C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008OS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs807 VISTA 9606 7:21751744-22352939
GeneTranscriptPositionBiotype
ENSG00000136237 (RAPGEF5)
Rap guanine nucleotide exchange factor (GEF) 5 		ENST00000344041 (RAPGEF5-201) 22118291-22356914 protein_coding
ENST00000401957 (RAPGEF5-001) 22118238-22193909 protein_coding
ENST00000405243 (RAPGEF5-002) 22192177-22357144 protein_coding
ENST00000420196 (RAPGEF5-009) 22167070-22220238 protein_coding
ENST00000451559 (RAPGEF5-007) 22157864-22193744 nonsense_mediated_decay
ENST00000458533 (RAPGEF5-008) 22154570-22194763 protein_coding
ENST00000468825 (RAPGEF5-010) 22139757-22145266 retained_intron
ENST00000471484 (RAPGEF5-004) 22308447-22356225 processed_transcript
ENST00000475788 (RAPGEF5-005) 22191439-22291241 processed_transcript
ENST00000488366 (RAPGEF5-006) 22125232-22136072 processed_transcript
ENST00000497668 (RAPGEF5-003) 22356310-22356910 processed_transcript
ENST00000620335 (RAPGEF5-202) 22118309-22193735 protein_coding
ENSG00000164649 (CDCA7L)
cell division cycle associated 7-like 		ENST00000356195 (CDCA7L-006) 21900900-21945878 protein_coding
ENST00000373934 (CDCA7L-010) 21901799-21945884 protein_coding
ENST00000406877 (CDCA7L-001) 21900901-21946084 protein_coding
ENST00000435031 (CDCA7L-002) 21908421-21944873 protein_coding
ENST00000435717 (CDCA7L-008) 21902654-21904259 protein_coding
ENST00000447180 (CDCA7L-007) 21908367-21945878 protein_coding
ENST00000457951 (CDCA7L-009) 21908201-21945903 protein_coding
ENST00000465490 (CDCA7L-003) 21904150-21916897 processed_transcript
ENST00000488845 (CDCA7L-004) 21900901-21905709 retained_intron
ENST00000489669 (CDCA7L-005) 21903759-21905575 retained_intron
ENSG00000251993 (RNA5SP227)
RNA, 5S ribosomal pseudogene 227 		ENST00000516184 (RNA5SP227-201) 22298594-22298706 rRNA
CIL_0008OS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs807 VISTA 10090 12:117505673-118106846
GeneTranscriptPositionBiotype
ENSMUSG00000018581 (Dnah11)
dynein, axonemal, heavy chain 11 		ENSMUST00000084806 (Dnah11-001) 117877982-118199043 protein_coding
ENSMUST00000175662 (Dnah11-004) 117903214-117915738 retained_intron
ENSMUST00000176239 (Dnah11-003) 117903230-117915964 processed_transcript
ENSMUST00000176756 (Dnah11-002) 117877982-118060303 nonsense_mediated_decay
ENSMUSG00000021175 (Cdca7l)
cell division cycle associated 7 like 		ENSMUST00000021592 (Cdca7l-001) 117843515-117878706 protein_coding
ENSMUST00000176499 (Cdca7l-002) 117804289-117870047 processed_transcript
ENSMUST00000176735 (Cdca7l-004) 117843884-117873757 protein_coding
ENSMUST00000177339 (Cdca7l-003) 117843888-117875627 protein_coding
ENSMUSG00000041992 (Rapgef5)
Rap guanine nucleotide exchange factor (GEF) 5 		ENSMUST00000109691 (Rapgef5-201) 117516479-117756978 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OS_0001ENSG00000136237ENST00000344041ENST00000401957ENST00000405243ENST00000420196ENST00000451559ENST00000458533ENST00000468825ENST00000471484ENST00000475788ENST00000488366ENST00000497668ENST00000620335ENSG00000164649ENST00000356195ENST00000373934ENST00000406877ENST00000435031ENST00000435717ENST00000447180ENST00000457951ENST00000465490ENST00000488845ENST00000489669ENSG00000251993ENST00000516184CIL_0008OS_0002ENSMUSG00000018581ENSMUST00000084806ENSMUST00000175662ENSMUST00000176239ENSMUST00000176756ENSMUSG00000021175ENSMUST00000021592ENSMUST00000176499ENSMUST00000176735ENSMUST00000177339ENSMUSG00000041992ENSMUST00000109691
