C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008Q9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm64 VISTA 9606 10:110384599-110985964
GeneTranscriptPositionBiotype
ENSG00000108055 (SMC3)
structural maintenance of chromosomes 3 		ENST00000361804 (SMC3-001) 110567691-110604636 protein_coding
ENST00000462899 (SMC3-002) 110568327-110582006 processed_transcript
ENSG00000108061 (SHOC2)
soc-2 suppressor of clear homolog (C. elegans) 		ENST00000265277 (SHOC2-201) 110964125-111013664 protein_coding
ENST00000369452 (SHOC2-001) 110919547-111013667 protein_coding
ENST00000451838 (SHOC2-002) 110964851-111013666 protein_coding
ENST00000480155 (SHOC2-005) 110919593-110964524 processed_transcript
ENST00000489390 (SHOC2-003) 110919603-111011670 processed_transcript
ENST00000489783 (SHOC2-004) 110920003-110964729 processed_transcript
ENST00000497305 (SHOC2-006) 110965032-110985922 processed_transcript
ENSG00000138166 (DUSP5)
dual specificity phosphatase 5 		ENST00000369583 (DUSP5-001) 110497838-110511544 protein_coding
ENST00000468749 (DUSP5-003) 110502747-110510437 processed_transcript
ENSG00000150593 (PDCD4)
programmed cell death 4 (neoplastic transformation inhibitor) 		ENST00000280154 (PDCD4-001) 110871807-110900006 protein_coding
ENST00000393104 (PDCD4-201) 110871795-110900005 protein_coding
ENST00000444997 (PDCD4-004) 110871955-110887844 protein_coding
ENST00000462577 (PDCD4-006) 110885253-110898122 processed_transcript
ENST00000467574 (PDCD4-002) 110871893-110887761 processed_transcript
ENST00000481353 (PDCD4-007) 110884771-110894179 processed_transcript
ENST00000483595 (PDCD4-009) 110887773-110896043 processed_transcript
ENST00000483670 (PDCD4-003) 110871919-110885339 processed_transcript
ENST00000489049 (PDCD4-008) 110887753-110890870 processed_transcript
ENST00000492932 (PDCD4-005) 110880319-110887798 processed_transcript
ENST00000498367 (PDCD4-010) 110890638-110898718 processed_transcript
ENSG00000203497 (PDCD4-AS1)
PDCD4 antisense RNA 1 		ENST00000420367 (PDCD4-AS1-001) 110869868-110872233 antisense
ENSG00000203867 (RBM20)
RNA binding motif protein 20 		ENST00000369519 (RBM20-001) 110644397-110839469 protein_coding
ENST00000465774 (RBM20-008) 110835178-110836258 retained_intron
ENST00000471172 (RBM20-006) 110823588-110831513 processed_transcript
ENST00000480343 (RBM20-007) 110827771-110836234 processed_transcript
ENSG00000223302 (Y_RNA)
Y RNA 		ENST00000411370 (Y_RNA.1-833) 110642678-110642785 misc_RNA
ENSG00000232470 (RP11-313D6.3)
 ENST00000416249 (RP11-313D6.3-001) 110869743-110871594 lincRNA
ENSG00000234118 (RPL13AP6)
ribosomal protein L13a pseudogene 6 		ENST00000430133 (RPL13AP6-001) 110936622-110937233 processed_pseudogene
ENSG00000237642 (HMGB3P5)
high mobility group box 3 pseudogene 5 		ENST00000428894 (HMGB3P5-001) 110450629-110451240 processed_pseudogene
ENSG00000252036 (RN7SKP288)
RNA, 7SK small nuclear pseudogene 288 		ENST00000516227 (RN7SKP288-201) 110756456-110756723 misc_RNA
ENSG00000270589 (RP11-348N5.7)
 ENST00000603915 (RP11-348N5.7-001) 110910596-110912244 antisense
ENSG00000273143 (RP11-525A16.4)
 ENST00000607952 (RP11-525A16.4-002) 110475104-110496204 lincRNA
ENST00000609514 (RP11-525A16.4-001) 110428840-110496187 lincRNA
