C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008RH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs99 VISTA 9606 16:25447894-26049208
GeneTranscriptPositionBiotype
ENSG00000182601 (HS3ST4)
heparan sulfate (glucosamine) 3-O-sulfotransferase 4 		ENST00000331351 (HS3ST4-001) 25692026-26137688 protein_coding
ENST00000475436 (HS3ST4-002) 25886746-26136207 processed_transcript
ENSG00000230330 (HMGN2P3)
high mobility group nucleosomal binding domain 2 pseudogene 3 		ENST00000433603 (HMGN2P3-001) 26032539-26032811 processed_pseudogene
ENSG00000260255 (RP11-185O21.1)
 ENST00000564266 (RP11-185O21.1-001) 25824710-25826330 processed_pseudogene
ENSG00000260690 (CYCSP39)
cytochrome c, somatic pseudogene 39 		ENST00000565821 (CYCSP39-001) 25454339-25454647 processed_pseudogene
CIL_0008RH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs99 VISTA 10090 7:123732956-124334354
GeneTranscriptPositionBiotype
ENSMUSG00000078591 (Hs3st4)
heparan sulfate (glucosamine) 3-O-sulfotransferase 4 		ENSMUST00000106437 (Hs3st4-001) 123982869-124398989 protein_coding
ENSMUSG00000085899 (Gm15338)
predicted gene 15338 		ENSMUST00000151884 (Gm15338-001) 124186718-124290270 sense_intronic
ENSMUSG00000098129 (Gm27040)
predicted gene, 27040 		ENSMUST00000181984 (Gm27040-001) 123971046-123983454 antisense
ENSMUSG00000098160 (Gm26974)
predicted gene, 26974 		ENSMUST00000182054 (Gm26974-002) 123966398-123968381 lincRNA
ENSMUST00000183263 (Gm26974-001) 123958955-123968767 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RH_0001ENSG00000182601ENST00000331351ENST00000475436ENSG00000230330ENST00000433603ENSG00000260255ENST00000564266ENSG00000260690ENST00000565821CIL_0008RH_0002ENSMUSG00000078591ENSMUST00000106437ENSMUSG00000085899ENSMUST00000151884ENSMUSG00000098129ENSMUST00000181984ENSMUSG00000098160ENSMUST00000182054ENSMUST00000183263
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RH_0001ENSG00000182601ENST00000331351ENST00000475436ENSG00000230330ENST00000433603ENSG00000260255ENST00000564266ENSG00000260690ENST00000565821CIL_0008RH_0002ENSMUSG00000078591ENSMUST00000106437ENSMUSG00000085899ENSMUST00000151884ENSMUSG00000098129ENSMUST00000181984ENSMUSG00000098160ENSMUST00000182054ENSMUST00000183263
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182601 ENST00000331351 N/A N/A N/A 7.829±6.85 0.457±0.00 0.025±0.00 N/A N/A N/A 0.012±0.00 N/A 0.023±0.01 0.022±0.00 0.379±0.09
ENST00000475436 N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A 0.565±0.00 N/A N/A N/A
ENSG00000230330 ENST00000433603 0.066±0.00 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260255 ENST00000564266 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260690 ENST00000565821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000078591 ENSMUST00000106437 0.056±0.02 0.030±0.01 0.009±0.00 7.468±4.01 0.033±0.00 0.033±0.02 0.024±0.01 0.011±0.00 0.007±0.01 0.022±0.01 0.019±0.00 0.038±0.02 0.033±0.02 0.696±0.00
ENSMUSG00000085899 ENSMUST00000151884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.328±0.00
ENSMUSG00000098129 ENSMUST00000181984 N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098160 ENSMUST00000182054 N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSMUST00000183263 N/A N/A N/A 0.101±0.00 N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 0.145±0.00

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