C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008QG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm922 VISTA 9606 9:93400439-94002641
GeneTranscriptPositionBiotype
ENSG00000048828 (FAM120A)
family with sequence similarity 120A 		ENST00000277165 (FAM120A-004) 93451722-93566107 protein_coding
ENST00000375389 (FAM120A-005) 93451891-93531406 protein_coding
ENST00000427765 (FAM120A-003) 93532155-93564765 protein_coding
ENST00000446420 (FAM120A-002) 93452384-93532589 protein_coding
ENST00000475933 (FAM120A-001) 93529470-93532584 processed_transcript
ENSG00000131668 (BARX1)
BARX homeobox 1 		ENST00000253968 (BARX1-001) 93951622-93955372 protein_coding
ENST00000401724 (BARX1-002) 93951627-93953431 protein_coding
ENSG00000197724 (PHF2)
PHD finger protein 2 		ENST00000359246 (PHF2-001) 93576407-93679587 protein_coding
ENST00000375376 (PHF2-201) 93576627-93679587 protein_coding
ENST00000610682 (PHF2-202) 93576747-93679583 protein_coding
ENSG00000227603 (RP11-165J3.6)
 ENST00000445280 (RP11-165J3.6-001) 93435332-93437121 antisense
ENSG00000231990 (RP11-53B5.1)
 ENST00000443771 (RP11-53B5.1-001) 93857083-93858333 lincRNA
ENSG00000235601 (BARX1-AS1)
BARX1 antisense RNA 1 (head to head) 		ENST00000453045 (BARX1-AS1-001) 93955834-93957922 lincRNA
ENST00000454594 (BARX1-AS1-002) 93955597-93959140 lincRNA
ENSG00000237385 (RP11-165J3.5)
 ENST00000443716 (RP11-165J3.5-001) 93430342-93431299 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008QG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm922 VISTA 10090 13:48479624-49081302
GeneTranscriptPositionBiotype
ENSMUSG00000021381 (Barx1)
BarH-like homeobox 1 		ENSMUST00000021813 (Barx1-001) 48662998-48666507 protein_coding
ENSMUSG00000037989 (Wnk2)
WNK lysine deficient protein kinase 2 		ENSMUST00000035538 (Wnk2-201) 49036303-49148014 protein_coding
ENSMUST00000049265 (Wnk2-202) 49036303-49148014 protein_coding
ENSMUST00000091623 (Wnk2-203) 49038874-49148014 protein_coding
ENSMUST00000110096 (Wnk2-204) 49037981-49148014 protein_coding
ENSMUST00000110097 (Wnk2-205) 49036303-49148014 protein_coding
ENSMUST00000159196 (Wnk2-004) 49037609-49060883 protein_coding
ENSMUST00000159559 (Wnk2-005) 49036310-49147232 protein_coding
ENSMUST00000159633 (Wnk2-006) 49061329-49071015 nonsense_mediated_decay
ENSMUST00000160087 (Wnk2-003) 49037620-49078063 protein_coding
ENSMUST00000162403 (Wnk2-002) 49036309-49147232 protein_coding
ENSMUST00000162581 (Wnk2-001) 49036303-49148012 protein_coding
ENSMUSG00000038014 (Fam120a)
family with sequence similarity 120, member A 		ENSMUST00000060805 (Fam120a-201) 48879219-48968017 protein_coding
ENSMUSG00000038025 (Phf2)
PHD finger protein 2 		ENSMUST00000035540 (Phf2-201) 48801750-48870885 protein_coding
ENSMUSG00000038042 (Ptpdc1)
protein tyrosine phosphatase domain containing 1 		ENSMUST00000035824 (Ptpdc1-201) 48577873-48625573 protein_coding
ENSMUSG00000050954 (Zfp169)
zinc finger protein 169 		ENSMUST00000110110 (Zfp169-201) 48489454-48506939 protein_coding
ENSMUST00000167682 (Zfp169-202) 48489202-48506939 protein_coding
ENSMUST00000176176 (Zfp169-001) 48487647-48513436 protein_coding
ENSMUST00000176949 (Zfp169-004) 48491330-48513426 protein_coding
ENSMUST00000176996 (Zfp169-005) 48491252-48513410 protein_coding
ENSMUST00000177474 (Zfp169-003) 48494523-48513451 retained_intron
ENSMUST00000177530 (Zfp169-002) 48487659-48513394 protein_coding
ENSMUSG00000053181 (A830005F24Rik)
RIKEN cDNA A830005F24 gene 		ENSMUST00000065465 (A830005F24Rik-001) 48513570-48514859 protein_coding
ENSMUSG00000086889 (Phf2os1)
