Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0008NM_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
hs119	VISTA	9606	X:24597265-25200155
Gene	Transcript	Position	Biotype
ENSG00000004848 (ARX) aristaless related homeobox	ENST00000379044 (ARX-001)	25003694-25015948	protein_coding
ENSG00000101868 (POLA1) polymerase (DNA directed), alpha 1, catalytic subunit	ENST00000379059 (POLA1-001)	24693947-24996986	protein_coding
	ENST00000379068 (POLA1-005)	24693919-24996986	protein_coding
	ENST00000480125 (POLA1-002)	24745503-24810781	processed_transcript
	ENST00000493342 (POLA1-003)	24726933-24734353	processed_transcript
	ENST00000494204 (POLA1-004)	24812830-24841983	processed_transcript
	ENST00000611764 (POLA1-201)	24693947-24996983	protein_coding
ENSG00000102230 (PCYT1B) phosphate cytidylyltransferase 1, choline, beta	ENST00000356768 (PCYT1B-005)	24561842-24647158	protein_coding
	ENST00000379144 (PCYT1B-004)	24561842-24647236	protein_coding
	ENST00000379145 (PCYT1B-003)	24558087-24672677	protein_coding
	ENST00000496020 (PCYT1B-001)	24562401-24647038	nonsense_mediated_decay
ENSG00000176812 (RP11-629O4.1)	ENST00000433306 (RP11-629O4.1-001)	25194381-25195207	processed_pseudogene
ENSG00000214111 (RP1-258N20.3)	ENST00000438281 (RP1-258N20.3-001)	25029545-25030235	processed_pseudogene
ENSG00000232472 (EEF1B2P3) eukaryotic translation elongation factor 1 beta 2 pseudogene 3	ENST00000447718 (EEF1B2P3-001)	24788392-24789069	processed_pseudogene
ENSG00000236836 (PCYT1B-AS1) PCYT1B antisense RNA 1	ENST00000432626 (PCYT1B-AS1-001)	24650073-24658237	antisense
ENSG00000240439 (RN7SL91P) RNA, 7SL, cytoplasmic 91, pseudogene	ENST00000469313 (RN7SL91P-201)	25060649-25060939	misc_RNA

CIL_0008NM_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
hs119	VISTA	10090	X:93107742-93710584
Gene	Transcript	Position	Biotype
ENSMUSG00000006678 (Pola1) polymerase (DNA directed), alpha 1	ENSMUST00000006856 (Pola1-001)	93304767-93632155	protein_coding
	ENSMUST00000124236 (Pola1-002)	93623298-93632115	processed_transcript
	ENSMUST00000127718 (Pola1-003)	93623076-93632143	retained_intron
	ENSMUST00000142479 (Pola1-004)	93480490-93490946	processed_transcript
ENSMUSG00000035246 (Pcyt1b) phosphate cytidylyltransferase 1, choline, beta isoform	ENSMUST00000045898 (Pcyt1b-001)	93675102-93749951	protein_coding
	ENSMUST00000113933 (Pcyt1b-003)	93654863-93749951	protein_coding
	ENSMUST00000146263 (Pcyt1b-002)	93731562-93734856	processed_transcript
ENSMUSG00000035277 (Arx) aristaless related homeobox	ENSMUST00000046565 (Arx-001)	93286529-93298357	protein_coding
	ENSMUST00000113947 (Arx-002)	93286522-93298357	protein_coding
	ENSMUST00000187010 (Arx-003)	93286445-93288382	retained_intron
ENSMUSG00000083207 (Gm14780) predicted gene 14780	ENSMUST00000118387 (Gm14780-001)	93527573-93530309	processed_pseudogene
ENSMUSG00000088445 (Gm23557) predicted gene, 23557	ENSMUST00000157820 (Gm23557-201)	93573731-93573868	snoRNA
ENSMUSG00000095110 (1700003E24Rik) RIKEN cDNA 1700003E24 gene	ENSMUST00000088134 (1700003E24Rik-001)	93156154-93156873	protein_coding
ENSMUSG00000096153 (BC061195) cDNA sequence BC061195	ENSMUST00000088133 (BC061195-001)	93183227-93183946	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000004848

