161' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270020' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000275934' => array(
[maximum depth reached]
),
'ENSG00000279142' => array(
[maximum depth reached]
),
'ENSG00000280278' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Adipose',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Muscle',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Muscle',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Colon',
(int) 44 => 'Breast',
(int) 45 => 'Liver',
(int) 46 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Ovary',
(int) 51 => 'Testis',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Heart',
(int) 85 => 'Kidney',
(int) 86 => 'Liver',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Testis',
(int) 90 => 'Adrenal',
(int) 91 => 'Bladder',
(int) 92 => 'Lung',
(int) 93 => 'Testis',
(int) 94 => 'Colon',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Breast',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Testis',
(int) 104 => 'Adipose',
(int) 105 => 'Adrenal',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta',
(int) 115 => 'Testis',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Ovary',
(int) 126 => 'Placenta',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Kidney',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Colon',
(int) 146 => 'Lung',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Colon',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Ovary',
(int) 154 => 'Placenta',
(int) 155 => 'Testis',
(int) 156 => 'Adipose',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Placenta',
(int) 169 => 'Testis',
(int) 170 => 'Adrenal',
(int) 171 => 'Brain',
(int) 172 => 'Colon',
(int) 173 => 'Lung',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Testis',
(int) 177 => 'Adipose',
(int) 178 => 'Adrenal',
(int) 179 => 'Colon',
(int) 180 => 'Heart',
(int) 181 => 'Lung',
(int) 182 => 'Testis',
(int) 183 => 'Adrenal',
(int) 184 => 'Bladder',
(int) 185 => 'Breast',
(int) 186 => 'Colon',
(int) 187 => 'Kidney',
(int) 188 => 'Testis',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008L5_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120702895',
'seq_end' => '121303512',
'region_length' => '600617',
'region_type' => 'VISTA',
'el_id' => 'hs1'
)
)
$gene_el = array(
'ENST00000624773' => array(
'Adipose' => array(
'average_FPKM' => '0.187',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.399',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.379',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.092',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.546',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000280278'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.187',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.399',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.379',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.113',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.092',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.546',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000624773'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| hs1 |
VISTA |
10090 |
8:120702895-121303512  |
| Gene | Transcript | Position | Biotype |
|---|
(FOXF1)