PHD finger protein 2, opposite strand 1 		ENSMUST00000123212 (Phf2os1-001) 48871112-48875460 antisense
ENSMUSG00000093232 (Gm24111)
predicted gene, 24111 		ENSMUST00000175491 (Gm24111-201) 48537825-48537921 miRNA
ENSMUSG00000097059 (Fam120aos)
family with sequence similarity 120A, opposite strand 		ENSMUST00000180775 (Fam120aos-201) 48968287-48972031 lincRNA
ENSMUSG00000097375 (6720427I07Rik)
RIKEN cDNA 6720427I07 gene 		ENSMUST00000181490 (6720427I07Rik-001) 48535523-48537822 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QG_0001ENSG00000048828ENST00000277165ENST00000375389ENST00000427765ENST00000446420ENST00000475933ENSG00000131668ENST00000253968ENST00000401724ENSG00000197724ENST00000359246ENST00000375376ENST00000610682ENSG00000227603ENST00000445280ENSG00000231990ENST00000443771ENSG00000235601ENST00000453045ENST00000454594ENSG00000237385ENST00000443716CIL_0008QG_0002ENSMUSG00000021381ENSMUST00000021813ENSMUSG00000037989ENSMUST00000035538ENSMUST00000049265ENSMUST00000091623ENSMUST00000110096ENSMUST00000110097ENSMUST00000159196ENSMUST00000159559ENSMUST00000159633ENSMUST00000160087ENSMUST00000162403ENSMUST00000162581ENSMUSG00000038014ENSMUST00000060805ENSMUSG00000038025ENSMUST00000035540ENSMUSG00000038042ENSMUST00000035824ENSMUSG00000050954ENSMUST00000110110ENSMUST00000167682ENSMUST00000176176ENSMUST00000176949ENSMUST00000176996ENSMUST00000177474ENSMUST00000177530ENSMUSG00000053181ENSMUST00000065465ENSMUSG00000086889ENSMUST00000123212ENSMUSG00000093232ENSMUST00000175491ENSMUSG00000097059ENSMUST00000180775ENSMUSG00000097375ENSMUST00000181490
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QG_0001ENSG00000048828ENST00000277165ENST00000375389ENST00000427765ENSG00000131668ENST00000253968ENST00000401724ENSG00000197724ENST00000359246ENST00000610682ENSG00000227603ENST00000445280ENSG00000231990ENST00000443771ENSG00000235601ENST00000453045ENST00000454594ENSG00000237385ENST00000443716CIL_0008QG_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048828 ENST00000277165 18.958±0.00 12.731±0.00 3.735±0.00 6.005±4.33 17.372±3.89 22.352±8.02 15.366±11.01 22.520±10.44 12.145±5.19 15.013±3.79 17.183±14.92 19.537±4.46 23.781±5.55 13.164±6.42
ENST00000375389 N/A N/A 2.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.062±0.00 6.940±0.00
ENST00000446420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000131668 ENST00000253968 N/A 0.127±0.00 N/A N/A 0.037±0.00 1.560±0.00 N/A 0.113±0.00 0.032±0.00 N/A N/A 1.719±1.53 0.048±0.00 3.783±1.01
ENST00000401724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 0.081±0.00 1.072±0.00
ENSG00000197724 ENST00000359246 11.270±0.00 7.159±0.00 1.018±0.00 3.937±2.95 3.657±2.10 4.772±2.79 6.899±0.00 2.624±1.58 2.644±1.05 6.552±3.14 4.851±3.15 11.886±4.35 7.876±0.86 4.791±0.95
ENST00000375376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610682 N/A 4.680±0.00 N/A N/A N/A 6.418±0.00 1.248±0.00 1.472±1.02 1.395±0.00 N/A 1.378±0.66 5.174±0.00 2.164±0.12 2.483±0.00
ENSG00000227603 ENST00000445280 0.040±0.00 0.629±0.00 0.255±0.00 0.792±0.00 0.168±0.00 0.446±0.00 0.246±0.11 0.318±0.00 0.112±0.00 0.264±0.17 0.507±0.30 0.259±0.06 0.300±0.19 0.262±0.00
ENSG00000231990 ENST00000443771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.543±0.07
ENSG00000235601 ENST00000453045 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A 0.045±0.03
ENST00000454594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00
ENSG00000237385 ENST00000443716 N/A 0.016±0.00 N/A 0.017±0.00 N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.053±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021381 ENSMUST00000021813 N/A N/A 0.008±0.00 0.111±0.06 N/A 0.029±0.01 0.069±0.01 N/A 0.507±0.28 0.075±0.03 N/A 0.073±0.03 1.653±1.05 0.104±0.06