ENST00000379044

0.018±0.00

0.092±0.00

N/A

2.037±0.74

0.394±0.00

0.072±0.05

N/A

0.087±0.00

N/A

0.496±0.46

2.377±1.68

23.275±25.60

0.217±0.01

8.552±4.98

ENSG00000101868

ENST00000379059

1.853±0.00

0.894±0.00

N/A

0.909±0.00

1.600±0.00

1.330±0.05

N/A

1.696±0.00

0.149±0.00

N/A

0.906±0.00

0.534±0.18

3.328±0.00

ENST00000379068

N/A

0.692±0.00

0.447±0.00

0.159±0.00

N/A

1.002±0.25

0.811±0.63

N/A

0.786±0.00

1.386±0.21

1.284±0.00

2.760±1.26

1.884±0.22

1.603±0.00

ENST00000480125

N/A

ENST00000493342

N/A

ENST00000494204

N/A

1.700±0.00

N/A

ENST00000611764

N/A

0.456±0.00

N/A

0.321±0.00

0.242±0.00

N/A

0.499±0.00

0.398±0.00

N/A

ENSG00000102230

ENST00000356768

N/A

0.043±0.00

N/A

2.921±0.18

ENST00000379144

N/A

0.160±0.00

N/A

0.406±0.23

2.243±0.46

ENST00000379145

N/A

0.094±0.00

4.440±0.00

0.074±0.07

N/A

0.053±0.03

N/A

0.042±0.03

N/A

0.156±0.19

0.407±0.00

1.718±0.00

ENST00000496020

N/A

0.080±0.04

0.596±0.00

12.994±0.00

ENSG00000176812

ENST00000433306

0.020±0.00

0.022±0.00

N/A

0.084±0.00

N/A

ENSG00000214111

ENST00000438281

N/A

0.026±0.00

0.037±0.00

0.039±0.00

ENSG00000232472

ENST00000447718

0.081±0.00

0.283±0.00

N/A

0.088±0.00

1.224±0.00

0.268±0.00

N/A

0.159±0.04

0.059±0.00

0.085±0.00

0.115±0.00

0.675±0.53

0.156±0.08

0.048±0.00

ENSG00000236836

ENST00000432626

N/A

0.512±0.00

ENSG00000240439

ENST00000469313

0.053±0.00

0.165±0.00

N/A

0.112±0.00

0.255±0.00

N/A

0.385±0.00

N/A

0.156±0.00

0.049±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000006678

ENSMUST00000006856

0.504±0.24

0.304±0.08

1.048±0.12

1.180±0.50

0.262±0.10

0.462±0.13

0.256±0.14

0.307±0.05

2.317±2.64

0.436±0.04

0.142±0.04

1.354±1.41

2.278±1.80

0.236±0.11

ENSMUST00000124236

N/A

0.586±0.00

N/A

0.209±0.00

0.547±0.08

N/A

0.322±0.00

ENSMUST00000127718

N/A

0.081±0.00

N/A

0.130±0.00

N/A

0.158±0.00

N/A

ENSMUST00000142479

N/A

ENSMUSG00000035246

ENSMUST00000045898

0.236±0.12

0.251±0.01

0.101±0.01

4.100±1.74

0.334±0.01

0.206±0.00

0.058±0.02

0.008±0.00

4.935±2.01

0.259±0.09

0.040±0.02

1.299±0.43

0.311±0.04

0.147±0.02

ENSMUST00000113933

0.538±0.34

0.171±0.09

N/A

3.664±0.00

0.252±0.00

0.233±0.11

0.019±0.00

0.041±0.02

0.027±0.01

0.278±0.02

0.025±0.00

0.910±0.31

0.151±0.04

0.446±0.16

ENSMUST00000146263

N/A

0.216±0.00

9.307±0.00

1.446±0.00

3.933±0.00

ENSMUSG00000035277

ENSMUST00000046565

0.013±0.00

0.247±0.01

N/A

12.144±10.43

N/A

0.202±0.00

N/A

0.077±0.02

N/A

0.106±0.05

5.588±1.74

N/A

0.478±0.10

ENSMUST00000113947

0.015±0.01

0.243±0.04

N/A

7.353±4.26

0.034±0.01

0.205±0.07

0.011±0.00

0.034±0.00

0.020±0.01

0.027±0.00

0.060±0.03

9.188±2.28

0.012±0.00

0.366±0.16

ENSMUST00000187010

0.012±0.00

N/A

0.330±0.00

N/A

0.022±0.00

N/A

0.026±0.00

N/A

ENSMUSG00000083207

ENSMUST00000118387

0.102±0.00

N/A

0.030±0.00

0.012±0.00

0.028±0.00

0.064±0.03

N/A

0.028±0.00

0.145±0.12

0.011±0.00

N/A

0.063±0.04

N/A

ENSMUSG00000088445

ENSMUST00000157820

N/A

4.177±0.00

N/A

ENSMUSG00000095110

ENSMUST00000088134

N/A

0.034±0.00

N/A

0.019±0.00

N/A

0.261±0.20

N/A

13.584±5.51

ENSMUSG00000096153

ENSMUST00000088133

N/A

0.087±0.00

0.019±0.00

N/A

0.462±0.00

N/A

15.156±2.85

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

Loading