C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008R7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs666 VISTA 9606 3:137341981-137943122
GeneTranscriptPositionBiotype
ENSG00000168875 (SOX14)
SRY (sex determining region Y)-box 14 		ENST00000306087 (SOX14-001) 137764284-137766338 protein_coding
ENSG00000201325 (RNA5SP142)
RNA, 5S ribosomal pseudogene 142 		ENST00000364455 (RNA5SP142-201) 137518134-137518255 rRNA
ENSG00000239513 (LINC01210)
long intergenic non-protein coding RNA 1210 		ENST00000465283 (LINC01210-003) 137774541-137777596 lincRNA
ENST00000469216 (LINC01210-004) 137774992-137777596 lincRNA
ENST00000471091 (LINC01210-002) 137774544-137777596 lincRNA
ENST00000478772 (LINC01210-001) 137771949-137780878 lincRNA
ENSG00000241478 (HSPA8P9)
heat shock 70kDa protein 8 pseudogene 9 		ENST00000485881 (HSPA8P9-001) 137880295-137882237 processed_pseudogene
ENSG00000242070 (NPM1P17)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17 		ENST00000479221 (NPM1P17-001) 137723774-137724543 processed_pseudogene
ENSG00000243886 (RP11-575C1.1)
 ENST00000474107 (RP11-575C1.1-001) 137535572-137536142 processed_pseudogene
ENSG00000261146 (RP11-2A4.4)
 ENST00000566529 (RP11-2A4.4-001) 137791973-137796678 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008R7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs666 VISTA 10090 9:99694345-100295440
GeneTranscriptPositionBiotype
ENSMUSG00000032473 (Cldn18)
claudin 18 		ENSMUST00000035048 (Cldn18-001) 99689461-99710063 protein_coding
ENSMUST00000112882 (Cldn18-003) 99691820-99717267 protein_coding
ENSMUST00000131922 (Cldn18-004) 99692722-99717267 protein_coding
ENSMUST00000136429 (Cldn18-002) 99692182-99710009 protein_coding
ENSMUSG00000053747 (Sox14)
SRY (sex determining region Y)-box 14 		ENSMUST00000054819 (Sox14-001) 99874106-99876170 protein_coding
ENSMUST00000183065 (Sox14-002) 99874220-99875655 protein_coding
ENSMUSG00000099631 (RP23-14N2.2)
predicted gene 8641 		ENSMUST00000186995 (RP23-14N2.2-001) 99946564-99947389 processed_pseudogene
ENSMUSG00000101584 (RP23-14N2.1)
RIKEN cDNA 4930519F24 gene 		ENSMUST00000185764 (RP23-14N2.1-001) 100022300-100034672 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008R7_0001ENSG00000168875ENST00000306087ENSG00000201325ENST00000364455ENSG00000239513ENST00000465283ENST00000469216ENST00000471091ENST00000478772ENSG00000241478ENST00000485881ENSG00000242070ENST00000479221ENSG00000243886ENST00000474107ENSG00000261146ENST00000566529CIL_0008R7_0002ENSMUSG00000032473ENSMUST00000035048ENSMUST00000112882ENSMUST00000131922ENSMUST00000136429ENSMUSG00000053747ENSMUST00000054819ENSMUST00000183065ENSMUSG00000099631ENSMUST00000186995ENSMUSG00000101584ENSMUST00000185764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008R7_0001ENSG00000168875ENST00000306087ENSG00000201325ENST00000364455ENSG00000239513ENST00000465283ENST00000469216ENST00000471091ENST00000478772ENSG00000241478ENST00000485881ENSG00000242070ENST00000479221ENSG00000243886ENST00000474107ENSG00000261146ENST00000566529CIL_0008R7_0002ENSMUSG00000032473ENSMUST00000035048ENSMUST00000112882ENSMUST00000131922ENSMUST00000136429ENSMUSG00000053747ENSMUST00000054819ENSMUST00000183065ENSMUSG00000099631ENSMUST00000186995ENSMUSG00000101584ENSMUST00000185764
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168875 ENST00000306087 N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A 2.787±0.74 0.048±0.02
ENSG00000201325 ENST00000364455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.820±0.00
ENSG00000239513 ENST00000465283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.547±0.00
ENST00000469216 N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A N/A N/A 0.046±0.00 23.426±0.00
ENST00000471091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.591±4.51
ENST00000478772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A
ENSG00000241478 ENST00000485881 0.044±0.00 0.007±0.00 0.022±0.00 0.094±0.00 0.101±0.00 0.068±0.00 0.024±0.00 0.127±0.00 0.041±0.00 0.050±0.00 0.023±0.00 0.042±0.04 0.020±0.00 0.020±0.01
ENSG00000242070 ENST00000479221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
ENSG00000243886 ENST00000474107 N/A N/A N/A N/A 0.123±0.00 N/A 0.095±0.00 N/A 0.053±0.00 N/A 0.179±0.00 N/A N/A 0.115±0.00
ENSG00000261146 ENST00000566529 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A 0.008±0.00 0.156±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032473 ENSMUST00000035048 0.009±0.00 N/A N/A 0.005±0.00 0.037±0.02 N/A 0.091±0.02 0.023±0.01 0.005±0.00 104.474±16.96 0.016±0.00 0.371±0.12 0.018±0.01 0.008±0.00
ENSMUST00000112882 N/A N/A N/A N/A 0.040±0.02 N/A 0.145±0.03 0.035±0.00 0.004±0.00 N/A 0.034±0.00 0.764±0.00 N/A 0.043±0.00
ENSMUST00000131922 0.071±0.00 0.171±0.11 N/A N/A 0.073±0.03 0.144±0.08 0.280±0.05 0.093±0.00 0.028±0.00 N/A N/A 0.702±0.21 0.084±0.08 0.039±0.00
ENSMUST00000136429 0.022±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.03 0.023±0.02 244.357±19.30 0.062±0.04 1.246±0.56 N/A 0.019±0.00
ENSMUSG00000053747 ENSMUST00000054819 N/A N/A N/A 7.147±4.97 0.092±0.03 N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 0.160±0.04
ENSMUST00000183065 N/A N/A N/A 0.039±0.00 0.194±0.14 N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.009±0.00 N/A
ENSMUSG00000099631 ENSMUST00000186995 0.106±0.00 N/A 0.011±0.00 0.020±0.01 N/A N/A 0.068±0.02 0.051±0.00 0.045±0.03 N/A 0.063±0.01 0.669±0.86 0.059±0.05 0.062±0.00
ENSMUSG00000101584 ENSMUST00000185764 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.493±4.85

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