ENSMUSG00000037989 ENSMUST00000035538 N/A 0.236±0.09 N/A N/A N/A 0.865±0.00 N/A 0.092±0.01 0.011±0.00 N/A N/A 0.619±0.00 N/A 0.045±0.01
ENSMUST00000049265 N/A 0.427±0.21 1.107±0.00 N/A 0.499±0.11 1.573±0.44 N/A 0.117±0.05 0.031±0.00 0.255±0.13 N/A 1.263±0.59 1.159±0.45 N/A
ENSMUST00000091623 N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A 0.021±0.02 N/A N/A N/A N/A N/A
ENSMUST00000110096 N/A N/A N/A N/A 0.217±0.00 1.297±0.30 N/A 0.153±0.00 0.017±0.00 N/A N/A 0.990±0.24 N/A 0.035±0.00
ENSMUST00000110097 N/A N/A 4.362±0.00 10.189±0.00 0.729±0.00 0.912±0.00 3.542±1.36 0.126±0.00 N/A 0.474±0.11 17.557±2.79 N/A N/A 0.083±0.04
ENSMUST00000159196 0.823±0.68 0.515±0.05 3.936±0.65 10.612±2.67 0.702±0.33 2.106±0.51 3.256±0.98 N/A 0.044±0.03 0.175±0.00 7.822±1.94 1.465±0.38 0.942±0.36 0.035±0.00
ENSMUST00000159559 N/A N/A N/A 16.108±0.00 0.505±0.00 N/A 1.050±0.00 N/A 0.033±0.00 N/A 4.428±1.25 N/A N/A 0.145±0.00
ENSMUST00000159633 N/A N/A N/A N/A 1.074±0.00 N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A 0.401±0.00
ENSMUST00000160087 0.346±0.34 0.257±0.03 1.905±0.00 N/A N/A 1.101±0.00 N/A 0.243±0.06 0.041±0.02 0.289±0.00 N/A N/A N/A N/A
ENSMUST00000162403 0.820±0.73 0.254±0.07 N/A 23.555±0.00 0.331±0.10 1.128±0.13 N/A 0.138±0.06 0.028±0.02 0.132±0.00 N/A 1.358±0.77 2.467±2.56 0.118±0.07
ENSMUST00000162581 N/A 0.284±0.08 N/A N/A N/A 0.593±0.00 N/A 0.114±0.02 0.014±0.00 N/A N/A 1.309±1.04 0.580±0.30 0.049±0.01
ENSMUSG00000038014 ENSMUST00000060805 32.946±8.66 47.672±3.26 37.701±2.56 19.267±5.52 26.700±7.29 69.293±5.89 19.366±1.55 32.521±1.66 26.842±5.34 26.860±6.07 21.698±0.72 54.193±9.89 54.898±25.35 4.038±1.13
ENSMUSG00000038025 ENSMUST00000035540 7.667±0.63 9.358±1.48 12.167±3.85 8.862±0.33 6.195±3.05 6.987±1.62 4.381±0.91 6.246±0.57 3.408±0.93 11.928±1.00 11.498±0.56 9.106±3.39 8.677±4.71 1.447±0.12
ENSMUSG00000038042 ENSMUST00000035824 1.952±0.82 1.310±0.48 1.752±0.60 2.082±0.32 0.904±0.49 0.777±0.17 0.687±0.22 3.632±0.66 0.168±0.10 1.762±0.37 0.960±0.20 1.429±0.49 1.066±0.59 30.638±17.88
ENSMUSG00000050954 ENSMUST00000110110 N/A N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A 0.950±0.00 0.247±0.11 N/A 0.169±0.02 3.202±0.51
ENSMUST00000167682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176176 N/A 0.735±0.20 N/A N/A 1.382±0.09 1.140±0.17 0.379±0.02 0.579±0.00 0.576±0.04 1.613±0.04 N/A 1.692±0.49 N/A N/A
ENSMUST00000176949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.01 N/A
ENSMUST00000177530 1.133±0.24 0.714±0.15 N/A N/A 1.460±0.18 1.079±0.00 0.156±0.00 N/A 0.239±0.00 1.362±0.06 0.193±0.09 0.919±0.46 0.040±0.00 2.644±0.80
ENSMUSG00000053181 ENSMUST00000065465 0.141±0.00 N/A 0.112±0.03 1.210±0.65 0.137±0.05 N/A 0.108±0.04 N/A 0.180±0.11 N/A 0.083±0.01 0.132±0.04 0.124±0.08 0.469±0.55
ENSMUSG00000086889 ENSMUST00000123212 N/A 0.482±0.00 1.784±0.00 N/A 0.339±0.00 0.239±0.05 N/A 0.754±0.15 0.272±0.22 0.743±0.00 0.931±0.42 1.090±0.00 0.882±0.25 1.298±0.60
ENSMUSG00000093232 ENSMUST00000175491 N/A N/A N/A 27.922±0.00 N/A N/A N/A N/A N/A N/A N/A 83.834±0.00 107.822±0.84 N/A
ENSMUSG00000097059 ENSMUST00000180775 0.914±0.00 29.180±10.81 1.100±0.00 1.726±1.12 1.743±0.88 11.897±0.09 0.570±0.17 N/A 1.015±0.63 3.712±0.03 N/A 17.495±11.97 0.779±0.42 0.041±0.00
ENSMUSG00000097375 ENSMUST00000181490 1.331±0.20 0.545±0.21 6.505±1.96 2.978±2.00 1.352±0.27 0.704±0.28 1.043±0.29 1.008±0.27 2.370±1.40 1.687±0.27 0.895±0.11 1.606±1.13 1.964±0.68 1.264±0.39

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