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OS_0001ENSG00000136237ENST00000344041ENST00000401957ENST00000405243ENST00000420196ENST00000620335ENSG00000164649ENST00000356195ENST00000373934ENST00000406877ENST00000435031ENST00000447180ENST00000457951ENST00000465490ENST00000488845ENSG00000251993ENST00000516184CIL_0008OS_0002ENSMUSG00000018581ENSMUST00000084806ENSMUST00000175662ENSMUST00000176756ENSMUSG00000021175ENSMUST00000021592ENSMUST00000176735ENSMUST00000177339ENSMUSG00000041992ENSMUST00000109691
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136237 ENST00000344041 9.383±0.00 2.184±0.00 N/A 6.921±3.25 1.647±0.95 1.824±0.43 0.356±0.00 1.877±0.00 N/A N/A N/A 1.960±1.23 0.805±0.12 1.067±0.14
ENST00000401957 N/A N/A N/A 11.930±6.47 1.999±0.00 2.133±0.00 0.456±0.00 N/A 0.534±0.00 N/A 0.438±0.00 0.758±0.41 N/A N/A
ENST00000405243 N/A N/A N/A N/A 1.998±0.00 N/A N/A N/A 0.983±0.00 N/A 0.237±0.00 N/A N/A N/A
ENST00000420196 N/A N/A 5.482±0.00 N/A 12.688±0.00 9.548±0.00 5.484±0.00 9.589±0.00 7.800±0.00 52.085±0.00 N/A 7.544±0.00 N/A N/A
ENST00000451559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620335 4.143±0.00 N/A N/A 5.393±0.00 N/A N/A 0.537±0.00 2.058±0.00 N/A 2.047±0.00 N/A N/A N/A N/A
ENSG00000164649 ENST00000356195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.849±1.83 0.749±0.00 13.013±0.00
ENST00000373934 N/A N/A N/A 0.959±0.00 0.849±0.00 2.048±0.00 N/A N/A N/A N/A 0.571±0.00 N/A N/A N/A
ENST00000406877 2.118±0.00 4.352±0.00 N/A 0.896±0.72 1.753±0.69 2.940±0.30 3.431±2.75 0.393±0.00 0.473±0.00 2.584±0.00 0.157±0.00 4.191±2.09 1.086±0.08 8.479±0.00
ENST00000435031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.528±0.00 N/A N/A N/A
ENST00000435717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447180 N/A N/A N/A N/A N/A 5.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A N/A
ENST00000465490 N/A N/A N/A 1.621±0.00 2.707±0.00 N/A N/A N/A N/A N/A 0.705±0.00 N/A N/A N/A
ENST00000488845 N/A 1.161±0.00 N/A 0.559±0.00 1.190±0.00 N/A N/A 0.335±0.00 0.694±0.29 N/A 1.174±0.00 4.266±0.00 1.701±0.24 N/A
ENST00000489669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251993 ENST00000516184 N/A 0.805±0.00 N/A N/A N/A N/A 0.368±0.00 N/A N/A N/A N/A N/A 0.802±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018581 ENSMUST00000084806 N/A N/A N/A 0.063±0.02 N/A N/A 0.012±0.00 N/A 0.024±0.01 0.465±0.18 N/A 0.408±0.17 N/A 0.196±0.06
ENSMUST00000175662 N/A N/A N/A 0.849±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176756 N/A 0.099±0.01 N/A 0.249±0.06 0.219±0.00 N/A 0.033±0.02 N/A 0.053±0.02 0.561±0.21 0.008±0.00 0.590±0.24 0.220±0.11 0.228±0.04
ENSMUSG00000021175 ENSMUST00000021592 2.508±0.77 N/A 1.398±0.66 1.144±0.76 1.173±0.55 1.123±0.23 0.073±0.04 0.773±0.15 2.355±2.10 0.973±0.13 0.055±0.06 2.156±0.79 1.696±1.44 1.040±0.45
ENSMUST00000176499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176735 N/A N/A N/A 1.378±0.00 N/A N/A 0.040±0.00 N/A 0.477±0.00 N/A N/A 28.022±0.00 20.868±17.76 4.944±0.00
ENSMUST00000177339 N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A 0.049±0.01 N/A 6.135±0.00 N/A
ENSMUSG00000041992 ENSMUST00000109691 1.389±0.00 1.774±0.97 2.268±0.24 4.424±0.00 1.340±0.39 0.808±0.15 N/A 1.713±0.53 0.578±0.29 18.501±0.00 0.391±0.00 0.991±0.88 2.078±0.11 3.183±1.32

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