C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008M6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs342 VISTA 9606 14:29091323-29693142
GeneTranscriptPositionBiotype
ENSG00000184304 (PRKD1)
protein kinase D1 		ENST00000331968 (PRKD1-001) 29576481-29927742 protein_coding
ENST00000415220 (PRKD1-002) 29576942-29927642 protein_coding
ENST00000468370 (PRKD1-003) 29638296-29666158 retained_intron
ENST00000490795 (PRKD1-004) 29591115-29597668 nonsense_mediated_decay
ENST00000546371 (PRKD1-007) 29630572-29634474 protein_coding
ENST00000547441 (PRKD1-005) 29638523-29657844 processed_transcript
ENST00000549503 (PRKD1-008) 29663812-30191898 protein_coding
ENST00000551644 (PRKD1-006) 29636443-29650520 processed_transcript
ENST00000616995 (PRKD1-201) 29576479-29927512 protein_coding
ENST00000621126 (PRKD1-202) 29576479-29725678 protein_coding
ENSG00000257522 (RP11-562L8.1)
 ENST00000548306 (RP11-562L8.1-002) 29274753-29381290 lincRNA
ENST00000548665 (RP11-562L8.1-005) 29274723-29353802 lincRNA
ENST00000550975 (RP11-562L8.1-004) 29264844-29378560 lincRNA
ENST00000551040 (RP11-562L8.1-003) 29264381-29378656 antisense
ENST00000551110 (RP11-562L8.1-001) 29267592-29381295 lincRNA
ENSG00000258107 (RP11-260G13.1)
 ENST00000549515 (RP11-260G13.1-001) 29390346-29436412 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008M6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs342 VISTA 10090 12:49821579-50423529
GeneTranscriptPositionBiotype
ENSMUSG00000002688 (Prkd1)
protein kinase D1 		ENSMUST00000002765 (Prkd1-201) 50341231-50649223 protein_coding
ENSMUSG00000098219 (Gm7481)
predicted gene 7481 		ENSMUST00000182020 (Gm7481-001) 49840757-49841751 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008M6_0001ENSG00000184304ENST00000331968ENST00000415220ENST00000468370ENST00000490795ENST00000546371ENST00000547441ENST00000549503ENST00000551644ENST00000616995ENST00000621126ENSG00000257522ENST00000548306ENST00000548665ENST00000550975ENST00000551040ENST00000551110ENSG00000258107ENST00000549515CIL_0008M6_0002ENSMUSG00000002688ENSMUST00000002765ENSMUSG00000098219ENSMUST00000182020
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008M6_0001ENSG00000184304ENST00000331968ENST00000415220ENST00000490795ENST00000546371ENST00000616995ENST00000621126ENSG00000257522ENST00000548306ENST00000548665ENST00000550975ENST00000551040ENST00000551110ENSG00000258107ENST00000549515CIL_0008M6_0002ENSMUSG00000002688ENSMUST00000002765ENSMUSG00000098219ENSMUST00000182020
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000184304 ENST00000331968 N/A N/A N/A N/A 0.582±0.00 0.628±0.44 0.614±0.00 1.072±0.00 N/A 0.297±0.00 0.170±0.00 4.306±3.12 0.514±0.01 N/A
ENST00000415220 0.394±0.00 N/A N/A 0.866±0.23 N/A N/A 0.205±0.00 N/A 1.359±0.00 0.695±0.00 N/A 0.175±0.02 0.610±0.35 4.263±1.17
ENST00000468370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A N/A
ENST00000546371 N/A N/A N/A N/A N/A N/A N/A 1.894±0.00 N/A N/A 0.477±0.00 N/A N/A N/A
ENST00000547441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616995 1.855±0.00 N/A N/A N/A 1.201±0.90 1.441±0.00 0.403±0.00 6.463±0.00 0.476±0.00 N/A N/A 0.695±0.00 0.330±0.00 4.247±0.00
ENST00000621126 N/A 2.315±0.00 N/A 1.203±0.00 N/A 0.563±0.00 N/A 0.079±0.00 N/A 0.900±0.00 0.160±0.00 1.134±0.90 1.078±0.00 1.509±0.00
ENSG00000257522 ENST00000548306 N/A N/A N/A 0.117±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548665 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A 0.022±0.00 0.156±0.00 0.176±0.00 N/A N/A 0.068±0.00
ENST00000550975 N/A N/A N/A 1.002±0.00 N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A 0.089±0.00
ENST00000551040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENST00000551110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.153±0.00
ENSG00000258107 ENST00000549515 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002688 ENSMUST00000002765 5.656±2.01 2.669±0.30 0.780±0.60 1.991±1.05 2.412±0.62 0.676±0.29 1.327±0.46 1.672±0.61 0.179±0.18 2.691±0.90 0.548±0.17 3.430±1.71 0.334±0.09 1.279±0.11
ENSMUSG00000098219 ENSMUST00000182020 N/A N/A N/A 0.016±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00

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