C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008OJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm765 VISTA 9606 6:125040277-125641345
GeneTranscriptPositionBiotype
ENSG00000111906 (HDDC2)
HD domain containing 2 		ENST00000318787 (HDDC2-001) 125275350-125301974 nonsense_mediated_decay
ENST00000398153 (HDDC2-002) 125275886-125301975 protein_coding
ENST00000608284 (HDDC2-005) 125297487-125302078 protein_coding
ENST00000608295 (HDDC2-004) 125275882-125301937 protein_coding
ENST00000608456 (HDDC2-010) 125219962-125276217 processed_transcript
ENST00000608461 (HDDC2-007) 125276955-125301958 retained_intron
ENST00000608532 (HDDC2-008) 125277079-125293231 retained_intron
ENST00000609021 (HDDC2-003) 125275886-125279414 retained_intron
ENST00000609477 (HDDC2-009) 125221928-125301958 nonsense_mediated_decay
ENST00000609574 (HDDC2-006) 125300277-125302072 processed_transcript
ENSG00000111907 (TPD52L1)
tumor protein D52-like 1 		ENST00000304877 (TPD52L1-005) 125153649-125263497 protein_coding
ENST00000368388 (TPD52L1-004) 125153765-125264407 protein_coding
ENST00000368402 (TPD52L1-003) 125153733-125263497 protein_coding
ENST00000392482 (TPD52L1-002) 125203639-125263492 protein_coding
ENST00000392483 (TPD52L1-011) 125153849-125248475 retained_intron
ENST00000524679 (TPD52L1-009) 125219845-125263148 protein_coding
ENST00000527711 (TPD52L1-014) 125153793-125263226 protein_coding
ENST00000528193 (TPD52L1-013) 125153900-125263062 protein_coding
ENST00000530868 (TPD52L1-012) 125231207-125263250 processed_transcript
ENST00000532423 (TPD52L1-010) 125229067-125263038 retained_intron
ENST00000532429 (TPD52L1-007) 125154189-125263044 protein_coding
ENST00000532978 (TPD52L1-006) 125154189-125253799 retained_intron
ENST00000534000 (TPD52L1-001) 125153656-125264407 protein_coding
ENST00000534199 (TPD52L1-008) 125154381-125263125 protein_coding
ENST00000534368 (TPD52L1-015) 125119049-125248360 protein_coding
ENST00000571678 (TPD52L1-021) 125261011-125263496 retained_intron
ENST00000576089 (TPD52L1-022) 125259963-125263057 processed_transcript
ENSG00000226409 (RP11-735G4.1)
 ENST00000422227 (RP11-735G4.1-001) 125370211-125374324 antisense
ENSG00000228704 (RP11-138M12.1)
 ENST00000430672 (RP11-138M12.1-001) 125425627-125445183 lincRNA
ENSG00000237742 (RP11-624M8.1)
 ENST00000427852 (RP11-624M8.1-002) 125578567-125745028 antisense
ENST00000432121 (RP11-624M8.1-003) 125720343-125749186 antisense
ENST00000451660 (RP11-624M8.1-001) 125578567-125749186 antisense
ENST00000606001 (RP11-624M8.1-005) 125718236-125749190 antisense
ENST00000606334 (RP11-624M8.1-004) 125578558-125745610 antisense
CIL_0008OJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm765 VISTA 10090 10:30972653-31573675
GeneTranscriptPositionBiotype
ENSMUSG00000000295 (Hddc2)
HD domain containing 2 		ENSMUST00000000304 (Hddc2-001) 31313382-31328204 protein_coding
ENSMUST00000159194 (Hddc2-005) 31313472-31328184 nonsense_mediated_decay
ENSMUST00000159659 (Hddc2-004) 31320167-31328202 retained_intron
ENSMUST00000160447 (Hddc2-002) 31313407-31317843 retained_intron
ENSMUST00000162076 (Hddc2-003) 31313405-31317032 retained_intron
ENSMUSG00000000296 (Tpd52l1)
tumor protein D52-like 1 		ENSMUST00000000305 (Tpd52l1-201) 31332380-31445921 protein_coding
ENSMUSG00000039684 (Gm5422)
predicted pseudogene 5422 		ENSMUST00000050717 (Gm5422-201) 31248140-31251045 protein_coding
ENSMUSG00000063760 (Rnf217)
ring finger protein 217 		ENSMUST00000081989 (Rnf217-001) 31493193-31609184 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OJ_0001ENSG00000111906ENST00000318787ENST00000398153ENST00000608284ENST00000608295ENST00000608456ENST00000608461ENST00000608532ENST00000609021ENST00000609477ENST00000609574ENSG00000111907ENST00000304877ENST00000368388ENST00000368402ENST00000392482ENST00000392483ENST00000524679ENST00000527711ENST00000528193ENST00000530868ENST00000532423ENST00000532429ENST00000532978ENST00000534000ENST00000534199ENST00000534368ENST00000571678ENST00000576089ENSG00000226409ENST00000422227ENSG00000228704ENST00000430672ENSG00000237742ENST00000427852ENST00000432121ENST00000451660ENST00000606001ENST00000606334CIL_0008OJ_0002ENSMUSG00000000295ENSMUST00000000304ENSMUST00000159194ENSMUST00000159659ENSMUST00000160447ENSMUST00000162076ENSMUSG00000000296ENSMUST00000000305ENSMUSG00000039684ENSMUST00000050717ENSMUSG00000063760ENSMUST00000081989
