C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm386 VISTA 9606 14:53513747-54115356
GeneTranscriptPositionBiotype
ENSG00000125378 (BMP4)
bone morphogenetic protein 4 		ENST00000245451 (BMP4-001) 53949736-53956811 protein_coding
ENST00000417573 (BMP4-201) 53949739-53954552 protein_coding
ENST00000558489 (BMP4-005) 53955466-53956648 processed_transcript
ENST00000558961 (BMP4-007) 53950622-53952147 protein_coding
ENST00000558984 (BMP4-003) 53949741-53953455 protein_coding
ENST00000559087 (BMP4-002) 53949736-53956811 protein_coding
ENST00000559501 (BMP4-006) 53950255-53953429 protein_coding
ENST00000559642 (BMP4-004) 53951892-53958761 protein_coding
ENST00000609748 (BMP4-008) 53951423-53951880 protein_coding
ENSG00000224004 (ATP5C1P1)
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 		ENST00000441945 (ATP5C1P1-001) 53991101-53991995 processed_pseudogene
ENSG00000225680 (AL163953.2)
 ENST00000436530 (AL163953.2-001) 53599832-53614026 lincRNA
ENSG00000226132 (RPS3AP46)
ribosomal protein S3a pseudogene 46 		ENST00000448352 (RPS3AP46-001) 53612724-53613405 processed_pseudogene
ENSG00000231922 (AL138479.3)
 ENST00000426913 (AL138479.3-001) 53917270-53917753 processed_pseudogene
ENSG00000235269 (AL162759.1)
 ENST00000418927 (AL162759.1-001) 53768942-53850882 lincRNA
ENSG00000237356 (AL163953.3)
 ENST00000425648 (AL163953.3-002) 53369381-53526242 lincRNA
ENST00000435322 (AL163953.3-003) 53217891-53369501 lincRNA
ENST00000454942 (AL163953.3-004) 53169054-53326711 lincRNA
ENST00000456100 (AL163953.3-001) 53217712-53687258 lincRNA
ENST00000612453 (AL163953.3-005) 53590943-53591374 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008PV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm386 VISTA 10090 14:45947450-46549128
GeneTranscriptPositionBiotype
ENSMUSG00000021835 (Bmp4)
bone morphogenetic protein 4 		ENSMUST00000074077 (Bmp4-001) 46383520-46390669 protein_coding
ENSMUST00000100676 (Bmp4-002) 46383707-46390550 protein_coding
ENSMUST00000135408 (Bmp4-003) 46386996-46390535 retained_intron
ENSMUSG00000044285 (Gm1821)
predicted gene 1821 		ENSMUST00000111388 (Gm1821-001) 46084126-46084815 processed_pseudogene
ENSMUSG00000079261 (Gm15217)
predicted gene 15217 		ENSMUST00000111826 (Gm15217-001) 46379467-46383608 protein_coding
ENSMUST00000141358 (Gm15217-002) 46379414-46383418 processed_transcript
ENSMUST00000147092 (Gm15217-003) 46381127-46383368 processed_transcript
ENSMUSG00000083169 (Gm6580)
predicted gene 6580 		ENSMUST00000117504 (Gm6580-001) 46027428-46028784 processed_pseudogene
ENSMUSG00000085866 (Gm15218)
predicted gene 15218 		ENSMUST00000131006 (Gm15218-001) 45754689-45993170 lincRNA
ENSMUSG00000086168 (Gm15221)
predicted gene 15221 		ENSMUST00000144439 (Gm15221-001) 46436855-46454535 lincRNA
ENSMUSG00000086746 (Gm15222)
predicted gene 15222 		ENSMUST00000127359 (Gm15222-001) 46387519-46389282 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PV_0001ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENST00000609748ENSG00000224004ENST00000441945ENSG00000225680ENST00000436530ENSG00000226132ENST00000448352ENSG00000231922ENST00000426913ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0008PV_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000044285ENSMUST00000111388ENSMUSG00000079261ENSMUST00000111826ENSMUST00000141358ENSMUST00000147092ENSMUSG00000083169ENSMUST00000117504ENSMUSG00000085866ENSMUST00000131006ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PV_0001ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENSG00000224004ENST00000441945ENSG00000225680ENST00000436530ENSG00000226132ENST00000448352ENSG00000231922ENST00000426913ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0008PV_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000044285ENSMUST00000111388ENSMUSG00000079261ENSMUST00000111826ENSMUSG00000083169ENSMUST00000117504ENSMUSG00000085866ENSMUST00000131006ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125378 ENST00000245451 2.315±0.00 2.019±0.00 N/A N/A 3.203±0.00 8.829±0.00 N/A 2.414±0.00 0.609±0.00 6.745±0.00 N/A 1.672±0.57 6.014±2.69 2.307±0.00
