| Source ID |
Type |
Tax ID |
Position |
| hs1127 |
VISTA |
10090 |
12:47164984-47766845  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0008O0_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000222899' => null,
'ENSG00000257185' => null,
'ENSG00000257612' => null,
'ENSG00000257842' => 'NOVA1 antisense RNA 1 (head to head)',
'ENSG00000257845' => null,
'ENSG00000258081' => null,
'ENSG00000258932' => null,
'ENSG00000265165' => 'microRNA 4307'
),
'gene_name_arr' => array(
'ENSG00000222899' => 'AL110292.1',
'ENSG00000257185' => 'RP11-626P14.2',
'ENSG00000257612' => 'RP11-384J4.1',
'ENSG00000257842' => 'NOVA1-AS1',
'ENSG00000257845' => 'RP11-626P14.1',
'ENSG00000258081' => 'RP11-384J4.2',
'ENSG00000258932' => 'CTD-3006G17.2',
'ENSG00000265165' => 'MIR4307'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 14 => 'Breast',
(int) 18 => 'Colon',
(int) 20 => 'Heart',
(int) 24 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 35 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000410967' => array(
'start' => '26927653',
'end' => '26927775',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL110292.1-201'
),
'ENST00000548335' => array(
'start' => '26809417',
'end' => '26820703',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-001'
),
'ENST00000548385' => array(
'start' => '26816968',
'end' => '26836458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-002'
),
'ENST00000548170' => array(
'start' => '26873133',
'end' => '26914743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-001'
),
'ENST00000552926' => array(
'start' => '26873163',
'end' => '26873652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-002'
),
'ENST00000547786' => array(
'start' => '26598412',
'end' => '26664407',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-001'
),
'ENST00000548328' => array(
'start' => '26735354',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-004'
),
'ENST00000552101' => array(
'start' => '26782168',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-003'
),
'ENST00000552826' => array(
'start' => '26637241',
'end' => '26806381',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-002'
),
'ENST00000549330' => array(
'start' => '26775495',
'end' => '26822107',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.1-001'
),
'ENST00000550024' => array(
'start' => '26836728',
'end' => '26933772',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-001'
),
'ENST00000552303' => array(
'start' => '26843452',
'end' => '27160420',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-002'
),
'ENST00000553392' => array(
'start' => '27259142',
'end' => '27673230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-002'
),
'ENST00000554904' => array(
'start' => '27321826',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-003'
),
'ENST00000555797' => array(
'start' => '27322079',
'end' => '27845286',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-004'
),
'ENST00000556395' => array(
'start' => '27258717',
'end' => '27259166',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'CTD-3006G17.2-001'
),
'ENST00000556890' => array(
'start' => '27321922',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-005'
),
'ENST00000582802' => array(
'start' => '26908642',
'end' => '26908725',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4307-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
'ENSG00000257185' => array(
[maximum depth reached]
),
'ENSG00000257612' => array(
[maximum depth reached]
),
'ENSG00000257842' => array(
[maximum depth reached]
),
'ENSG00000257845' => array(
[maximum depth reached]
),
'ENSG00000258081' => array(
[maximum depth reached]
),
'ENSG00000258932' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Kidney',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Colon',
(int) 10 => 'Brain',
(int) 11 => 'Brain',
(int) 12 => 'Kidney',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Heart',
(int) 40 => 'Placenta',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Placenta',
(int) 48 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000222899' => null,
'ENSG00000257185' => null,
'ENSG00000257612' => null,
'ENSG00000257842' => 'NOVA1 antisense RNA 1 (head to head)',
'ENSG00000257845' => null,
'ENSG00000258081' => null,
'ENSG00000258932' => null,
'ENSG00000265165' => 'microRNA 4307'
)
$gene_name_arr = array(
'ENSG00000222899' => 'AL110292.1',
'ENSG00000257185' => 'RP11-626P14.2',
'ENSG00000257612' => 'RP11-384J4.1',
'ENSG00000257842' => 'NOVA1-AS1',
'ENSG00000257845' => 'RP11-626P14.1',
'ENSG00000258081' => 'RP11-384J4.2',
'ENSG00000258932' => 'CTD-3006G17.2',
'ENSG00000265165' => 'MIR4307'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0001',
'tax_id' => '9606',
'chromosome' => '14',
'seq_start' => '26784580',
'seq_end' => '27386455',
'region_length' => '601875',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0002',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '47164984',
'seq_end' => '47766845',