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OJ_0001ENSG00000111906ENST00000318787ENST00000398153ENST00000608461ENST00000609477ENSG00000111907ENST00000304877ENST00000368402ENST00000392483ENST00000527711ENST00000528193ENST00000532423ENST00000532978ENSG00000226409ENST00000422227ENSG00000228704ENST00000430672ENSG00000237742ENST00000427852ENST00000432121ENST00000451660ENST00000606001ENST00000606334CIL_0008OJ_0002ENSMUSG00000000295ENSMUST00000000304ENSMUST00000159194ENSMUST00000159659ENSMUST00000160447ENSMUST00000162076ENSMUSG00000000296ENSMUST00000000305ENSMUSG00000039684ENSMUST00000050717ENSMUSG00000063760ENSMUST00000081989
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111906 ENST00000318787 N/A N/A 2.176±0.00 7.862±0.00 N/A 1.973±0.00 2.066±0.00 N/A 3.869±0.00 4.435±0.00 4.514±0.00 4.934±0.00 3.330±0.00 N/A
ENST00000398153 24.964±0.00 59.618±0.00 4.632±0.00 34.447±25.43 26.035±19.31 18.794±14.63 23.015±16.92 26.209±24.00 6.360±0.20 17.406±8.28 20.019±11.13 39.451±16.22 21.006±3.15 61.786±0.35
ENST00000608284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.475±0.00 19.985±0.00 N/A
ENST00000608532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609477 N/A N/A N/A N/A 6.880±0.00 N/A N/A N/A N/A N/A 16.789±0.00 N/A N/A N/A
ENST00000609574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111907 ENST00000304877 N/A N/A N/A 3.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368402 11.252±0.00 N/A N/A 25.208±0.00 14.837±0.00 10.981±8.73 11.975±10.27 13.557±11.01 13.909±0.00 6.445±0.00 13.220±0.00 20.385±7.35 6.244±0.53 22.037±0.00
ENST00000392482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392483 N/A N/A N/A N/A N/A N/A N/A N/A 7.418±0.00 N/A N/A N/A N/A N/A
ENST00000524679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527711 N/A N/A 1.528±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528193 N/A N/A N/A N/A N/A N/A N/A 3.756±0.00 N/A N/A 9.143±0.00 N/A N/A N/A
ENST00000530868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532423 N/A N/A N/A N/A N/A N/A N/A 4.220±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532978 N/A N/A 0.860±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226409 ENST00000422227 0.015±0.00 0.090±0.00 N/A N/A 0.101±0.00 0.040±0.00 0.014±0.00 N/A 0.142±0.00 0.524±0.00 0.198±0.00 0.066±0.04 0.068±0.03 0.194±0.09
ENSG00000228704 ENST00000430672 N/A 0.157±0.00 N/A N/A 0.103±0.00 0.572±0.00 N/A N/A N/A N/A N/A 1.678±0.00 N/A 0.253±0.02
ENSG00000237742 ENST00000427852 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 0.348±0.00 0.295±0.11 N/A N/A
ENST00000432121 N/A N/A N/A 0.120±0.00 0.098±0.00 N/A N/A N/A N/A N/A 0.274±0.00 N/A 0.124±0.01 N/A
ENST00000451660 N/A N/A N/A N/A N/A N/A N/A N/A 0.312±0.00 N/A N/A 0.135±0.09 N/A 0.260±0.17
ENST00000606001 N/A 0.016±0.00 0.242±0.00 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A 0.016±0.00
ENST00000606334 0.090±0.00 0.140±0.00 N/A 0.150±0.00 N/A N/A N/A 0.740±0.00 N/A N/A N/A 0.286±0.00 N/A 0.246±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000295 ENSMUST00000000304 9.501±3.48 1.914±0.78 7.421±0.15 7.471±2.18 4.077±1.44 3.632±0.74 1.310±0.29 5.134±0.81 4.115±4.01 3.095±1.08 7.650±1.11 21.557±10.87 6.664±2.01 2.646±0.52
ENSMUST00000159194 N/A N/A N/A N/A N/A N/A N/A N/A 0.228±0.03 N/A N/A N/A N/A N/A
ENSMUST00000159659 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.01 N/A N/A 7.966±0.00 N/A 3.153±0.00
ENSMUST00000160447 0.822±0.02 0.553±0.21 N/A 0.280±0.00 0.230±0.06 0.389±0.16 N/A N/A 0.035±0.01 0.253±0.08 N/A 2.266±0.74 N/A N/A
ENSMUST00000162076 N/A N/A N/A N/A 1.093±0.52 1.361±0.23 0.218±0.03 N/A N/A 1.013±0.00 N/A 8.897±1.06 N/A N/A
ENSMUSG00000000296 ENSMUST00000000305 0.742±0.48 14.026±10.77 0.697±0.18 2.050±0.11 0.733±0.17 6.070±2.73 0.763±0.40 3.792±2.20 1.148±1.59 0.283±0.05 2.007±0.31 4.947±2.55 0.563±0.25 5.819±1.96
ENSMUSG00000039684 ENSMUST00000050717 0.504±0.05 0.180±0.05 0.186±0.17 0.470±0.31 0.203±0.06 0.146±0.09 0.282±0.05 0.154±0.04 0.158±0.19 0.134±0.03 0.025±0.01 0.652±0.52 0.038±0.02 0.435±0.20
ENSMUSG00000063760 ENSMUST00000081989 1.853±0.98 6.329±0.51 1.546±0.12 1.237±0.51 2.361±1.06 2.011±0.61 0.769±0.11 0.975±0.23 1.947±1.56 2.987±0.82 1.073±0.08 6.908±3.87 0.427±0.36 0.386±0.18

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