| Source ID |
Type |
Tax ID |
Position |
| hs1239 |
VISTA |
10090 |
3:16576170-17178776  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0008N1_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSMUSG00000088644' => 'predicted gene, 26485'
),
'gene_name_arr' => array(
'ENSG00000215096' => 'IFITM8P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSMUSG00000088644' => 'Gm26485'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Brain',
(int) 16 => 'Breast',
(int) 18 => 'Colon',
(int) 21 => 'Heart',
(int) 25 => 'Kidney',
(int) 28 => 'Liver',
(int) 31 => 'Lung',
(int) 35 => 'Ovary',
(int) 39 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 19,
'longest_tissue_len' => (int) 7,
'transcript_data' => array(
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Colon',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Brain',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Lung',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Adipose',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Testis',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Ovary',
(int) 40 => 'Testis',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Brain',
(int) 45 => 'Lung',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSMUSG00000088644' => 'predicted gene, 26485'
)
$gene_name_arr = array(
'ENSG00000215096' => 'IFITM8P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSMUSG00000088644' => 'Gm26485'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63351714',
'seq_end' => '63953415',
'region_length' => '601701',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16576170',
'seq_end' => '17178776',
'region_length' => '602606',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Brain',
(int) 16 => 'Breast',
(int) 18 => 'Colon',
(int) 21 => 'Heart',
(int) 25 => 'Kidney',
(int) 28 => 'Liver',
(int) 31 => 'Lung',
(int) 35 => 'Ovary',
(int) 39 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 19
$longest_tissue_len = (int) 7
$transcript_data = array(
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Colon',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Brain',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Lung',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Adipose',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Testis',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Ovary',
(int) 40 => 'Testis',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Brain',
(int) 45 => 'Lung',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16576170',
'seq_end' => '17178776',
'region_length' => '602606',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
)
$gene_el = array(
'ENST00000517899' => array(
'Brain' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.266',
'stddev_FPKM' => '0.00'
)
),
'ENST00000518739' => array(
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.007',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.09'
)
),
'ENST00000522740' => array(
'Brain' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000253894'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000522740'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSMUSG00000088644' => 'predicted gene, 26485'
),
'gene_name_arr' => array(
'ENSG00000215096' => 'IFITM8P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSMUSG00000088644' => 'Gm26485'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Brain',
(int) 16 => 'Breast',
(int) 18 => 'Colon',
(int) 21 => 'Heart',
(int) 25 => 'Kidney',
(int) 28 => 'Liver',
(int) 31 => 'Lung',
(int) 35 => 'Ovary',
(int) 39 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 19,
'longest_tissue_len' => (int) 7,
'transcript_data' => array(
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Colon',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Brain',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Lung',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Adipose',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Testis',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Ovary',
(int) 40 => 'Testis',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Brain',
(int) 45 => 'Lung',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000215096' => 'interferon induced transmembrane protein 8 pseudogene',
'ENSG00000252358' => 'RNA, 7SK small nuclear pseudogene 135',
'ENSG00000253205' => null,
'ENSG00000253554' => null,
'ENSG00000253583' => null,
'ENSG00000253734' => 'long intergenic non-protein coding RNA 1289',
'ENSG00000253762' => null,
'ENSG00000253894' => null,
'ENSMUSG00000088644' => 'predicted gene, 26485'
)
$gene_name_arr = array(
'ENSG00000215096' => 'IFITM8P',
'ENSG00000252358' => 'RN7SKP135',
'ENSG00000253205' => 'CTD-3046C4.1',
'ENSG00000253554' => 'RP11-32K4.1',
'ENSG00000253583' => 'RP11-573J24.1',
'ENSG00000253734' => 'LINC01289',
'ENSG00000253762' => 'RP11-579E24.2',
'ENSG00000253894' => 'RP11-45K10.2',
'ENSMUSG00000088644' => 'Gm26485'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0001',