'region_length' => '601861',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 14 => 'Breast',
(int) 18 => 'Colon',
(int) 20 => 'Heart',
(int) 24 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 35 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000410967' => array(
'start' => '26927653',
'end' => '26927775',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL110292.1-201'
),
'ENST00000548335' => array(
'start' => '26809417',
'end' => '26820703',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-001'
),
'ENST00000548385' => array(
'start' => '26816968',
'end' => '26836458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-002'
),
'ENST00000548170' => array(
'start' => '26873133',
'end' => '26914743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-001'
),
'ENST00000552926' => array(
'start' => '26873163',
'end' => '26873652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-002'
),
'ENST00000547786' => array(
'start' => '26598412',
'end' => '26664407',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-001'
),
'ENST00000548328' => array(
'start' => '26735354',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-004'
),
'ENST00000552101' => array(
'start' => '26782168',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-003'
),
'ENST00000552826' => array(
'start' => '26637241',
'end' => '26806381',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-002'
),
'ENST00000549330' => array(
'start' => '26775495',
'end' => '26822107',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.1-001'
),
'ENST00000550024' => array(
'start' => '26836728',
'end' => '26933772',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-001'
),
'ENST00000552303' => array(
'start' => '26843452',
'end' => '27160420',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-002'
),
'ENST00000553392' => array(
'start' => '27259142',
'end' => '27673230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-002'
),
'ENST00000554904' => array(
'start' => '27321826',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-003'
),
'ENST00000555797' => array(
'start' => '27322079',
'end' => '27845286',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-004'
),
'ENST00000556395' => array(
'start' => '27258717',
'end' => '27259166',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'CTD-3006G17.2-001'
),
'ENST00000556890' => array(
'start' => '27321922',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-005'
),
'ENST00000582802' => array(
'start' => '26908642',
'end' => '26908725',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4307-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
'ENSG00000257185' => array(
[maximum depth reached]
),
'ENSG00000257612' => array(
[maximum depth reached]
),
'ENSG00000257842' => array(
[maximum depth reached]
),
'ENSG00000257845' => array(
[maximum depth reached]
),
'ENSG00000258081' => array(
[maximum depth reached]
),
'ENSG00000258932' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Kidney',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Colon',
(int) 10 => 'Brain',
(int) 11 => 'Brain',
(int) 12 => 'Kidney',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Heart',
(int) 40 => 'Placenta',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Placenta',
(int) 48 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0002',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '47164984',
'seq_end' => '47766845',
'region_length' => '601861',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
)
$gene_el = array(
'ENST00000553392' => array(
'Brain' => array(
'average_FPKM' => '0.212',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
)
),
'ENST00000554904' => array(
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.10'
),
'Placenta' => array(
'average_FPKM' => '0.243',
'stddev_FPKM' => '0.06'
),
'Testis' => array(
'average_FPKM' => '0.878',
'stddev_FPKM' => '0.00'
)
),
'ENST00000555797' => array(
'Breast' => array(
'average_FPKM' => '0.069',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.162',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.035',
'stddev_FPKM' => '0.00'
)
),
'ENST00000556395' => array(
'Heart' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.01'
)
),
'ENST00000556890' => array(
'Adrenal' => array(
'average_FPKM' => '0.458',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.395',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.125',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.13'
),
'Testis' => array(
'average_FPKM' => '0.449',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000258932'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.458',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.395',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.125',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.13'
),
'Testis' => array(
'average_FPKM' => '0.449',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000556890'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000222899' => null,
'ENSG00000257185' => null,
'ENSG00000257612' => null,
