C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008QD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm60 VISTA 9606 3:69770896-70373326
GeneTranscriptPositionBiotype
ENSG00000187098 (MITF)
microphthalmia-associated transcription factor 		ENST00000314557 (MITF-005) 69936587-69965668 protein_coding
ENST00000314589 (MITF-015) 69866212-69965647 protein_coding
ENST00000328528 (MITF-201) 69763811-69968337 protein_coding
ENST00000352241 (MITF-001) 69739435-69968336 protein_coding
ENST00000394348 (MITF-006) 69936629-69939065 protein_coding
ENST00000394351 (MITF-004) 69936603-69965824 protein_coding
ENST00000429090 (MITF-012) 69758704-69937835 protein_coding
ENST00000433517 (MITF-009) 69762724-69949083 protein_coding
ENST00000448226 (MITF-007) 69739471-69966029 protein_coding
ENST00000451708 (MITF-003) 69866259-69959373 protein_coding
ENST00000457080 (MITF-002) 69763811-69879383 protein_coding
ENST00000461014 (MITF-013) 69936829-69941331 processed_transcript
ENST00000461511 (MITF-011) 69739474-69752385 processed_transcript
ENST00000472437 (MITF-014) 69763556-69965647 protein_coding
ENST00000478490 (MITF-008) 69936628-69965570 nonsense_mediated_decay
ENST00000495741 (MITF-010) 69739482-69879347 processed_transcript
ENST00000531774 (MITF-016) 69936723-69965248 protein_coding
ENSG00000240405 (LINC01212)
long intergenic non-protein coding RNA 1212 		ENST00000483525 (LINC01212-001) 69999744-70015318 lincRNA
ENST00000488861 (LINC01212-002) 69999577-70013867 lincRNA
ENSG00000242120 (RP11-231I13.2)
 ENST00000567252 (RP11-231I13.2-001) 70196894-70312726 antisense
ENSG00000242728 (UQCRHP4)
ubiquinol-cytochrome c reductase hinge protein pseudogene 4 		ENST00000471686 (UQCRHP4-001) 70140217-70140488 processed_pseudogene
ENSG00000271034 (RP11-963H1.1)
 ENST00000605810 (RP11-963H1.1-001) 70125070-70126609 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Structures from Ensembl
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CIL_0008QD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm60 VISTA 10090 6:97812394-98414832
GeneTranscriptPositionBiotype
ENSMUSG00000035158 (Mitf)
microphthalmia-associated transcription factor 		ENSMUST00000043628 (Mitf-006) 97991792-98018707 protein_coding
ENSMUST00000043637 (Mitf-001) 97807058-98021349 protein_coding
ENSMUST00000101123 (Mitf-003) 97929799-98018707 protein_coding
ENSMUST00000113339 (Mitf-005) 97940918-98018707 protein_coding
ENSMUST00000139462 (Mitf-007) 97991819-98018497 nonsense_mediated_decay
ENSMUST00000144641 (Mitf-004) 97938494-97941128 processed_transcript
ENSMUST00000148233 (Mitf-002) 97807058-97942179 retained_intron
ENSMUSG00000083086 (Gm15531)
predicted gene 15531 		ENSMUST00000118062 (Gm15531-001) 97890288-97890539 processed_pseudogene
ENSMUSG00000090667 (Gm765)
predicted gene 765 		ENSMUST00000164491 (Gm765-201) 98238014-98342754 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QD_0001ENSG00000187098ENST00000314557ENST00000314589ENST00000328528ENST00000352241ENST00000394348ENST00000394351ENST00000429090ENST00000433517ENST00000448226ENST00000451708ENST00000457080ENST00000461014ENST00000461511ENST00000472437ENST00000478490ENST00000495741ENST00000531774ENSG00000240405ENST00000483525ENST00000488861ENSG00000242120ENST00000567252ENSG00000242728ENST00000471686ENSG00000271034ENST00000605810CIL_0008QD_0002ENSMUSG00000035158ENSMUST00000043628ENSMUST00000043637ENSMUST00000101123ENSMUST00000113339ENSMUST00000139462ENSMUST00000144641ENSMUST00000148233ENSMUSG00000083086ENSMUST00000118062ENSMUSG00000090667ENSMUST00000164491