'tax_id' => '9606',
'chromosome' => '8',
'seq_start' => '63351714',
'seq_end' => '63953415',
'region_length' => '601701',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16576170',
'seq_end' => '17178776',
'region_length' => '602606',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Brain',
(int) 16 => 'Breast',
(int) 18 => 'Colon',
(int) 21 => 'Heart',
(int) 25 => 'Kidney',
(int) 28 => 'Liver',
(int) 31 => 'Lung',
(int) 35 => 'Ovary',
(int) 39 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 19
$longest_tissue_len = (int) 7
$transcript_data = array(
'ENST00000522529' => array(
'start' => '63409064',
'end' => '63409457',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'IFITM8P-001'
),
'ENST00000516549' => array(
'start' => '63609354',
'end' => '63609600',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP135-201'
),
'ENST00000517829' => array(
'start' => '63385863',
'end' => '63417355',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-002'
),
'ENST00000519819' => array(
'start' => '63385609',
'end' => '63461550',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-006'
),
'ENST00000521061' => array(
'start' => '63432886',
'end' => '63470205',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-005'
),
'ENST00000521221' => array(
'start' => '63384839',
'end' => '63417930',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-001'
),
'ENST00000522086' => array(
'start' => '63466225',
'end' => '63470124',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-004'
),
'ENST00000522265' => array(
'start' => '63413633',
'end' => '63470199',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-3046C4.1-003'
),
'ENST00000520365' => array(
'start' => '64151106',
'end' => '64240282',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-003'
),
'ENST00000521958' => array(
'start' => '63856943',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-004'
),
'ENST00000523191' => array(
'start' => '63687179',
'end' => '64368558',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-001'
),
'ENST00000524360' => array(
'start' => '63728774',
'end' => '64240506',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-32K4.1-002'
),
'ENST00000523265' => array(
'start' => '63586000',
'end' => '63589408',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-573J24.1-001'
),
'ENST00000519550' => array(
'start' => '63769430',
'end' => '63785501',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01289-001'
),
'ENST00000522857' => array(
'start' => '63704756',
'end' => '63751677',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-579E24.2-001'
),
'ENST00000517899' => array(
'start' => '63470328',
'end' => '63472644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-002'
),
'ENST00000518739' => array(
'start' => '63465849',
'end' => '63475482',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-001'
),
'ENST00000522740' => array(
'start' => '63470285',
'end' => '63472648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-45K10.2-003'
),
'ENSMUST00000158019' => array(
'start' => '16823249',
'end' => '16823312',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm26485-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008N1_0001' => array(
'genes_in_region' => array(
'ENSG00000215096' => array(
[maximum depth reached]
),
'ENSG00000253205' => array(
[maximum depth reached]
),
'ENSG00000253554' => array(
[maximum depth reached]
),
'ENSG00000253583' => array(
[maximum depth reached]
),
'ENSG00000253734' => array(
[maximum depth reached]
),
'ENSG00000253762' => array(
[maximum depth reached]
),
'ENSG00000253894' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Colon',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Ovary',
(int) 8 => 'Testis',
(int) 9 => 'Brain',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Lung',
(int) 14 => 'Testis',
(int) 15 => 'Testis',
(int) 16 => 'Adipose',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Testis',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Ovary',
(int) 40 => 'Testis',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Brain',
(int) 45 => 'Lung',
(int) 46 => 'Testis',
(int) 47 => 'Brain',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008N1_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '16576170',
'seq_end' => '17178776',
'region_length' => '602606',
'region_type' => 'VISTA',
'el_id' => 'hs1239'
)
)
$gene_el = array(
'ENST00000517899' => array(
'Brain' => array(
'average_FPKM' => '0.030',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.266',
'stddev_FPKM' => '0.00'
)
),
'ENST00000518739' => array(
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.007',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.105',
'stddev_FPKM' => '0.09'
)
),
'ENST00000522740' => array(
'Brain' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000253894'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000522740'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(IFITM8P)