'ENSG00000257842' => 'NOVA1 antisense RNA 1 (head to head)',
'ENSG00000257845' => null,
'ENSG00000258081' => null,
'ENSG00000258932' => null,
'ENSG00000265165' => 'microRNA 4307'
),
'gene_name_arr' => array(
'ENSG00000222899' => 'AL110292.1',
'ENSG00000257185' => 'RP11-626P14.2',
'ENSG00000257612' => 'RP11-384J4.1',
'ENSG00000257842' => 'NOVA1-AS1',
'ENSG00000257845' => 'RP11-626P14.1',
'ENSG00000258081' => 'RP11-384J4.2',
'ENSG00000258932' => 'CTD-3006G17.2',
'ENSG00000265165' => 'MIR4307'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 14 => 'Breast',
(int) 18 => 'Colon',
(int) 20 => 'Heart',
(int) 24 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 35 => 'Placenta',
(int) 41 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000410967' => array(
'start' => '26927653',
'end' => '26927775',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL110292.1-201'
),
'ENST00000548335' => array(
'start' => '26809417',
'end' => '26820703',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-001'
),
'ENST00000548385' => array(
'start' => '26816968',
'end' => '26836458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-002'
),
'ENST00000548170' => array(
'start' => '26873133',
'end' => '26914743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-001'
),
'ENST00000552926' => array(
'start' => '26873163',
'end' => '26873652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-002'
),
'ENST00000547786' => array(
'start' => '26598412',
'end' => '26664407',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-001'
),
'ENST00000548328' => array(
'start' => '26735354',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-004'
),
'ENST00000552101' => array(
'start' => '26782168',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-003'
),
'ENST00000552826' => array(
'start' => '26637241',
'end' => '26806381',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-002'
),
'ENST00000549330' => array(
'start' => '26775495',
'end' => '26822107',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.1-001'
),
'ENST00000550024' => array(
'start' => '26836728',
'end' => '26933772',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-001'
),
'ENST00000552303' => array(
'start' => '26843452',
'end' => '27160420',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-002'
),
'ENST00000553392' => array(
'start' => '27259142',
'end' => '27673230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-002'
),
'ENST00000554904' => array(
'start' => '27321826',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-003'
),
'ENST00000555797' => array(
'start' => '27322079',
'end' => '27845286',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-004'
),
'ENST00000556395' => array(
'start' => '27258717',
'end' => '27259166',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'CTD-3006G17.2-001'
),
'ENST00000556890' => array(
'start' => '27321922',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-005'
),
'ENST00000582802' => array(
'start' => '26908642',
'end' => '26908725',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4307-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
'ENSG00000257185' => array(
[maximum depth reached]
),
'ENSG00000257612' => array(
[maximum depth reached]
),
'ENSG00000257842' => array(
[maximum depth reached]
),
'ENSG00000257845' => array(
[maximum depth reached]
),
'ENSG00000258081' => array(
[maximum depth reached]
),
'ENSG00000258932' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Kidney',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Colon',
(int) 10 => 'Brain',
(int) 11 => 'Brain',
(int) 12 => 'Kidney',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Heart',
(int) 40 => 'Placenta',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Placenta',
(int) 48 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000222899' => null,
'ENSG00000257185' => null,
'ENSG00000257612' => null,
'ENSG00000257842' => 'NOVA1 antisense RNA 1 (head to head)',
'ENSG00000257845' => null,
'ENSG00000258081' => null,
'ENSG00000258932' => null,
'ENSG00000265165' => 'microRNA 4307'
)
$gene_name_arr = array(
'ENSG00000222899' => 'AL110292.1',
'ENSG00000257185' => 'RP11-626P14.2',
'ENSG00000257612' => 'RP11-384J4.1',
'ENSG00000257842' => 'NOVA1-AS1',
'ENSG00000257845' => 'RP11-626P14.1',
'ENSG00000258081' => 'RP11-384J4.2',
'ENSG00000258932' => 'CTD-3006G17.2',
'ENSG00000265165' => 'MIR4307'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0001',
'tax_id' => '9606',
'chromosome' => '14',
'seq_start' => '26784580',
'seq_end' => '27386455',
'region_length' => '601875',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0002',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '47164984',
'seq_end' => '47766845',
'region_length' => '601861',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 14 => 'Breast',
(int) 18 => 'Colon',
(int) 20 => 'Heart',
(int) 24 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 35 => 'Placenta',
(int) 41 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000410967' => array(