CIL_0008Q9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm64 VISTA 10090 19:53415569-54017446
GeneTranscriptPositionBiotype
ENSMUSG00000024974 (Smc3)
structural maintenance of chromosomes 3 		ENSMUST00000025930 (Smc3-001) 53600398-53645833 protein_coding
ENSMUST00000157053 (Smc3-002) 53635467-53636495 retained_intron
ENSMUST00000171083 (Smc3-003) 53643358-53644808 retained_intron
ENSMUSG00000024975 (Pdcd4)
programmed cell death 4 		ENSMUST00000025931 (Pdcd4-201) 53903351-53929861 protein_coding
ENSMUST00000074371 (Pdcd4-202) 53892231-53929861 protein_coding
ENSMUST00000165617 (Pdcd4-203) 53903351-53929861 protein_coding
ENSMUSG00000024976 (Shoc2)
soc-2 (suppressor of clear) homolog (C. elegans) 		ENSMUST00000025932 (Shoc2-201) 53944876-54033268 protein_coding
ENSMUST00000169861 (Shoc2-202) 53944306-54033268 protein_coding
ENSMUSG00000034765 (Dusp5)
dual specificity phosphatase 5 		ENSMUST00000038287 (Dusp5-001) 53529109-53542431 protein_coding
ENSMUSG00000043639 (Rbm20)
RNA binding motif protein 20 		ENSMUST00000095969 (Rbm20-001) 53677306-53843763 protein_coding
ENSMUST00000161856 (Rbm20-002) 53843210-53867080 nonsense_mediated_decay
ENSMUST00000162910 (Rbm20-003) 53793308-53813573 processed_transcript
ENSMUST00000164202 (Rbm20-201) 53677306-53867080 protein_coding
ENSMUSG00000071497 (Nutf2-ps1)
nuclear transport factor 2, pseudogene 1 		ENSMUST00000095978 (Nutf2-ps1-201) 53588204-53589067 protein_coding
ENSMUSG00000084957 (Bbip1)
BBSome interacting protein 1 		ENSMUST00000135402 (Bbip1-201) 53929677-53944627 protein_coding
ENSMUSG00000089679 (Gm16299)
predicted gene 16299 		ENSMUST00000162724 (Gm16299-001) 53819354-53825128 antisense
ENSMUSG00000089807 (Gm16298)
predicted gene 16298 		ENSMUST00000161107 (Gm16298-001) 53767891-53768310 processed_pseudogene
ENSMUSG00000097636 (5830416P10Rik)
RIKEN cDNA 5830416P10 gene 		ENSMUST00000180489 (5830416P10Rik-201) 53441212-53464796 lincRNA
ENSMUST00000180667 (5830416P10Rik-202) 53444014-53447314 lincRNA
ENSMUST00000181539 (5830416P10Rik-203) 53451641-53454094 lincRNA
ENSMUSG00000097779 (4833407H14Rik)
RIKEN cDNA 4833407H14 gene 		ENSMUST00000180442 (4833407H14Rik-201) 53460631-53462723 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Q9_0001ENSG00000108055ENST00000361804ENST00000462899ENSG00000108061ENST00000265277ENST00000369452ENST00000451838ENST00000480155ENST00000489390ENST00000489783ENST00000497305ENSG00000138166ENST00000369583ENST00000468749ENSG00000150593ENST00000280154ENST00000393104ENST00000444997ENST00000462577ENST00000467574ENST00000481353ENST00000483595ENST00000483670ENST00000489049ENST00000492932ENST00000498367ENSG00000203497ENST00000420367ENSG00000203867ENST00000369519ENST00000465774ENST00000471172ENST00000480343ENSG00000223302ENST00000411370ENSG00000232470ENST00000416249ENSG00000234118ENST00000430133ENSG00000237642ENST00000428894ENSG00000252036ENST00000516227ENSG00000270589ENST00000603915ENSG00000273143ENST00000607952ENST00000609514CIL_0008Q9_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108055 ENST00000361804 11.222±0.00 11.604±0.00 1.352±0.00 4.248±1.81 4.045±1.76 6.365±4.68 5.257±0.00 5.211±3.09 3.415±0.75 3.859±1.59 3.108±2.84 21.683±18.18 7.219±3.59 55.317±16.85