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QD_0001ENSG00000187098ENST00000314557ENST00000314589ENST00000352241ENST00000448226ENST00000472437ENST00000531774ENSG00000240405ENST00000483525ENST00000488861ENSG00000242120ENST00000567252ENSG00000242728ENST00000471686ENSG00000271034ENST00000605810CIL_0008QD_0002ENSMUSG00000035158ENSMUST00000043628ENSMUST00000043637ENSMUST00000101123ENSMUST00000113339ENSMUST00000139462ENSMUST00000148233ENSMUSG00000083086ENSMUST00000118062ENSMUSG00000090667ENSMUST00000164491
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000187098 ENST00000314557 N/A N/A N/A N/A N/A 0.482±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000314589 N/A N/A 4.604±0.00 N/A N/A N/A 3.954±0.00 N/A N/A 1.062±0.00 N/A N/A N/A N/A
ENST00000328528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000352241 9.466±0.00 2.888±0.00 N/A 1.214±0.00 3.779±0.00 3.391±3.20 14.434±0.00 5.733±0.00 0.893±0.50 3.521±0.00 17.323±16.15 3.596±0.79 1.008±0.28 2.330±2.02
ENST00000394348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.366±0.00 N/A N/A N/A
ENST00000451708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472437 N/A N/A N/A N/A 2.013±0.00 N/A N/A N/A N/A N/A 2.362±0.00 N/A N/A N/A
ENST00000478490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531774 N/A N/A 2.903±0.00 1.650±0.00 3.034±0.00 0.853±0.00 4.504±0.00 N/A 3.623±0.00 1.784±0.00 3.560±0.00 1.227±0.61 3.759±0.00 1.830±0.00
ENSG00000240405 ENST00000483525 0.050±0.00 0.180±0.00 N/A 0.122±0.00 0.057±0.00 0.006±0.00 0.012±0.00 0.045±0.00 0.020±0.00 0.074±0.00 N/A 0.028±0.02 0.013±0.00 0.135±0.04
ENST00000488861 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A 0.299±0.19 N/A 0.467±0.28
ENSG00000242120 ENST00000567252 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 0.060±0.00 N/A N/A N/A N/A N/A
ENSG00000242728 ENST00000471686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A N/A
ENSG00000271034 ENST00000605810 N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A 0.011±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035158 ENSMUST00000043628 N/A N/A N/A 2.341±0.00 N/A N/A N/A N/A N/A N/A N/A 4.991±0.00 22.603±0.74 0.203±0.00
ENSMUST00000043637 3.379±1.10 0.931±0.12 1.218±0.33 0.107±0.02 1.494±0.37 0.595±0.06 3.056±1.24 1.709±0.14 0.228±0.10 1.375±0.34 1.132±0.65 1.384±0.60 10.051±5.38 0.157±0.01
ENSMUST00000101123 3.857±1.93 1.075±0.40 N/A 0.480±0.00 2.973±0.99 1.037±0.47 6.614±0.91 2.387±0.58 0.411±0.17 1.680±0.73 N/A 4.634±0.79 N/A 0.232±0.09
ENSMUST00000113339 N/A 0.853±0.15 N/A N/A 2.019±0.84 0.459±0.00 N/A 0.885±0.13 N/A 0.993±0.36 N/A 5.849±0.00 N/A N/A
ENSMUST00000139462 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.03 N/A N/A N/A N/A N/A
ENSMUST00000144641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148233 N/A 1.252±0.00 N/A N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000083086 ENSMUST00000118062 N/A N/A 0.099±0.00 N/A 1.429±1.01 0.954±0.00 N/A 0.440±0.04 0.259±0.00 1.058±0.33 N/A N/A 0.131±0.00 N/A
ENSMUSG00000090667 ENSMUST00000164491 0.253±0.16 0.097±0.00 0.168±0.03 0.981±0.96 0.096±0.04 0.184±0.00 N/A N/A 0.060±0.04 0.106±0.07 N/A 0.107±0.08 0.059±0.00 0.087±0.03

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