'start' => '26927653',
'end' => '26927775',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL110292.1-201'
),
'ENST00000548335' => array(
'start' => '26809417',
'end' => '26820703',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-001'
),
'ENST00000548385' => array(
'start' => '26816968',
'end' => '26836458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.2-002'
),
'ENST00000548170' => array(
'start' => '26873133',
'end' => '26914743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-001'
),
'ENST00000552926' => array(
'start' => '26873163',
'end' => '26873652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.1-002'
),
'ENST00000547786' => array(
'start' => '26598412',
'end' => '26664407',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-001'
),
'ENST00000548328' => array(
'start' => '26735354',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-004'
),
'ENST00000552101' => array(
'start' => '26782168',
'end' => '26806467',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-003'
),
'ENST00000552826' => array(
'start' => '26637241',
'end' => '26806381',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NOVA1-AS1-002'
),
'ENST00000549330' => array(
'start' => '26775495',
'end' => '26822107',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-626P14.1-001'
),
'ENST00000550024' => array(
'start' => '26836728',
'end' => '26933772',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-001'
),
'ENST00000552303' => array(
'start' => '26843452',
'end' => '27160420',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-384J4.2-002'
),
'ENST00000553392' => array(
'start' => '27259142',
'end' => '27673230',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-002'
),
'ENST00000554904' => array(
'start' => '27321826',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-003'
),
'ENST00000555797' => array(
'start' => '27322079',
'end' => '27845286',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-004'
),
'ENST00000556395' => array(
'start' => '27258717',
'end' => '27259166',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'CTD-3006G17.2-001'
),
'ENST00000556890' => array(
'start' => '27321922',
'end' => '27673221',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CTD-3006G17.2-005'
),
'ENST00000582802' => array(
'start' => '26908642',
'end' => '26908725',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4307-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008O0_0001' => array(
'genes_in_region' => array(
'ENSG00000257185' => array(
[maximum depth reached]
),
'ENSG00000257612' => array(
[maximum depth reached]
),
'ENSG00000257842' => array(
[maximum depth reached]
),
'ENSG00000257845' => array(
[maximum depth reached]
),
'ENSG00000258081' => array(
[maximum depth reached]
),
'ENSG00000258932' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Kidney',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Colon',
(int) 10 => 'Brain',
(int) 11 => 'Brain',
(int) 12 => 'Kidney',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Breast',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Heart',
(int) 40 => 'Placenta',
(int) 41 => 'Adrenal',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Placenta',
(int) 48 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008O0_0002',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '47164984',
'seq_end' => '47766845',
'region_length' => '601861',
'region_type' => 'VISTA',
'el_id' => 'hs1127'
)
)
$gene_el = array(
'ENST00000553392' => array(
'Brain' => array(
'average_FPKM' => '0.212',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.00'
)
),
'ENST00000554904' => array(
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.10'
),
'Placenta' => array(
'average_FPKM' => '0.243',
'stddev_FPKM' => '0.06'
),
'Testis' => array(
'average_FPKM' => '0.878',
'stddev_FPKM' => '0.00'
)
),
'ENST00000555797' => array(
'Breast' => array(
'average_FPKM' => '0.069',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.162',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.035',
'stddev_FPKM' => '0.00'
)
),
'ENST00000556395' => array(
'Heart' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.01'
)
),
'ENST00000556890' => array(
'Adrenal' => array(
'average_FPKM' => '0.458',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.395',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.125',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.13'
),
'Testis' => array(
'average_FPKM' => '0.449',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000258932'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.458',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.395',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.125',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.065',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.13'
),
'Testis' => array(
'average_FPKM' => '0.449',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000556890'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(RP11-626P14.2)