ENST00000462899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108061 ENST00000265277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.654±0.00 4.174±0.00
ENST00000369452 13.550±0.00 5.989±0.00 3.742±0.00 11.601±0.92 11.425±0.41 10.084±0.21 5.410±1.12 5.356±1.65 6.004±3.14 8.595±3.34 4.471±3.21 7.921±2.88 3.692±0.63 12.462±3.14
ENST00000451838 N/A 3.765±0.00 N/A N/A 2.165±0.00 N/A N/A N/A 1.089±0.00 N/A N/A 7.585±0.00 1.763±0.38 8.294±3.07
ENST00000480155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489783 N/A N/A 2.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138166 ENST00000369583 20.574±0.00 10.995±0.00 N/A 2.210±0.82 5.234±2.08 2.591±1.41 2.176±1.08 3.271±0.70 2.490±2.07 32.320±0.00 0.889±0.33 17.221±14.89 38.368±8.30 15.331±12.96
ENST00000468749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000150593 ENST00000280154 N/A N/A N/A 2.065±0.00 N/A 5.957±0.00 N/A 1.262±0.00 N/A 2.482±0.00 N/A 5.897±1.30 N/A N/A
ENST00000393104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444997 39.310±0.00 N/A N/A N/A 33.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462577 26.202±0.00 N/A N/A N/A 29.626±0.00 N/A N/A N/A N/A N/A N/A 62.536±16.75 48.563±30.21 48.659±10.04
ENST00000467574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481353 N/A N/A N/A N/A N/A N/A N/A N/A 19.416±0.00 N/A N/A 20.941±0.00 N/A N/A
ENST00000483595 44.519±0.00 N/A N/A N/A 45.942±0.00 41.909±0.00 19.735±0.00 N/A N/A N/A N/A 123.130±0.00 130.623±0.00 57.207±0.00
ENST00000483670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492932 N/A N/A N/A N/A N/A 28.522±0.00 3.940±0.00 N/A 31.020±0.00 20.464±0.00 N/A 24.111±0.00 N/A N/A
ENST00000498367 33.112±0.00 77.171±0.00 N/A 16.363±7.73 37.149±0.00 30.368±3.24 N/A 8.147±0.00 21.099±0.00 17.968±1.31 6.578±0.00 59.966±45.71 72.182±59.11 55.726±0.00
ENSG00000203497 ENST00000420367 1.145±0.00 N/A N/A 0.581±0.30 0.700±0.29 0.320±0.00 0.470±0.00 0.504±0.00 0.575±0.00 1.643±0.00 0.318±0.00 1.844±1.06 2.481±0.05 1.691±0.01
ENSG00000203867 ENST00000369519 0.335±0.00 0.148±0.00 0.093±0.00 0.108±0.00 0.197±0.02 0.671±0.00 16.337±8.76 0.058±0.02 0.063±0.05 0.179±0.02 3.673±2.00 0.115±0.05 0.138±0.05 0.664±0.00
ENST00000465774 N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A N/A N/A
ENST00000471172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223302 ENST00000411370 N/A N/A N/A 0.582±0.00 N/A N/A 0.740±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232470 ENST00000416249 0.108±0.00 N/A N/A 0.039±0.00 0.225±0.00 N/A 0.035±0.00 0.417±0.00 0.396±0.00 0.249±0.00 N/A 0.273±0.14 N/A 0.507±0.24
ENSG00000234118 ENST00000430133 0.390±0.00 1.669±0.00 2.033±0.00 0.172±0.00 0.292±0.00 N/A 0.244±0.10 N/A 0.260±0.14 0.636±0.35 N/A 0.725±0.61 0.122±0.00 0.423±0.10
ENSG00000237642 ENST00000428894 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.018±0.00 0.188±0.00 N/A N/A
ENSG00000252036 ENST00000516227 N/A N/A 2.639±0.00 N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A 0.288±0.00
ENSG00000270589 ENST00000603915 0.172±0.00 N/A N/A 0.073±0.00 0.390±0.10 0.299±0.14 0.171±0.07 0.239±0.06 0.287±0.16 0.352±0.02 0.070±0.03 0.406±0.12 0.093±0.03 0.286±0.01
ENSG00000273143 ENST00000607952 N/A 0.542±0.00 N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.296±0.02 0.146±0.00 0.481±0.43