ENST00000417573 N/A 0.731±0.00 N/A N/A 1.189±0.00 N/A N/A 1.067±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.613±0.00 N/A N/A
ENST00000558961 N/A 4.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.218±0.00 N/A N/A
ENST00000558984 0.667±0.00 1.793±0.00 1.590±0.00 0.761±0.00 2.741±0.00 3.251±0.00 0.784±0.00 0.683±0.00 2.444±0.00 1.324±0.00 1.823±0.00 N/A N/A N/A
ENST00000559087 1.105±0.00 N/A N/A 0.179±0.00 N/A 3.732±0.00 0.948±0.00 2.200±0.00 N/A N/A 0.379±0.00 4.338±0.00 N/A 1.714±0.00
ENST00000559501 N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A 0.563±0.00 2.399±0.00 4.065±3.28 9.756±0.00 0.933±0.00
ENST00000559642 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A 4.350±0.00 1.149±0.00 N/A N/A N/A N/A
ENST00000609748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224004 ENST00000441945 N/A 0.029±0.00 N/A 0.015±0.00 0.029±0.00 0.027±0.00 N/A 0.117±0.00 0.013±0.00 N/A 0.025±0.00 N/A N/A 0.086±0.06
ENSG00000225680 ENST00000436530 N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A 0.381±0.17 N/A 0.029±0.00
ENSG00000226132 ENST00000448352 N/A 0.034±0.00 N/A N/A 0.082±0.00 N/A N/A N/A 0.050±0.00 0.016±0.00 N/A 0.765±0.00 N/A 0.102±0.01
ENSG00000231922 ENST00000426913 N/A N/A N/A 0.067±0.00 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235269 ENST00000418927 N/A N/A 0.383±0.00 N/A N/A 0.082±0.00 N/A N/A 0.090±0.00 N/A N/A 0.212±0.00 0.070±0.00 N/A
ENSG00000237356 ENST00000425648 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A 0.157±0.00 N/A 0.070±0.00 0.096±0.00 N/A
ENST00000435322 N/A N/A N/A 0.063±0.00 N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.321±0.00 0.127±0.00 N/A
ENST00000454942 N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.242±0.00 0.238±0.00
ENST00000456100 N/A N/A N/A 0.270±0.00 0.051±0.00 0.821±0.22 0.145±0.00 0.234±0.00 N/A 0.221±0.13 N/A 0.892±0.18 0.125±0.00 0.840±0.51
ENST00000612453 0.085±0.00 0.088±0.00 N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.231±0.00 N/A 0.143±0.00 N/A 0.143±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021835 ENSMUST00000074077 3.015±2.04 2.309±0.67 13.396±0.51 0.433±0.36 1.023±0.23 19.281±2.23 1.750±0.42 6.720±2.42 0.511±0.21 18.108±4.00 0.489±0.18 2.581±0.96 1.303±0.63 0.193±0.08
ENSMUST00000100676 2.078±0.40 1.760±0.23 9.681±2.82 0.286±0.11 1.269±0.48 9.900±2.73 1.155±0.15 7.908±2.43 0.490±0.33 6.753±0.45 1.061±0.15 2.388±0.83 3.328±3.40 0.268±0.10
ENSMUST00000135408 N/A N/A N/A N/A 1.429±0.00 N/A N/A N/A 0.548±0.07 N/A N/A N/A N/A N/A
ENSMUSG00000044285 ENSMUST00000111388 1.440±0.29 0.907±0.10 151.800±149.70 139.229±192.18 0.975±0.24 1.206±0.30 0.600±0.19 1.306±0.43 50.628±107.93 1.612±0.21 0.472±0.36 1.416±0.72 40.984±87.50 2.898±1.28
ENSMUSG00000079261 ENSMUST00000111826 N/A N/A N/A N/A N/A N/A N/A 12.354±3.72 N/A N/A N/A N/A N/A N/A
ENSMUST00000141358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083169 ENSMUST00000117504 0.040±0.01 N/A 0.100±0.02 0.061±0.00 0.048±0.00 0.067±0.03 0.022±0.00 N/A 0.105±0.09 0.043±0.01 0.030±0.01 0.052±0.02 0.042±0.01 0.060±0.00
ENSMUSG00000085866 ENSMUST00000131006 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A 0.137±0.00
ENSMUSG00000086168 ENSMUST00000144439 N/A N/A 0.080±0.02 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 0.198±0.00 0.148±0.00
ENSMUSG00000086746 ENSMUST00000127359 0.818±0.39 0.411±0.21 2.730±0.00 0.271±0.00 N/A 0.276±0.00 N/A 1.845±0.49 0.232±0.09 1.301±0.26 0.337±0.11 0.651±0.27 1.302±0.75 0.383±0.21

Loading