ENST00000609514 N/A 0.036±0.00 N/A N/A 0.037±0.00 N/A N/A N/A 0.419±0.00 N/A N/A 0.189±0.00 0.107±0.03 0.042±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024974 ENSMUST00000025930 3.449±1.30 6.567±0.62 5.655±0.65 18.442±7.04 2.846±0.91 4.022±1.20 1.848±0.51 3.266±0.49 10.146±9.10 5.276±0.45 2.689±0.53 10.986±14.79 43.332±38.60 21.459±29.36
ENSMUST00000157053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024975 ENSMUST00000025931 10.948±1.75 3.684±0.26 37.149±2.92 10.313±0.37 9.547±2.39 6.642±1.57 3.878±0.29 7.016±1.61 10.660±4.45 6.507±0.62 3.457±0.24 9.102±4.34 15.990±4.44 7.762±1.30
ENSMUST00000074371 N/A 3.047±0.00 N/A N/A N/A N/A N/A N/A 3.725±0.16 N/A N/A N/A N/A N/A
ENSMUST00000165617 12.274±2.64 4.201±0.00 17.518±0.00 74.333±0.00 N/A 7.917±0.41 N/A N/A N/A N/A N/A 20.383±32.60 25.779±17.83 56.459±72.91
ENSMUSG00000024976 ENSMUST00000025932 7.862±3.03 4.088±0.63 12.946±0.00 13.805±0.16 8.785±2.33 10.587±1.77 5.141±2.32 5.770±2.12 4.115±1.26 7.093±3.01 3.863±1.73 9.965±2.08 7.879±2.99 3.869±0.35
ENSMUST00000169861 N/A 2.639±0.39 N/A 3.698±0.00 8.199±5.59 3.891±1.15 N/A 5.307±0.69 4.251±1.47 N/A N/A 5.895±2.63 10.744±2.40 4.164±0.67
ENSMUSG00000034765 ENSMUST00000038287 1.388±0.39 2.253±1.02 3.342±0.69 0.846±0.04 3.035±1.23 6.342±0.55 2.944±0.38 0.617±0.20 0.804±0.46 5.567±0.67 0.234±0.22 8.492±3.27 15.488±8.74 3.062±1.47
ENSMUSG00000043639 ENSMUST00000095969 N/A 0.092±0.00 N/A N/A N/A N/A N/A 0.401±0.09 N/A 0.470±0.15 N/A 0.243±0.03 N/A 0.094±0.00
ENSMUST00000161856 0.163±0.00 0.372±0.13 N/A 0.597±0.00 N/A 1.369±0.00 N/A 0.300±0.00 0.287±0.08 N/A N/A 1.114±0.14 1.388±0.94 0.161±0.01
ENSMUST00000162910 N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164202 0.293±0.22 0.063±0.00 0.381±0.03 0.222±0.03 0.432±0.00 0.140±0.02 25.545±1.44 0.249±0.02 0.061±0.02 0.416±0.21 8.246±3.22 0.231±0.06 0.519±0.34 0.101±0.03
ENSMUSG00000071497 ENSMUST00000095978 3.234±0.42 0.305±0.21 0.344±0.25 11.327±10.23 1.329±0.40 0.710±0.30 1.599±0.30 0.781±0.39 6.550±13.06 0.971±0.20 0.314±0.12 3.795±2.42 0.236±0.11 0.592±0.25
ENSMUSG00000084957 ENSMUST00000135402 N/A N/A N/A 12.862±0.25 N/A N/A 3.534±0.55 3.055±0.37 4.561±0.67 3.128±0.00 8.492±1.24 7.844±0.72 6.417±0.00 12.485±0.53
ENSMUSG00000089679 ENSMUST00000162724 0.263±0.07 0.390±0.11 0.192±0.04 0.117±0.10 0.411±0.17 0.124±0.04 0.721±0.05 0.109±0.05 0.137±0.16 0.085±0.06 0.382±0.19 0.251±0.11 0.076±0.04 0.147±0.10
ENSMUSG00000089807 ENSMUST00000161107 N/A N/A 0.060±0.03 0.028±0.00 N/A 0.214±0.00 0.488±0.23 0.121±0.00 N/A N/A 0.162±0.01 N/A 0.159±0.09 N/A
ENSMUSG00000097636 ENSMUST00000180489 0.053±0.03 N/A N/A N/A 0.129±0.05 0.153±0.04 0.042±0.04 0.039±0.02 0.084±0.11 0.195±0.00 0.027±0.02 0.063±0.02 2.862±2.68 0.026±0.01
ENSMUST00000180667 0.210±0.08 N/A 0.575±0.00 0.352±0.00 0.816±0.33 0.869±0.08 0.060±0.01 0.203±0.06 0.134±0.15 0.818±0.31 0.027±0.01 0.202±0.10 7.315±6.44 0.124±0.07
ENSMUST00000181539 N/A N/A N/A N/A N/A N/A 0.051±0.04 0.071±0.01 0.043±0.02 N/A 0.017±0.00 0.170±0.00 N/A 0.017±0.00
ENSMUSG00000097779 ENSMUST00000180442 0.203±0.12 N/A 0.299±0.06 0.011±0.00 0.542±0.26 3.179±0.54 0.068±0.05 0.075±0.03 0.123±0.12 0.776±0.19 0.163±0.00 0.172±0.07 0.405±0.33 0.029±0.00

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